Wall clock time and date at job start Tue Mar 31 2020 06:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35903 * 117.00027 * 2 1 4 4 C 1.38439 * 119.98102 * 359.97438 * 3 2 1 5 5 C 1.39568 * 119.79307 * 180.02562 * 4 3 2 6 6 C 1.47857 * 120.12440 * 180.02562 * 5 4 3 7 7 C 1.39299 * 120.77935 * 309.97406 * 6 5 4 8 8 N 1.31677 * 120.65968 * 179.97438 * 7 6 5 9 9 C 1.32200 * 122.50339 * 0.02562 * 8 7 6 10 10 C 1.36493 * 121.51134 * 0.02562 * 9 8 7 11 11 C 1.41118 * 119.09928 * 359.67834 * 10 9 8 12 12 C 1.40929 * 121.10922 * 180.31690 * 11 10 9 13 13 H 1.08004 * 120.00615 * 154.77285 * 12 11 10 14 14 C 1.40185 * 119.99737 * 334.77774 * 12 11 10 15 15 N 1.30679 * 119.99794 * 344.19608 * 14 12 11 16 16 Si 1.86803 * 119.99803 * 164.19521 * 14 12 11 17 17 H 1.48507 * 109.47166 * 60.00280 * 16 14 12 18 18 H 1.48502 * 109.46978 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47329 * 300.00049 * 16 14 12 20 20 C 1.39722 * 119.75251 * 359.97438 * 5 4 3 21 21 C 1.37929 * 119.95597 * 0.02562 * 20 5 4 22 22 C 1.38334 * 120.21008 * 0.27619 * 21 20 5 23 23 C 1.50700 * 119.87444 * 179.72236 * 22 21 20 24 24 C 1.53003 * 117.50003 * 8.62065 * 23 22 21 25 25 C 1.53001 * 60.00107 * 252.51508 * 24 23 22 26 26 H 1.08995 * 109.46663 * 60.00518 * 1 2 3 27 27 H 1.08995 * 109.46994 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47337 * 300.00823 * 1 2 3 29 29 H 1.07999 * 120.10421 * 0.04908 * 4 3 2 30 30 H 1.07999 * 119.67046 * 359.97365 * 7 6 5 31 31 H 1.07998 * 119.24809 * 179.97438 * 9 8 7 32 32 H 1.07993 * 120.44989 * 179.97438 * 10 9 8 33 33 H 0.97004 * 119.99527 * 179.97438 * 15 14 12 34 34 H 1.08000 * 120.01921 * 179.97438 * 20 5 4 35 35 H 1.08001 * 119.89186 * 179.97438 * 21 20 5 36 36 H 1.08994 * 115.55146 * 154.33304 * 23 22 21 37 37 H 1.08998 * 117.49444 * 0.02562 * 24 23 22 38 38 H 1.08993 * 117.49819 * 145.01494 * 24 23 22 39 39 H 1.09006 * 117.49095 * 252.51464 * 25 24 23 40 40 H 1.08993 * 117.50404 * 107.49286 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2917 2.3717 -0.0005 5 6 1.9294 3.6132 -0.0011 6 6 1.1309 4.8576 -0.0011 7 6 0.0985 5.0421 -0.9179 8 7 -0.6115 6.1511 -0.9154 9 6 -0.3899 7.1345 -0.0602 10 6 0.5981 7.0549 0.8781 11 6 1.3954 5.8921 0.9383 12 6 2.4227 5.7622 1.8943 13 1 2.7440 4.7812 2.2119 14 6 3.0274 6.9064 2.4330 15 7 2.8735 8.0642 1.8469 16 14 4.0531 6.7760 3.9888 17 1 5.1875 5.8459 3.7573 18 1 4.5790 8.1173 4.3489 19 1 3.2089 6.2610 5.0966 20 6 3.3252 3.6757 -0.0005 21 6 4.0667 2.5127 0.0000 22 6 3.4329 1.2831 -0.0058 23 6 4.2505 0.0172 -0.0115 24 6 5.7610 0.1507 0.1928 25 6 5.2040 -0.2026 -1.1877 26 1 -0.3632 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8898 29 1 0.2131 2.3168 -0.0002 30 1 -0.1219 4.2678 -1.6379 31 1 -1.0043 8.0216 -0.1055 32 1 0.7644 7.8688 1.5681 33 1 3.2917 8.8560 2.2200 34 1 3.8231 4.6340 -0.0014 35 1 5.1456 2.5622 0.0000 36 1 3.7610 -0.8606 0.4103 37 1 6.1632 1.1542 0.3318 38 1 6.2653 -0.6391 0.7494 39 1 5.3420 -1.2252 -1.5393 40 1 5.2399 0.5683 -1.9574 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244894209.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:12 Heat of formation + Delta-G solvation = 17.701910 kcal Electronic energy + Delta-G solvation = -22984.182884 eV Core-core repulsion = 19728.647404 eV Total energy + Delta-G solvation = -3255.535480 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.29923 -40.15515 -38.69612 -37.34213 -36.06281 -33.37563 -32.14431 -30.96946 -30.11045 -28.04612 -27.83267 -25.12414 -23.65568 -23.32259 -22.76852 -22.27116 -21.06243 -19.54451 -18.66931 -17.55440 -17.30395 -16.68601 -16.56408 -16.32159 -16.10800 -15.96573 -15.48008 -15.05170 -14.60204 -14.46305 -14.28205 -14.05742 -13.62023 -13.44125 -13.22641 -13.02822 -12.82585 -12.76521 -12.38902 -12.10592 -12.08766 -11.98544 -11.87388 -11.55589 -11.50914 -11.26123 -11.14553 -10.08483 -9.93912 -9.71850 -9.34085 -8.84654 -8.62596 -6.55234 0.18443 0.60630 0.95419 1.03178 1.36158 1.46743 1.54186 2.14146 2.44592 2.71303 2.77174 3.23794 3.66185 3.69156 3.90903 4.00233 4.10507 4.15164 4.25176 4.34259 4.39809 4.40924 4.47970 4.55130 4.62845 4.72199 4.77146 4.86621 4.93550 4.98715 5.03890 5.17492 5.19504 5.25330 5.32864 5.34899 5.47127 5.55937 5.68644 5.79420 5.93406 5.99451 6.16362 6.46565 6.54727 6.74496 6.78311 7.67493 8.17049 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012742 B = 0.005731 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.943252 B = 4884.557269 C = 6391.481253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.323 6.323 3 C 0.125 3.875 4 C -0.213 4.213 5 C 0.032 3.968 6 C -0.242 4.242 7 C 0.121 3.879 8 N -0.590 5.590 9 C 0.077 3.923 10 C -0.229 4.229 11 C 0.118 3.882 12 C -0.456 4.456 13 H 0.082 0.918 14 C 0.043 3.957 15 N -0.804 5.804 16 Si 0.975 3.025 17 H -0.256 1.256 18 H -0.263 1.263 19 H -0.261 1.261 20 C -0.143 4.143 21 C -0.086 4.086 22 C -0.107 4.107 23 C -0.115 4.115 24 C -0.172 4.172 25 C -0.164 4.164 26 H 0.057 0.943 27 H 0.126 0.874 28 H 0.051 0.949 29 H 0.129 0.871 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.117 0.883 33 H 0.295 0.705 34 H 0.107 0.893 35 H 0.143 0.857 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.865 -12.871 -0.328 13.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.237 6.237 3 C 0.080 3.920 4 C -0.232 4.232 5 C 0.031 3.969 6 C -0.247 4.247 7 C -0.037 4.037 8 N -0.305 5.305 9 C -0.071 4.071 10 C -0.252 4.252 11 C 0.110 3.890 12 C -0.486 4.486 13 H 0.100 0.900 14 C -0.176 4.176 15 N -0.428 5.428 16 Si 0.796 3.204 17 H -0.180 1.180 18 H -0.187 1.187 19 H -0.186 1.186 20 C -0.162 4.162 21 C -0.104 4.104 22 C -0.108 4.108 23 C -0.133 4.133 24 C -0.209 4.209 25 C -0.201 4.201 26 H 0.075 0.925 27 H 0.145 0.855 28 H 0.070 0.930 29 H 0.147 0.853 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.135 0.865 33 H 0.106 0.894 34 H 0.125 0.875 35 H 0.161 0.839 36 H 0.130 0.870 37 H 0.114 0.886 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.302 -12.654 -0.943 13.112 hybrid contribution 0.508 0.774 1.204 1.519 sum 3.809 -11.880 0.261 12.478 Atomic orbital electron populations 1.23264 0.77236 1.05343 1.01590 1.85995 1.22622 1.26155 1.88933 1.18649 0.91746 0.84011 0.97587 1.21354 0.99964 0.91284 1.10574 1.18447 0.92812 0.91234 0.94422 1.19827 1.04050 0.98208 1.02641 1.22437 0.90818 0.94480 0.95916 1.67378 1.31750 1.03045 1.28298 1.22063 0.96132 0.96668 0.92191 1.21914 0.98703 1.01226 1.03321 1.18100 0.90847 0.90215 0.89815 1.19706 1.15385 0.94376 1.19099 0.90031 1.26797 0.96878 0.93807 1.00093 1.69767 1.35062 1.01157 1.36843 0.85331 0.78652 0.79134 0.77320 1.18015 1.18731 1.18579 1.21176 0.93340 0.98260 1.03385 1.20895 1.00281 0.90376 0.98813 1.18651 0.89976 0.94663 1.07465 1.20728 0.91303 0.95880 1.05349 1.23160 0.94239 1.03643 0.99847 1.23063 1.02284 1.03301 0.91416 0.92458 0.85547 0.93029 0.85302 0.84011 0.84055 0.86537 0.89396 0.87470 0.83925 0.87007 0.88571 0.86869 0.86978 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.56 16 2 O -0.32 -9.47 9.65 -92.46 -0.89 -10.37 16 3 C 0.13 4.26 6.65 22.47 0.15 4.41 16 4 C -0.21 -7.99 8.53 22.64 0.19 -7.79 16 5 C 0.03 1.37 4.99 -20.05 -0.10 1.27 16 6 C -0.24 -11.74 5.54 -19.49 -0.11 -11.84 16 7 C 0.12 5.62 10.71 84.97 0.91 6.53 16 8 N -0.59 -28.63 10.32 -196.20 -2.02 -30.65 16 9 C 0.08 3.73 11.09 84.23 0.93 4.67 16 10 C -0.23 -11.84 8.72 22.57 0.20 -11.64 16 11 C 0.12 6.18 5.59 -20.93 -0.12 6.07 16 12 C -0.46 -23.14 7.31 23.40 0.17 -22.97 16 13 H 0.08 4.12 6.72 -2.91 -0.02 4.10 16 14 C 0.04 2.03 5.21 85.34 0.44 2.48 16 15 N -0.80 -39.29 10.95 21.87 0.24 -39.05 16 16 Si 0.98 36.04 29.59 68.60 2.03 38.07 16 17 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 18 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 19 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 20 C -0.14 -5.88 8.08 22.56 0.18 -5.70 16 21 C -0.09 -2.93 9.28 22.22 0.21 -2.73 16 22 C -0.11 -3.46 5.63 -19.69 -0.11 -3.58 16 23 C -0.11 -2.94 5.74 -11.54 -0.07 -3.01 16 24 C -0.17 -3.56 9.86 30.60 0.30 -3.26 16 25 C -0.16 -3.43 10.16 30.60 0.31 -3.12 16 26 H 0.06 1.23 7.66 -2.39 -0.02 1.21 16 27 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.05 1.16 7.66 -2.39 -0.02 1.14 16 29 H 0.13 4.51 6.28 -2.91 -0.02 4.49 16 30 H 0.14 5.79 8.05 -2.91 -0.02 5.77 16 31 H 0.14 5.93 8.06 -2.91 -0.02 5.91 16 32 H 0.12 6.11 6.26 -2.91 -0.02 6.09 16 33 H 0.29 12.97 8.29 -92.71 -0.77 12.20 16 34 H 0.11 4.80 7.38 -2.91 -0.02 4.78 16 35 H 0.14 4.10 6.00 -2.91 -0.02 4.08 16 36 H 0.11 2.82 7.75 -2.39 -0.02 2.80 16 37 H 0.10 2.03 6.16 -2.39 -0.01 2.01 16 38 H 0.11 1.88 8.14 -2.39 -0.02 1.87 16 39 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -59.37 333.56 5.02 -54.34 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: 1.06 Total: 36.34 kcal Atomic # 6 Polarization: -53.29 SS G_CDS: 4.61 Total: -48.68 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: -1.78 Total: -69.70 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.89 Total: -10.37 kcal Atomic # 14 Polarization: 36.04 SS G_CDS: 2.03 Total: 38.07 kcal Total: -59.37 5.02 -54.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244894209.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.044 kcal (2) G-P(sol) polarization free energy of solvation -59.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds