Wall clock time and date at job start Tue Mar 31 2020 06:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35902 * 116.99773 * 2 1 4 4 C 1.38440 * 119.98129 * 0.24119 * 3 2 1 5 5 C 1.39583 * 119.78907 * 180.25038 * 4 3 2 6 6 C 1.47823 * 120.12475 * 179.76164 * 5 4 3 7 7 C 1.39674 * 120.65018 * 309.70363 * 6 5 4 8 8 C 1.38398 * 118.47685 * 180.02562 * 7 6 5 9 9 C 1.39054 * 119.72341 * 0.02562 * 8 7 6 10 10 N 1.31284 * 121.33873 * 359.97438 * 9 8 7 11 11 C 1.33693 * 121.63692 * 359.97438 * 10 9 8 12 12 C 1.40820 * 119.94040 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00273 * 179.97438 * 12 11 10 14 14 C 1.40151 * 119.99821 * 0.02562 * 12 11 10 15 15 N 1.30698 * 120.00215 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99883 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47431 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46827 * 120.00390 * 16 14 12 19 19 H 1.48497 * 109.47264 * 240.00024 * 16 14 12 20 20 C 1.39736 * 119.75172 * 359.49407 * 5 4 3 21 21 C 1.37918 * 119.95680 * 0.27051 * 20 5 4 22 22 C 1.38343 * 120.21030 * 359.97438 * 21 20 5 23 23 C 1.50697 * 119.87533 * 180.02562 * 22 21 20 24 24 C 1.53007 * 117.49840 * 8.61773 * 23 22 21 25 25 C 1.53007 * 60.00035 * 252.51363 * 24 23 22 26 26 H 1.09007 * 109.47001 * 299.99642 * 1 2 3 27 27 H 1.08997 * 109.47439 * 59.99475 * 1 2 3 28 28 H 1.09003 * 109.47167 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.10460 * 0.02562 * 4 3 2 30 30 H 1.08000 * 120.76590 * 0.04529 * 7 6 5 31 31 H 1.07996 * 120.14018 * 180.02562 * 8 7 6 32 32 H 1.08007 * 119.33144 * 180.25867 * 9 8 7 33 33 H 0.96988 * 120.00276 * 179.97438 * 15 14 12 34 34 H 1.08004 * 120.02216 * 180.25462 * 20 5 4 35 35 H 1.07999 * 119.89797 * 180.02562 * 21 20 5 36 36 H 1.08993 * 115.55209 * 154.32784 * 23 22 21 37 37 H 1.08999 * 117.49809 * 0.02562 * 24 23 22 38 38 H 1.08995 * 117.49956 * 145.02446 * 24 23 22 39 39 H 1.09003 * 117.49324 * 252.51238 * 25 24 23 40 40 H 1.09000 * 117.49639 * 107.48766 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2915 2.3717 0.0050 5 6 1.9293 3.6133 -0.0003 6 6 1.1310 4.8574 -0.0003 7 6 0.0969 5.0400 -0.9213 8 6 -0.6212 6.2224 -0.8814 9 6 -0.3015 7.1917 0.0629 10 7 0.6724 7.0106 0.9245 11 6 1.4000 5.8891 0.9349 12 6 2.4369 5.7326 1.8748 13 1 3.0250 4.8269 1.8843 14 6 2.7050 6.7520 2.7985 15 7 1.9923 7.8475 2.7880 16 14 4.0800 6.5442 4.0458 17 1 4.7305 5.2238 3.8500 18 1 5.0839 7.6225 3.8599 19 1 3.5190 6.6215 5.4185 20 6 3.3252 3.6758 0.0001 21 6 4.0667 2.5129 0.0000 22 6 3.4328 1.2832 0.0001 23 6 4.2504 0.0173 0.0006 24 6 5.7608 0.1518 0.2043 25 6 5.2039 -0.2083 -1.1745 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2129 2.3167 0.0094 30 1 -0.1371 4.2759 -1.6478 31 1 -1.4265 6.3916 -1.5808 32 1 -0.8688 8.1103 0.0911 33 1 2.1776 8.5527 3.4275 34 1 3.8233 4.6341 0.0001 35 1 5.1455 2.5623 0.0007 36 1 3.7608 -0.8584 0.4267 37 1 6.1631 1.1560 0.3384 38 1 6.2652 -0.6353 0.7647 39 1 5.3419 -1.2325 -1.5212 40 1 5.2399 0.5590 -1.9479 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244894774.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:01 Heat of formation + Delta-G solvation = 42.315767 kcal Electronic energy + Delta-G solvation = -23000.384807 eV Core-core repulsion = 19745.916664 eV Total energy + Delta-G solvation = -3254.468143 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.93899 -38.29715 -37.52671 -35.99816 -33.76156 -31.79951 -30.42989 -29.57324 -28.72695 -26.82501 -25.83033 -23.71021 -22.37530 -21.76925 -21.30884 -20.75900 -19.73743 -17.59865 -17.37406 -16.24243 -15.60322 -15.41245 -15.28956 -14.78922 -14.44662 -14.24272 -14.08627 -13.81988 -13.19128 -12.86238 -12.43687 -12.33192 -12.12238 -11.83389 -11.74515 -11.38071 -11.29805 -11.23872 -11.10553 -10.88870 -10.65977 -10.64415 -10.44683 -10.29422 -10.07612 -9.73332 -9.48886 -8.51754 -8.11102 -7.75201 -7.67360 -7.17959 -6.52655 -4.60749 1.73113 2.04888 2.68149 2.94896 3.04248 3.09633 3.15330 3.61274 3.86989 3.99676 4.47872 4.65248 4.80958 5.06827 5.20586 5.23407 5.34943 5.40582 5.52179 5.61826 5.67038 5.72491 5.79351 5.92376 5.96689 6.01956 6.05847 6.10173 6.19054 6.23179 6.40023 6.46761 6.63408 6.76621 6.86282 7.01570 7.07932 7.20801 7.28288 7.34005 7.53566 7.68847 7.86358 7.95164 8.17100 8.53102 8.82415 9.98762 10.17705 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012899 B = 0.005736 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.208842 B = 4880.379288 C = 6361.294650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.128 3.872 4 C -0.213 4.213 5 C 0.063 3.937 6 C -0.241 4.241 7 C -0.031 4.031 8 C -0.322 4.322 9 C 0.134 3.866 10 N -0.482 5.482 11 C 0.268 3.732 12 C -0.418 4.418 13 H 0.097 0.903 14 C 0.067 3.933 15 N -0.707 5.707 16 Si 0.903 3.097 17 H -0.256 1.256 18 H -0.271 1.271 19 H -0.271 1.271 20 C -0.139 4.139 21 C -0.087 4.087 22 C -0.114 4.114 23 C -0.091 4.091 24 C -0.183 4.183 25 C -0.176 4.176 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.092 0.908 29 H 0.121 0.879 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.274 0.726 34 H 0.130 0.870 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.380 -10.925 -3.535 11.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.084 3.916 4 C -0.232 4.232 5 C 0.062 3.938 6 C -0.246 4.246 7 C -0.055 4.055 8 C -0.345 4.345 9 C -0.035 4.035 10 N -0.193 5.193 11 C 0.145 3.855 12 C -0.447 4.447 13 H 0.115 0.885 14 C -0.159 4.159 15 N -0.327 5.327 16 Si 0.726 3.274 17 H -0.179 1.179 18 H -0.196 1.196 19 H -0.197 1.197 20 C -0.157 4.157 21 C -0.105 4.105 22 C -0.115 4.115 23 C -0.109 4.109 24 C -0.220 4.220 25 C -0.213 4.213 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.139 0.861 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.137 0.863 33 H 0.086 0.914 34 H 0.147 0.853 35 H 0.139 0.861 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.676 -10.272 -2.770 10.971 hybrid contribution -0.114 -0.458 -0.086 0.480 sum 2.562 -10.730 -2.856 11.395 Atomic orbital electron populations 1.22957 0.79195 1.02991 1.01472 1.85985 1.20669 1.27466 1.89322 1.18549 0.91280 0.83696 0.98115 1.21305 0.99413 0.91575 1.10876 1.18507 0.92441 0.91509 0.91321 1.19352 1.03244 0.96880 1.05129 1.20872 0.93157 0.95784 0.95735 1.21216 1.07333 0.98553 1.07443 1.22620 0.93835 0.96463 0.90603 1.68777 1.06402 1.21903 1.22251 1.18520 0.91094 0.85863 0.90006 1.19927 1.12178 1.02203 1.10423 0.88530 1.26174 0.97012 0.94684 0.98057 1.70122 1.31113 1.03554 1.27884 0.86318 0.80895 0.80003 0.80151 1.17925 1.19605 1.19657 1.21308 0.93478 0.98161 1.02793 1.20701 0.99242 0.91072 0.99512 1.18253 0.89629 0.93606 1.09985 1.20701 0.90310 0.97213 1.02675 1.23054 0.96251 1.02902 0.99812 1.22989 1.04346 1.02117 0.91829 0.92776 0.92951 0.88928 0.86106 0.88669 0.88682 0.86340 0.91423 0.85258 0.86130 0.87332 0.88421 0.88991 0.89124 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.32 -5.08 9.66 -19.43 -0.19 -5.27 16 3 C 0.13 2.28 6.65 -39.27 -0.26 2.02 16 4 C -0.21 -4.08 8.54 -39.01 -0.33 -4.42 16 5 C 0.06 1.35 5.02 -104.92 -0.53 0.82 16 6 C -0.24 -5.75 5.53 -104.07 -0.58 -6.33 16 7 C -0.03 -0.69 9.67 -38.99 -0.38 -1.07 16 8 C -0.32 -7.06 10.10 -39.22 -0.40 -7.46 16 9 C 0.13 3.17 11.17 -17.48 -0.20 2.97 16 10 N -0.48 -12.99 7.85 -10.91 -0.09 -13.07 16 11 C 0.27 7.11 6.56 -84.71 -0.56 6.55 16 12 C -0.42 -10.77 7.96 -37.89 -0.30 -11.07 16 13 H 0.10 2.38 5.24 -52.49 -0.27 2.11 16 14 C 0.07 1.67 5.50 -17.32 -0.10 1.57 16 15 N -0.71 -18.27 11.46 55.56 0.64 -17.63 16 16 Si 0.90 18.24 29.56 -169.99 -5.03 13.22 16 17 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 18 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 C -0.14 -2.79 7.56 -39.14 -0.30 -3.09 16 21 C -0.09 -1.52 9.28 -39.66 -0.37 -1.89 16 22 C -0.11 -1.95 5.63 -104.35 -0.59 -2.54 16 23 C -0.09 -1.30 5.74 -91.77 -0.53 -1.82 16 24 C -0.18 -2.21 9.86 -26.72 -0.26 -2.47 16 25 C -0.18 -2.13 10.16 -26.72 -0.27 -2.40 16 26 H 0.05 0.67 7.65 -51.93 -0.40 0.27 16 27 H 0.05 0.61 7.67 -51.93 -0.40 0.22 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.12 2.18 6.29 -52.49 -0.33 1.85 16 30 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.12 2.48 8.06 -52.48 -0.42 2.06 16 33 H 0.27 6.40 8.29 -40.82 -0.34 6.06 16 34 H 0.13 2.67 7.23 -52.48 -0.38 2.29 16 35 H 0.12 1.80 6.00 -52.49 -0.31 1.49 16 36 H 0.11 1.53 7.75 -51.93 -0.40 1.13 16 37 H 0.10 1.17 6.16 -51.93 -0.32 0.85 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 333.61 15.07 5.03 5.03 Total: -1.00 -28.81 333.61 -9.48 -38.30 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -4.91 Total: 8.69 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -4.94 Total: -29.26 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 0.55 Total: -30.70 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.19 Total: -5.27 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.81 -9.48 -38.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244894774.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.616 kcal (2) G-P(sol) polarization free energy of solvation -28.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds