Wall clock time and date at job start Tue Mar 31 2020 06:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35909 * 116.99926 * 2 1 4 4 C 1.38530 * 119.99438 * 0.27484 * 3 2 1 5 5 C 1.39287 * 119.81637 * 180.25007 * 4 3 2 6 6 C 1.48314 * 120.10114 * 179.74626 * 5 4 3 7 7 C 1.39898 * 119.60599 * 184.75022 * 6 5 4 8 8 C 1.38694 * 119.45978 * 180.02562 * 7 6 5 9 9 C 1.38291 * 118.69212 * 359.74400 * 8 7 6 10 10 C 1.40684 * 119.18609 * 0.47714 * 9 8 7 11 11 C 1.41376 * 119.76839 * 179.78701 * 10 9 8 12 12 H 1.07998 * 120.00424 * 0.56380 * 11 10 9 13 13 C 1.40020 * 119.99928 * 180.55496 * 11 10 9 14 14 N 1.30750 * 120.00194 * 177.13595 * 13 11 10 15 15 Si 1.86801 * 120.00039 * 356.86038 * 13 11 10 16 16 H 1.48501 * 109.46961 * 180.27637 * 15 13 11 17 17 H 1.48508 * 109.46989 * 300.27458 * 15 13 11 18 18 H 1.48492 * 109.47157 * 60.27473 * 15 13 11 19 19 N 1.32214 * 119.60560 * 4.73039 * 6 5 4 20 20 C 1.39429 * 119.79918 * 359.47243 * 5 4 3 21 21 C 1.38013 * 119.98927 * 0.27937 * 20 5 4 22 22 C 1.38259 * 120.18050 * 359.97436 * 21 20 5 23 23 C 1.50702 * 119.90036 * 180.02562 * 22 21 20 24 24 C 1.53001 * 117.49795 * 8.61346 * 23 22 21 25 25 C 1.52995 * 60.00010 * 252.51387 * 24 23 22 26 26 H 1.08999 * 109.47089 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47538 * 300.00154 * 1 2 3 28 28 H 1.09001 * 109.47207 * 60.00059 * 1 2 3 29 29 H 1.08001 * 120.09181 * 0.02935 * 4 3 2 30 30 H 1.07992 * 120.27026 * 0.02562 * 7 6 5 31 31 H 1.08004 * 120.65480 * 180.02562 * 8 7 6 32 32 H 1.08000 * 120.41195 * 180.26962 * 9 8 7 33 33 H 0.97002 * 119.99528 * 354.14552 * 14 13 11 34 34 H 1.08005 * 120.00774 * 180.24543 * 20 5 4 35 35 H 1.07993 * 119.90864 * 179.97438 * 21 20 5 36 36 H 1.09003 * 115.55379 * 154.32813 * 23 22 21 37 37 H 1.09004 * 117.49964 * 0.02562 * 24 23 22 38 38 H 1.09002 * 117.49625 * 145.02534 * 24 23 22 39 39 H 1.08999 * 117.50062 * 252.50674 * 25 24 23 40 40 H 1.09005 * 117.49742 * 107.48947 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3727 0.0058 5 6 1.9275 3.6118 0.0005 6 6 1.1258 4.8595 0.0009 7 6 1.7716 6.0960 -0.1052 8 6 1.0189 7.2610 -0.1039 9 6 -0.3568 7.1625 -0.0025 10 6 -0.9474 5.8903 0.1061 11 6 -2.3522 5.7755 0.2150 12 1 -2.9689 6.6621 0.2055 13 6 -2.9443 4.5124 0.3350 14 7 -4.2382 4.4090 0.4920 15 14 -1.8865 2.9744 0.2630 16 1 -2.7484 1.7737 0.4070 17 1 -1.1778 2.9216 -1.0410 18 1 -0.8925 3.0053 1.3658 19 7 -0.1907 4.7900 0.1011 20 6 3.3204 3.6756 0.0005 21 6 4.0642 2.5131 0.0000 22 6 3.4321 1.2834 0.0000 23 6 4.2505 0.0180 0.0000 24 6 5.7609 0.1536 0.2033 25 6 5.2039 -0.2066 -1.1754 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.2128 2.3178 0.0107 30 1 2.8473 6.1431 -0.1873 31 1 1.4974 8.2258 -0.1852 32 1 -0.9700 8.0515 -0.0032 33 1 -4.7776 5.2065 0.6105 34 1 3.8171 4.6346 0.0004 35 1 5.1429 2.5640 -0.0003 36 1 3.7616 -0.8581 0.4260 37 1 6.1625 1.1580 0.3375 38 1 6.2659 -0.6335 0.7634 39 1 5.3425 -1.2306 -1.5224 40 1 5.2391 0.5609 -1.9486 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244888121.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:42 Heat of formation + Delta-G solvation = 19.427838 kcal Electronic energy + Delta-G solvation = -23169.596629 eV Core-core repulsion = 19914.135991 eV Total energy + Delta-G solvation = -3255.460638 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.55598 -40.47657 -38.83881 -37.51631 -35.84634 -33.45574 -33.07892 -31.21609 -30.71581 -28.52181 -27.29668 -25.53535 -23.86303 -23.36175 -22.94531 -22.17082 -21.27943 -20.42547 -19.18641 -17.69211 -17.47437 -16.90569 -16.78091 -16.71504 -16.23566 -16.06128 -15.49415 -15.03573 -14.97686 -14.79760 -14.46306 -14.18464 -13.83978 -13.77568 -13.50160 -12.96300 -12.85314 -12.79861 -12.31582 -12.28746 -12.12239 -11.92575 -11.81114 -11.69473 -11.64884 -11.35361 -11.16690 -10.55912 -10.19484 -9.76712 -9.54205 -9.33178 -8.87556 -6.90142 -0.27902 0.40573 0.66391 1.00954 1.31053 1.51541 1.82392 2.23656 2.28922 2.43113 2.74518 3.17802 3.34840 3.54845 3.63521 3.76482 3.99282 4.10634 4.11516 4.13958 4.18333 4.28517 4.35099 4.45364 4.51208 4.53166 4.61135 4.62358 4.66000 4.80524 4.89588 5.01568 5.10503 5.19279 5.29496 5.32074 5.34356 5.36236 5.49815 5.53624 5.61944 5.72899 5.80890 5.96780 6.28217 6.30874 6.55662 7.46321 7.86832 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.017817 B = 0.005683 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.196470 B = 4926.225420 C = 6409.855889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.313 6.313 3 C 0.107 3.893 4 C -0.217 4.217 5 C -0.032 4.032 6 C 0.176 3.824 7 C -0.268 4.268 8 C -0.036 4.036 9 C -0.273 4.273 10 C 0.233 3.767 11 C -0.514 4.514 12 H 0.072 0.928 13 C 0.013 3.987 14 N -0.831 5.831 15 Si 1.180 2.820 16 H -0.321 1.321 17 H -0.297 1.297 18 H -0.291 1.291 19 N -0.590 5.590 20 C -0.123 4.123 21 C -0.081 4.081 22 C -0.078 4.078 23 C -0.129 4.129 24 C -0.159 4.159 25 C -0.164 4.164 26 H 0.145 0.855 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.118 0.882 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.117 0.883 33 H 0.283 0.717 34 H 0.158 0.842 35 H 0.172 0.828 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.084 -7.327 -1.396 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.227 6.227 3 C 0.062 3.938 4 C -0.236 4.236 5 C -0.033 4.033 6 C 0.038 3.962 7 C -0.290 4.290 8 C -0.060 4.060 9 C -0.294 4.294 10 C 0.108 3.892 11 C -0.547 4.547 12 H 0.090 0.910 13 C -0.204 4.204 14 N -0.454 5.454 15 Si 1.017 2.983 16 H -0.254 1.254 17 H -0.227 1.227 18 H -0.221 1.221 19 N -0.310 5.310 20 C -0.142 4.142 21 C -0.098 4.098 22 C -0.079 4.079 23 C -0.147 4.147 24 C -0.195 4.195 25 C -0.201 4.201 26 H 0.163 0.837 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.135 0.865 30 H 0.173 0.827 31 H 0.174 0.826 32 H 0.135 0.865 33 H 0.094 0.906 34 H 0.176 0.824 35 H 0.190 0.810 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 18.509 -9.809 -1.327 20.990 hybrid contribution -1.334 3.168 0.011 3.438 sum 17.175 -6.641 -1.316 18.462 Atomic orbital electron populations 1.23402 0.78070 1.06259 1.00677 1.85990 1.21554 1.26190 1.88924 1.18934 0.92549 0.83756 0.98567 1.21956 1.00979 0.92998 1.07650 1.18708 0.94065 0.90287 1.00210 1.20016 0.88951 0.93420 0.93784 1.21710 1.01223 0.91091 1.14986 1.21471 0.92599 0.99190 0.92737 1.21913 0.96307 0.96837 1.14392 1.18788 0.93370 0.88675 0.88366 1.20769 0.91789 0.95971 1.46158 0.91015 1.28370 0.97042 1.06243 0.88713 1.70645 1.06252 1.35212 1.33326 0.81879 0.68861 0.69334 0.78210 1.25423 1.22674 1.22050 1.66095 1.06950 1.31379 1.26538 1.21396 0.90714 1.00604 1.01469 1.21143 1.01406 0.89416 0.97868 1.18888 0.88874 0.96028 1.04134 1.20780 0.91893 0.95651 1.06345 1.23211 0.92863 1.04328 0.99125 1.23099 1.01764 1.03504 0.91726 0.83731 0.94091 0.93676 0.86460 0.82663 0.82560 0.86530 0.90583 0.82417 0.81040 0.87448 0.87120 0.86951 0.87412 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 9.22 113.37 1.05 1.38 16 2 O -0.31 -10.39 9.66 -92.52 -0.89 -11.29 16 3 C 0.11 3.81 6.65 22.47 0.15 3.96 16 4 C -0.22 -9.13 8.27 22.59 0.19 -8.94 16 5 C -0.03 -1.27 5.87 -20.06 -0.12 -1.39 16 6 C 0.18 7.98 6.73 42.17 0.28 8.26 16 7 C -0.27 -10.05 9.47 22.78 0.22 -9.83 16 8 C -0.04 -1.36 10.15 22.39 0.23 -1.13 16 9 C -0.27 -12.49 9.83 22.88 0.22 -12.27 16 10 C 0.23 12.63 6.43 40.25 0.26 12.89 16 11 C -0.51 -29.85 9.58 23.47 0.22 -29.63 16 12 H 0.07 4.16 8.06 -2.91 -0.02 4.14 16 13 C 0.01 0.74 5.52 85.29 0.47 1.21 16 14 N -0.83 -48.07 13.65 21.84 0.30 -47.77 16 15 Si 1.18 61.97 19.61 68.60 1.35 63.31 16 16 H -0.32 -15.82 7.11 99.48 0.71 -15.11 16 17 H -0.30 -15.70 6.62 99.48 0.66 -15.04 16 18 H -0.29 -15.47 6.32 99.48 0.63 -14.84 16 19 N -0.59 -31.29 4.18 -178.20 -0.75 -32.03 16 20 C -0.12 -3.60 9.41 22.50 0.21 -3.39 16 21 C -0.08 -1.98 9.28 22.22 0.21 -1.77 16 22 C -0.08 -2.22 5.63 -19.72 -0.11 -2.33 16 23 C -0.13 -2.81 5.74 -11.54 -0.07 -2.87 16 24 C -0.16 -2.31 9.86 30.59 0.30 -2.01 16 25 C -0.16 -2.72 10.16 30.59 0.31 -2.41 16 26 H 0.14 3.17 8.14 -2.39 -0.02 3.15 16 27 H 0.04 1.39 6.48 -2.38 -0.02 1.37 16 28 H 0.04 1.50 7.11 -2.39 -0.02 1.48 16 29 H 0.12 5.44 0.63 -2.91 0.00 5.44 16 30 H 0.16 4.37 6.20 -2.91 -0.02 4.35 16 31 H 0.16 4.32 8.06 -2.91 -0.02 4.30 16 32 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 33 H 0.28 15.71 8.73 -92.71 -0.81 14.91 16 34 H 0.16 3.58 6.19 -2.91 -0.02 3.57 16 35 H 0.17 2.70 6.00 -2.91 -0.02 2.68 16 36 H 0.11 2.49 7.75 -2.39 -0.02 2.47 16 37 H 0.11 1.33 6.17 -2.38 -0.01 1.31 16 38 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -69.54 316.94 4.94 -64.60 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.92 Total: 13.45 kcal Atomic # 6 Polarization: -54.29 SS G_CDS: 4.02 Total: -50.27 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -0.45 Total: -79.81 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -0.89 Total: -11.29 kcal Atomic # 14 Polarization: 61.97 SS G_CDS: 1.35 Total: 63.31 kcal Total: -69.54 4.94 -64.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244888121.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.026 kcal (2) G-P(sol) polarization free energy of solvation -69.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds