Wall clock time and date at job start Tue Mar 31 2020 06:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35903 * 117.00027 * 2 1 4 4 C 1.38439 * 119.98102 * 359.97438 * 3 2 1 5 5 C 1.39568 * 119.79307 * 180.02562 * 4 3 2 6 6 C 1.47857 * 120.12440 * 180.02562 * 5 4 3 7 7 C 1.39299 * 120.77935 * 309.97406 * 6 5 4 8 8 N 1.31677 * 120.65968 * 179.97438 * 7 6 5 9 9 C 1.32200 * 122.50339 * 0.02562 * 8 7 6 10 10 C 1.36493 * 121.51134 * 0.02562 * 9 8 7 11 11 C 1.41118 * 119.09928 * 359.67834 * 10 9 8 12 12 C 1.40929 * 121.10922 * 180.31690 * 11 10 9 13 13 H 1.08004 * 120.00615 * 154.77285 * 12 11 10 14 14 C 1.40185 * 119.99737 * 334.77774 * 12 11 10 15 15 N 1.30679 * 119.99794 * 344.19608 * 14 12 11 16 16 Si 1.86803 * 119.99803 * 164.19521 * 14 12 11 17 17 H 1.48507 * 109.47166 * 60.00280 * 16 14 12 18 18 H 1.48502 * 109.46978 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47329 * 300.00049 * 16 14 12 20 20 C 1.39722 * 119.75251 * 359.97438 * 5 4 3 21 21 C 1.37929 * 119.95597 * 0.02562 * 20 5 4 22 22 C 1.38334 * 120.21008 * 0.27619 * 21 20 5 23 23 C 1.50700 * 119.87444 * 179.72236 * 22 21 20 24 24 C 1.53003 * 117.50003 * 8.62065 * 23 22 21 25 25 C 1.53001 * 60.00107 * 252.51508 * 24 23 22 26 26 H 1.08995 * 109.46663 * 60.00518 * 1 2 3 27 27 H 1.08995 * 109.46994 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47337 * 300.00823 * 1 2 3 29 29 H 1.07999 * 120.10421 * 0.04908 * 4 3 2 30 30 H 1.07999 * 119.67046 * 359.97365 * 7 6 5 31 31 H 1.07998 * 119.24809 * 179.97438 * 9 8 7 32 32 H 1.07993 * 120.44989 * 179.97438 * 10 9 8 33 33 H 0.97004 * 119.99527 * 179.97438 * 15 14 12 34 34 H 1.08000 * 120.01921 * 179.97438 * 20 5 4 35 35 H 1.08001 * 119.89186 * 179.97438 * 21 20 5 36 36 H 1.08994 * 115.55146 * 154.33304 * 23 22 21 37 37 H 1.08998 * 117.49444 * 0.02562 * 24 23 22 38 38 H 1.08993 * 117.49819 * 145.01494 * 24 23 22 39 39 H 1.09006 * 117.49095 * 252.51464 * 25 24 23 40 40 H 1.08993 * 117.50404 * 107.49286 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2917 2.3717 -0.0005 5 6 1.9294 3.6132 -0.0011 6 6 1.1309 4.8576 -0.0011 7 6 0.0985 5.0421 -0.9179 8 7 -0.6115 6.1511 -0.9154 9 6 -0.3899 7.1345 -0.0602 10 6 0.5981 7.0549 0.8781 11 6 1.3954 5.8921 0.9383 12 6 2.4227 5.7622 1.8943 13 1 2.7440 4.7812 2.2119 14 6 3.0274 6.9064 2.4330 15 7 2.8735 8.0642 1.8469 16 14 4.0531 6.7760 3.9888 17 1 5.1875 5.8459 3.7573 18 1 4.5790 8.1173 4.3489 19 1 3.2089 6.2610 5.0966 20 6 3.3252 3.6757 -0.0005 21 6 4.0667 2.5127 0.0000 22 6 3.4329 1.2831 -0.0058 23 6 4.2505 0.0172 -0.0115 24 6 5.7610 0.1507 0.1928 25 6 5.2040 -0.2026 -1.1877 26 1 -0.3632 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8898 29 1 0.2131 2.3168 -0.0002 30 1 -0.1219 4.2678 -1.6379 31 1 -1.0043 8.0216 -0.1055 32 1 0.7644 7.8688 1.5681 33 1 3.2917 8.8560 2.2200 34 1 3.8231 4.6340 -0.0014 35 1 5.1456 2.5622 0.0000 36 1 3.7610 -0.8606 0.4103 37 1 6.1632 1.1542 0.3318 38 1 6.2653 -0.6391 0.7494 39 1 5.3420 -1.2252 -1.5393 40 1 5.2399 0.5683 -1.9574 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244894209.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:13 Heat of formation + Delta-G solvation = 29.767915 kcal Electronic energy + Delta-G solvation = -22983.659663 eV Core-core repulsion = 19728.647404 eV Total energy + Delta-G solvation = -3255.012259 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.93578 -38.43226 -37.53331 -36.02607 -34.26682 -31.78292 -30.37069 -29.55771 -28.56241 -26.82932 -26.09018 -23.68878 -22.38139 -21.84269 -21.32979 -20.76457 -19.73450 -17.76682 -17.27783 -16.21301 -15.63777 -15.42332 -15.31256 -14.73773 -14.53635 -14.38002 -14.14900 -13.79441 -13.18977 -12.79583 -12.64813 -12.45694 -12.19266 -12.01080 -11.75133 -11.52323 -11.38493 -11.34796 -11.14740 -10.84978 -10.69602 -10.64043 -10.43515 -10.26643 -10.10443 -9.82802 -9.53138 -8.45735 -8.08674 -7.94777 -7.77115 -7.24966 -6.94627 -4.69567 1.71129 2.06086 2.68431 2.78404 2.94934 2.98142 3.17629 3.61628 3.75736 3.99417 4.47800 4.52841 4.80985 5.06903 5.21026 5.23400 5.35985 5.40086 5.51786 5.53724 5.62661 5.67077 5.72878 5.79680 5.92145 5.98054 6.06753 6.15035 6.23169 6.25277 6.41347 6.64248 6.73305 6.80056 6.88220 6.99900 7.09727 7.26427 7.30051 7.35324 7.48977 7.73672 7.87353 7.99209 8.33462 8.58551 8.62702 9.53137 9.90544 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012742 B = 0.005731 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.943252 B = 4884.557269 C = 6391.481253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.126 3.874 4 C -0.212 4.212 5 C 0.060 3.940 6 C -0.239 4.239 7 C 0.131 3.869 8 N -0.579 5.579 9 C 0.082 3.918 10 C -0.208 4.208 11 C 0.147 3.853 12 C -0.439 4.439 13 H 0.088 0.912 14 C 0.078 3.922 15 N -0.777 5.777 16 Si 0.909 3.091 17 H -0.261 1.261 18 H -0.276 1.276 19 H -0.261 1.261 20 C -0.129 4.129 21 C -0.090 4.090 22 C -0.112 4.112 23 C -0.091 4.091 24 C -0.184 4.184 25 C -0.175 4.175 26 H 0.053 0.947 27 H 0.092 0.908 28 H 0.053 0.947 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.286 0.714 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.679 -10.652 -0.657 11.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.082 3.918 4 C -0.231 4.231 5 C 0.059 3.941 6 C -0.244 4.244 7 C -0.028 4.028 8 N -0.293 5.293 9 C -0.066 4.066 10 C -0.230 4.230 11 C 0.139 3.861 12 C -0.468 4.468 13 H 0.106 0.894 14 C -0.143 4.143 15 N -0.401 5.401 16 Si 0.733 3.267 17 H -0.185 1.185 18 H -0.201 1.201 19 H -0.185 1.185 20 C -0.147 4.147 21 C -0.107 4.107 22 C -0.112 4.112 23 C -0.109 4.109 24 C -0.220 4.220 25 C -0.212 4.212 26 H 0.072 0.928 27 H 0.111 0.889 28 H 0.072 0.928 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.144 0.856 33 H 0.098 0.902 34 H 0.147 0.853 35 H 0.138 0.862 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.128 -10.420 -1.251 10.709 hybrid contribution 0.894 0.218 1.372 1.652 sum 3.022 -10.202 0.122 10.641 Atomic orbital electron populations 1.22960 0.79161 1.03008 1.01503 1.85988 1.20689 1.27447 1.89345 1.18535 0.91260 0.83712 0.98284 1.21323 0.99450 0.91588 1.10752 1.18476 0.92487 0.91351 0.91780 1.19533 1.03993 0.97537 1.03378 1.22067 0.90931 0.94190 0.95588 1.67317 1.31249 1.02633 1.28110 1.21728 0.96238 0.95916 0.92700 1.21913 0.97604 1.01068 1.02418 1.17714 0.90145 0.89349 0.88922 1.19617 1.14862 0.94032 1.18337 0.89428 1.26039 0.96111 0.94545 0.97618 1.69732 1.34354 1.00414 1.35616 0.86317 0.80298 0.78637 0.81441 1.18486 1.20068 1.18535 1.21308 0.93442 0.98149 1.01823 1.20714 0.99259 0.91081 0.99693 1.18268 0.89649 0.93605 1.09716 1.20707 0.90304 0.97219 1.02719 1.23052 0.96246 1.02906 0.99841 1.22987 1.04284 1.02171 0.91799 0.92835 0.88943 0.92825 0.86014 0.86239 0.86404 0.85625 0.90238 0.85251 0.86187 0.87324 0.88429 0.89003 0.89112 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.32 -5.02 9.65 -19.44 -0.19 -5.20 16 3 C 0.13 2.22 6.65 -39.27 -0.26 1.96 16 4 C -0.21 -3.99 8.53 -39.01 -0.33 -4.32 16 5 C 0.06 1.27 4.99 -104.91 -0.52 0.74 16 6 C -0.24 -5.61 5.54 -104.04 -0.58 -6.19 16 7 C 0.13 2.99 10.71 -17.22 -0.18 2.81 16 8 N -0.58 -13.87 10.32 -13.37 -0.14 -14.01 16 9 C 0.08 1.93 11.09 -18.02 -0.20 1.73 16 10 C -0.21 -5.17 8.72 -39.12 -0.34 -5.51 16 11 C 0.15 3.69 5.59 -106.26 -0.59 3.10 16 12 C -0.44 -10.76 7.31 -37.83 -0.28 -11.04 16 13 H 0.09 2.13 6.72 -52.48 -0.35 1.78 16 14 C 0.08 1.81 5.21 -17.31 -0.09 1.72 16 15 N -0.78 -18.57 10.95 55.56 0.61 -17.96 16 16 Si 0.91 17.58 29.59 -169.99 -5.03 12.55 16 17 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 18 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 19 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 20 C -0.13 -2.59 8.08 -39.14 -0.32 -2.90 16 21 C -0.09 -1.56 9.28 -39.66 -0.37 -1.93 16 22 C -0.11 -1.89 5.63 -104.35 -0.59 -2.48 16 23 C -0.09 -1.30 5.74 -91.77 -0.53 -1.82 16 24 C -0.18 -2.21 9.86 -26.73 -0.26 -2.47 16 25 C -0.18 -2.12 10.16 -26.73 -0.27 -2.40 16 26 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.64 7.66 -51.93 -0.40 0.25 16 29 H 0.12 2.14 6.28 -52.49 -0.33 1.81 16 30 H 0.12 2.44 8.05 -52.49 -0.42 2.01 16 31 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 32 H 0.13 3.15 6.26 -52.49 -0.33 2.82 16 33 H 0.29 6.23 8.29 -40.82 -0.34 5.89 16 34 H 0.13 2.75 7.38 -52.49 -0.39 2.36 16 35 H 0.12 1.81 6.00 -52.49 -0.31 1.50 16 36 H 0.11 1.52 7.75 -51.93 -0.40 1.12 16 37 H 0.10 1.18 6.16 -51.93 -0.32 0.86 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 333.56 15.07 5.03 5.03 Total: -1.00 -27.09 333.56 -9.34 -36.43 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -4.90 Total: 10.83 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -4.72 Total: -27.66 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.47 Total: -31.97 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.19 Total: -5.20 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.09 -9.34 -36.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244894209.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.197 kcal (2) G-P(sol) polarization free energy of solvation -27.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds