Wall clock time and date at job start Tue Mar 31 2020 06:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35678 * 116.99802 * 2 1 4 4 N 1.32342 * 119.64742 * 359.97438 * 3 2 1 5 5 C 1.32317 * 121.57155 * 179.97438 * 4 3 2 6 6 O 1.35671 * 119.64895 * 179.97438 * 5 4 3 7 7 C 1.42900 * 116.99917 * 0.02562 * 6 5 4 8 8 C 1.38799 * 120.70181 * 0.02562 * 5 4 3 9 9 Si 1.86794 * 120.38421 * 180.02562 * 8 5 4 10 10 C 1.86303 * 109.47064 * 90.00055 * 9 8 5 11 11 C 1.86299 * 109.47449 * 209.99895 * 9 8 5 12 12 C 1.86299 * 109.47176 * 330.00113 * 9 8 5 13 13 C 1.38537 * 119.23592 * 359.76567 * 8 5 4 14 14 C 1.38585 * 118.54838 * 0.47543 * 13 8 5 15 15 C 1.50698 * 120.38254 * 179.78324 * 14 13 8 16 16 C 1.50697 * 109.46993 * 99.72130 * 15 14 13 17 17 H 1.07991 * 120.00449 * 359.72131 * 16 15 14 18 18 C 1.37885 * 119.99686 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.72095 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.72528 * 18 16 15 21 21 H 1.48490 * 109.47339 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47239 * 120.00108 * 20 18 16 23 23 H 1.48504 * 109.46636 * 239.99667 * 20 18 16 24 24 H 1.09004 * 109.47569 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47271 * 300.00006 * 1 2 3 26 26 H 1.09004 * 109.47437 * 59.99912 * 1 2 3 27 27 H 1.08991 * 109.47339 * 60.00132 * 7 6 5 28 28 H 1.09009 * 109.46605 * 179.97438 * 7 6 5 29 29 H 1.09004 * 109.46943 * 299.99482 * 7 6 5 30 30 H 1.08999 * 109.47512 * 60.00057 * 10 9 8 31 31 H 1.08994 * 109.47619 * 180.02562 * 10 9 8 32 32 H 1.09004 * 109.47189 * 299.99864 * 10 9 8 33 33 H 1.08998 * 109.46985 * 60.00191 * 11 9 8 34 34 H 1.09003 * 109.47428 * 180.02562 * 11 9 8 35 35 H 1.09008 * 109.46993 * 300.00028 * 11 9 8 36 36 H 1.09004 * 109.47220 * 60.00048 * 12 9 8 37 37 H 1.09003 * 109.47058 * 179.97438 * 12 9 8 38 38 H 1.08998 * 109.47141 * 299.99738 * 12 9 8 39 39 H 1.08005 * 120.73113 * 180.23492 * 13 8 5 40 40 H 1.08998 * 109.47083 * 339.71545 * 15 14 13 41 41 H 1.09001 * 109.46875 * 219.71808 * 15 14 13 42 42 H 0.97000 * 119.99651 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3173 2.3144 -0.0005 5 6 1.8780 3.5128 0.0000 6 8 1.0945 4.6204 -0.0011 7 6 -0.3196 4.4147 -0.0022 8 6 3.2593 3.6490 0.0005 9 14 4.0415 5.3452 0.0019 10 6 4.3010 5.9080 1.7589 11 6 5.6832 5.2729 -0.8758 12 6 2.9205 6.5468 -0.8758 13 6 4.0512 2.5122 0.0055 14 6 3.4310 1.2729 -0.0003 15 6 4.2525 0.0095 -0.0002 16 6 4.3193 -0.5460 1.3991 17 1 3.8209 -0.0329 2.2082 18 6 5.0211 -1.7067 1.6472 19 7 5.6275 -2.3318 0.6618 20 14 5.1103 -2.3911 3.3830 21 1 4.3503 -1.5076 4.3032 22 1 4.5233 -3.7549 3.4081 23 1 6.5289 -2.4547 3.8176 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.6059 3.8543 0.8877 28 1 -0.8271 5.3794 -0.0025 29 1 -0.6045 3.8536 -0.8923 30 1 4.9569 5.2050 2.2725 31 1 4.7570 6.8979 1.7598 32 1 3.3405 5.9504 2.2724 33 1 5.5314 4.9437 -1.9037 34 1 6.1399 6.2626 -0.8746 35 1 6.3392 4.5698 -0.3622 36 1 1.9600 6.5892 -0.3622 37 1 3.3768 7.5367 -0.8746 38 1 2.7687 6.2176 -1.9038 39 1 5.1285 2.5901 0.0098 40 1 5.2601 0.2313 -0.3517 41 1 3.7905 -0.7242 -0.6607 42 1 6.1209 -3.1485 0.8363 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250058454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:38 Heat of formation + Delta-G solvation = -80.755101 kcal Electronic energy + Delta-G solvation = -22125.268262 eV Core-core repulsion = 18921.360893 eV Total energy + Delta-G solvation = -3203.907369 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.139 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.29577 -38.41529 -36.55719 -33.50933 -31.76689 -30.41730 -28.43575 -27.92853 -27.32895 -27.25540 -27.10565 -25.69506 -23.33484 -22.21037 -20.78796 -18.37349 -17.37480 -16.34245 -15.80028 -15.34345 -15.03725 -14.76065 -14.61840 -13.82459 -13.33756 -13.12647 -13.02539 -12.91258 -12.72332 -12.67296 -12.31436 -12.23610 -12.17329 -12.01446 -11.96935 -11.65889 -11.39176 -11.24911 -11.15713 -10.88540 -10.61278 -10.37920 -10.27119 -9.84725 -9.78596 -9.50171 -9.39977 -8.97697 -8.82832 -8.34000 -7.27066 -5.96252 -3.98413 1.74448 2.01308 2.91244 3.04101 3.16292 3.32979 3.40372 3.44699 3.45653 3.68503 3.85313 4.39563 4.54963 4.84971 5.34489 5.38451 5.42473 5.60920 5.65124 5.67918 5.74201 5.76659 5.77780 5.80190 5.83670 5.84319 5.84845 5.91788 5.95031 6.21056 6.49667 6.55456 6.59396 6.66627 6.80806 7.14064 7.35938 7.61882 7.77212 7.97815 7.98690 8.36181 8.41963 9.04800 9.63829 11.13532 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.014664 B = 0.005375 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.919911 B = 5208.473941 C = 6367.060882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.280 6.280 3 C 0.358 3.642 4 N -0.605 5.605 5 C 0.350 3.650 6 O -0.307 6.307 7 C 0.041 3.959 8 C -0.476 4.476 9 Si 1.070 2.930 10 C -0.445 4.445 11 C -0.448 4.448 12 C -0.436 4.436 13 C 0.001 3.999 14 C -0.143 4.143 15 C 0.065 3.935 16 C -0.500 4.500 17 H 0.053 0.947 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.090 0.910 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.139 0.861 40 H 0.028 0.972 41 H 0.033 0.967 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.468 15.902 -2.803 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.186 6.186 3 C 0.181 3.819 4 N -0.344 5.344 5 C 0.173 3.827 6 O -0.215 6.215 7 C -0.055 4.055 8 C -0.521 4.521 9 Si 1.260 2.740 10 C -0.552 4.552 11 C -0.556 4.556 12 C -0.544 4.544 13 C -0.024 4.024 14 C -0.145 4.145 15 C 0.028 3.972 16 C -0.538 4.538 17 H 0.071 0.929 18 C -0.142 4.142 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.157 0.843 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.134 15.612 -2.833 17.830 hybrid contribution 0.211 -0.780 1.020 1.301 sum -7.923 14.831 -1.812 16.912 Atomic orbital electron populations 1.22729 0.79209 1.02281 1.01234 1.86502 1.20956 1.24043 1.87090 1.19308 0.89047 0.82700 0.90879 1.66623 1.41991 0.98810 1.26985 1.18995 0.88301 0.83365 0.92030 1.86184 1.18605 1.28051 1.88642 1.22718 0.78737 1.01926 1.02071 1.26953 0.94485 1.14695 1.15931 0.77834 0.65834 0.63057 0.67231 1.26091 1.04580 1.05132 1.19424 1.26138 1.17122 1.04031 1.08292 1.26073 1.10830 1.09630 1.07880 1.21051 0.99853 0.89891 0.91569 1.20672 0.91155 0.98942 1.03777 1.18090 0.93442 0.87794 0.97872 1.21049 1.31569 1.08088 0.93137 0.92878 1.24959 0.95631 0.96744 0.96904 1.69964 1.34266 1.18274 1.31006 0.86538 0.77660 0.78917 0.84929 1.19860 1.21026 1.21017 0.89176 0.93105 0.93279 0.92811 0.89302 0.92829 0.91169 0.91692 0.91411 0.91182 0.91527 0.90965 0.90257 0.92180 0.91735 0.84309 0.95403 0.94840 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.38 101.05 1.05 1.71 16 2 O -0.28 -6.06 9.71 -18.74 -0.18 -6.24 16 3 C 0.36 7.75 7.46 -17.14 -0.13 7.62 16 4 N -0.61 -11.58 8.06 -13.40 -0.11 -11.69 16 5 C 0.35 6.06 7.34 -17.13 -0.13 5.94 16 6 O -0.31 -4.42 6.99 -18.72 -0.13 -4.55 16 7 C 0.04 0.48 10.38 101.05 1.05 1.53 16 8 C -0.48 -7.80 4.60 -39.26 -0.18 -7.98 16 9 Si 1.07 12.21 12.01 -169.99 -2.04 10.17 16 10 C -0.45 -5.09 8.65 101.05 0.87 -4.21 16 11 C -0.45 -4.89 8.59 101.05 0.87 -4.02 16 12 C -0.44 -4.67 8.09 101.05 0.82 -3.85 16 13 C 0.00 0.02 9.05 -39.34 -0.36 -0.34 16 14 C -0.14 -3.21 5.10 -104.30 -0.53 -3.74 16 15 C 0.07 1.72 4.78 -29.04 -0.14 1.58 16 16 C -0.50 -14.24 9.09 -34.44 -0.31 -14.55 16 17 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 19 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 20 Si 0.89 21.93 29.54 -169.99 -5.02 16.90 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 26 H 0.05 0.72 8.10 -51.93 -0.42 0.30 16 27 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 28 H 0.09 0.75 8.14 -51.92 -0.42 0.32 16 29 H 0.05 0.63 8.10 -51.93 -0.42 0.21 16 30 H 0.07 0.84 7.96 -51.93 -0.41 0.43 16 31 H 0.06 0.63 7.96 -51.93 -0.41 0.21 16 32 H 0.07 0.79 7.96 -51.93 -0.41 0.38 16 33 H 0.07 0.76 7.96 -51.93 -0.41 0.35 16 34 H 0.07 0.62 7.96 -51.93 -0.41 0.21 16 35 H 0.07 0.81 7.78 -51.92 -0.40 0.41 16 36 H 0.08 0.88 6.30 -51.93 -0.33 0.56 16 37 H 0.06 0.55 7.96 -51.93 -0.41 0.13 16 38 H 0.06 0.70 7.96 -51.93 -0.41 0.29 16 39 H 0.14 2.34 7.63 -52.48 -0.40 1.94 16 40 H 0.03 0.74 8.03 -51.93 -0.42 0.32 16 41 H 0.03 0.95 7.86 -51.93 -0.41 0.54 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 357.97 15.07 5.39 5.39 Total: -1.00 -32.41 357.97 -5.49 -37.89 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -6.92 Total: -3.17 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 2.79 Total: -18.74 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.63 Total: -37.65 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.31 Total: -10.79 kcal Atomic # 14 Polarization: 34.14 SS G_CDS: -7.06 Total: 27.08 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.41 -5.49 -37.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.862 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds