Wall clock time and date at job start Tue Mar 31 2020 06:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35902 * 116.99773 * 2 1 4 4 C 1.38440 * 119.98129 * 0.24119 * 3 2 1 5 5 C 1.39583 * 119.78907 * 180.25038 * 4 3 2 6 6 C 1.47823 * 120.12475 * 179.76164 * 5 4 3 7 7 C 1.39674 * 120.65018 * 309.70363 * 6 5 4 8 8 C 1.38398 * 118.47685 * 180.02562 * 7 6 5 9 9 C 1.39054 * 119.72341 * 0.02562 * 8 7 6 10 10 N 1.31284 * 121.33873 * 359.97438 * 9 8 7 11 11 C 1.33693 * 121.63692 * 359.97438 * 10 9 8 12 12 C 1.40820 * 119.94040 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00273 * 179.97438 * 12 11 10 14 14 C 1.40151 * 119.99821 * 0.02562 * 12 11 10 15 15 N 1.30698 * 120.00215 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99883 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47431 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46827 * 120.00390 * 16 14 12 19 19 H 1.48497 * 109.47264 * 240.00024 * 16 14 12 20 20 C 1.39736 * 119.75172 * 359.49407 * 5 4 3 21 21 C 1.37918 * 119.95680 * 0.27051 * 20 5 4 22 22 C 1.38343 * 120.21030 * 359.97438 * 21 20 5 23 23 C 1.50697 * 119.87533 * 180.02562 * 22 21 20 24 24 C 1.53007 * 117.49840 * 8.61773 * 23 22 21 25 25 C 1.53007 * 60.00035 * 252.51363 * 24 23 22 26 26 H 1.09007 * 109.47001 * 299.99642 * 1 2 3 27 27 H 1.08997 * 109.47439 * 59.99475 * 1 2 3 28 28 H 1.09003 * 109.47167 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.10460 * 0.02562 * 4 3 2 30 30 H 1.08000 * 120.76590 * 0.04529 * 7 6 5 31 31 H 1.07996 * 120.14018 * 180.02562 * 8 7 6 32 32 H 1.08007 * 119.33144 * 180.25867 * 9 8 7 33 33 H 0.96988 * 120.00276 * 179.97438 * 15 14 12 34 34 H 1.08004 * 120.02216 * 180.25462 * 20 5 4 35 35 H 1.07999 * 119.89797 * 180.02562 * 21 20 5 36 36 H 1.08993 * 115.55209 * 154.32784 * 23 22 21 37 37 H 1.08999 * 117.49809 * 0.02562 * 24 23 22 38 38 H 1.08995 * 117.49956 * 145.02446 * 24 23 22 39 39 H 1.09003 * 117.49324 * 252.51238 * 25 24 23 40 40 H 1.09000 * 117.49639 * 107.48766 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2915 2.3717 0.0050 5 6 1.9293 3.6133 -0.0003 6 6 1.1310 4.8574 -0.0003 7 6 0.0969 5.0400 -0.9213 8 6 -0.6212 6.2224 -0.8814 9 6 -0.3015 7.1917 0.0629 10 7 0.6724 7.0106 0.9245 11 6 1.4000 5.8891 0.9349 12 6 2.4369 5.7326 1.8748 13 1 3.0250 4.8269 1.8843 14 6 2.7050 6.7520 2.7985 15 7 1.9923 7.8475 2.7880 16 14 4.0800 6.5442 4.0458 17 1 4.7305 5.2238 3.8500 18 1 5.0839 7.6225 3.8599 19 1 3.5190 6.6215 5.4185 20 6 3.3252 3.6758 0.0001 21 6 4.0667 2.5129 0.0000 22 6 3.4328 1.2832 0.0001 23 6 4.2504 0.0173 0.0006 24 6 5.7608 0.1518 0.2043 25 6 5.2039 -0.2083 -1.1745 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2129 2.3167 0.0094 30 1 -0.1371 4.2759 -1.6478 31 1 -1.4265 6.3916 -1.5808 32 1 -0.8688 8.1103 0.0911 33 1 2.1776 8.5527 3.4275 34 1 3.8233 4.6341 0.0001 35 1 5.1455 2.5623 0.0007 36 1 3.7608 -0.8584 0.4267 37 1 6.1631 1.1560 0.3384 38 1 6.2652 -0.6353 0.7647 39 1 5.3419 -1.2325 -1.5212 40 1 5.2399 0.5590 -1.9479 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244894774.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:00 Heat of formation + Delta-G solvation = 28.714441 kcal Electronic energy + Delta-G solvation = -23000.974605 eV Core-core repulsion = 19745.916664 eV Total energy + Delta-G solvation = -3255.057941 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.30085 -40.01813 -38.69680 -37.31984 -35.58543 -33.38764 -32.22146 -31.01248 -30.23778 -28.00257 -27.62930 -25.14767 -23.58062 -23.28946 -22.74024 -22.29240 -21.06760 -19.42145 -18.74389 -17.61704 -17.21854 -16.66102 -16.57385 -16.28432 -16.04002 -15.85297 -15.46338 -15.07081 -14.57878 -14.49273 -14.02038 -13.86439 -13.59974 -13.38320 -12.96433 -12.90465 -12.85007 -12.75951 -12.35828 -12.32042 -12.06968 -11.94865 -11.82534 -11.65092 -11.32244 -11.24720 -11.14927 -10.20823 -9.77916 -9.53077 -9.33841 -8.70754 -8.33813 -6.49448 0.21489 0.59352 0.93660 1.21107 1.37729 1.50280 1.52723 2.19279 2.43440 2.75176 2.82940 3.24058 3.67639 3.87043 3.97270 4.07502 4.12291 4.25059 4.27694 4.32524 4.37227 4.38883 4.46503 4.54509 4.61061 4.69358 4.73601 4.81561 4.86605 4.96547 5.03703 5.13843 5.20745 5.24613 5.33093 5.37855 5.51845 5.61230 5.67436 5.77861 5.93801 5.99532 6.15935 6.29679 6.52462 6.68970 6.95671 8.14517 8.38934 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012899 B = 0.005736 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.208842 B = 4880.379288 C = 6361.294650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.323 6.323 3 C 0.125 3.875 4 C -0.215 4.215 5 C 0.033 3.967 6 C -0.246 4.246 7 C -0.042 4.042 8 C -0.313 4.313 9 C 0.110 3.890 10 N -0.520 5.520 11 C 0.237 3.763 12 C -0.447 4.447 13 H 0.098 0.902 14 C 0.025 3.975 15 N -0.748 5.748 16 Si 0.975 3.025 17 H -0.253 1.253 18 H -0.262 1.262 19 H -0.266 1.266 20 C -0.153 4.153 21 C -0.084 4.084 22 C -0.109 4.109 23 C -0.115 4.115 24 C -0.172 4.172 25 C -0.163 4.163 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.139 0.861 33 H 0.280 0.720 34 H 0.112 0.888 35 H 0.146 0.854 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.328 -13.457 -3.971 14.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.237 6.237 3 C 0.080 3.920 4 C -0.234 4.234 5 C 0.032 3.968 6 C -0.251 4.251 7 C -0.066 4.066 8 C -0.335 4.335 9 C -0.056 4.056 10 N -0.233 5.233 11 C 0.113 3.887 12 C -0.477 4.477 13 H 0.116 0.884 14 C -0.198 4.198 15 N -0.370 5.370 16 Si 0.795 3.205 17 H -0.176 1.176 18 H -0.187 1.187 19 H -0.191 1.191 20 C -0.171 4.171 21 C -0.102 4.102 22 C -0.110 4.110 23 C -0.133 4.133 24 C -0.209 4.209 25 C -0.200 4.200 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.156 0.844 33 H 0.091 0.909 34 H 0.130 0.870 35 H 0.163 0.837 36 H 0.129 0.871 37 H 0.115 0.885 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.593 -12.807 -3.233 13.689 hybrid contribution -0.505 0.170 -0.087 0.540 sum 3.089 -12.637 -3.320 13.426 Atomic orbital electron populations 1.23258 0.77281 1.05337 1.01513 1.85992 1.22597 1.26186 1.88929 1.18670 0.91808 0.83968 0.97518 1.21333 0.99873 0.91355 1.10843 1.18509 0.92923 0.91368 0.93986 1.19676 1.03633 0.97308 1.04463 1.21229 0.92843 0.96620 0.95896 1.21561 1.07430 0.97693 1.06856 1.23061 0.93757 0.97925 0.90900 1.68707 1.07758 1.22835 1.23970 1.18949 0.91800 0.86723 0.91197 1.20144 1.13012 1.02964 1.11607 0.88431 1.27022 0.99185 0.94005 0.99560 1.70208 1.33034 1.04520 1.29191 0.85254 0.77772 0.80074 0.77416 1.17592 1.18663 1.19112 1.21239 0.93310 0.98509 1.04045 1.20914 1.00371 0.90322 0.98552 1.18656 0.89925 0.94743 1.07675 1.20720 0.91342 0.95845 1.05417 1.23167 0.94175 1.03676 0.99853 1.23066 1.02213 1.03277 0.91430 0.93161 0.92478 0.85490 0.85528 0.86048 0.85381 0.84375 0.90914 0.86962 0.83670 0.87121 0.88467 0.86908 0.87010 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.57 16 2 O -0.32 -9.60 9.66 -92.45 -0.89 -10.49 16 3 C 0.13 4.32 6.65 22.47 0.15 4.47 16 4 C -0.22 -8.21 8.54 22.64 0.19 -8.02 16 5 C 0.03 1.44 5.02 -20.05 -0.10 1.34 16 6 C -0.25 -12.06 5.53 -19.51 -0.11 -12.17 16 7 C -0.04 -1.84 9.67 22.66 0.22 -1.62 16 8 C -0.31 -13.54 10.10 22.50 0.23 -13.31 16 9 C 0.11 5.32 11.17 84.97 0.95 6.27 16 10 N -0.52 -29.17 7.85 -188.43 -1.48 -30.65 16 11 C 0.24 13.10 6.56 40.38 0.26 13.36 16 12 C -0.45 -24.08 7.96 23.37 0.19 -23.89 16 13 H 0.10 5.03 5.24 -2.91 -0.02 5.02 16 14 C 0.02 1.27 5.50 85.33 0.47 1.74 16 15 N -0.75 -40.25 11.46 21.86 0.25 -40.00 16 16 Si 0.97 38.26 29.56 68.60 2.03 40.29 16 17 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 18 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 19 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 20 C -0.15 -6.25 7.56 22.56 0.17 -6.08 16 21 C -0.08 -2.85 9.28 22.22 0.21 -2.64 16 22 C -0.11 -3.56 5.63 -19.69 -0.11 -3.68 16 23 C -0.12 -2.97 5.74 -11.54 -0.07 -3.04 16 24 C -0.17 -3.55 9.86 30.60 0.30 -3.25 16 25 C -0.16 -3.39 10.16 30.60 0.31 -3.08 16 26 H 0.05 1.17 7.65 -2.38 -0.02 1.15 16 27 H 0.06 1.23 7.67 -2.39 -0.02 1.21 16 28 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.13 4.53 6.29 -2.91 -0.02 4.51 16 30 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 31 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 32 H 0.14 5.86 8.06 -2.91 -0.02 5.84 16 33 H 0.28 13.56 8.29 -92.72 -0.77 12.79 16 34 H 0.11 4.88 7.23 -2.91 -0.02 4.86 16 35 H 0.15 4.09 6.00 -2.91 -0.02 4.07 16 36 H 0.11 2.82 7.75 -2.39 -0.02 2.81 16 37 H 0.10 2.03 6.16 -2.39 -0.01 2.01 16 38 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -64.63 333.61 5.34 -59.29 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: 1.06 Total: 33.58 kcal Atomic # 6 Polarization: -56.40 SS G_CDS: 4.37 Total: -52.03 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -1.23 Total: -70.64 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.89 Total: -10.49 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -64.63 5.34 -59.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244894774.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.006 kcal (2) G-P(sol) polarization free energy of solvation -64.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds