Wall clock time and date at job start Tue Mar 31 2020 06:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35678 * 116.99802 * 2 1 4 4 N 1.32342 * 119.64742 * 359.97438 * 3 2 1 5 5 C 1.32317 * 121.57155 * 179.97438 * 4 3 2 6 6 O 1.35671 * 119.64895 * 179.97438 * 5 4 3 7 7 C 1.42900 * 116.99917 * 0.02562 * 6 5 4 8 8 C 1.38799 * 120.70181 * 0.02562 * 5 4 3 9 9 Si 1.86794 * 120.38421 * 180.02562 * 8 5 4 10 10 C 1.86303 * 109.47064 * 90.00055 * 9 8 5 11 11 C 1.86299 * 109.47449 * 209.99895 * 9 8 5 12 12 C 1.86299 * 109.47176 * 330.00113 * 9 8 5 13 13 C 1.38537 * 119.23592 * 359.76567 * 8 5 4 14 14 C 1.38585 * 118.54838 * 0.47543 * 13 8 5 15 15 C 1.50698 * 120.38254 * 179.78324 * 14 13 8 16 16 C 1.50697 * 109.46993 * 99.72130 * 15 14 13 17 17 H 1.07991 * 120.00449 * 359.72131 * 16 15 14 18 18 C 1.37885 * 119.99686 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.72095 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.72528 * 18 16 15 21 21 H 1.48490 * 109.47339 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47239 * 120.00108 * 20 18 16 23 23 H 1.48504 * 109.46636 * 239.99667 * 20 18 16 24 24 H 1.09004 * 109.47569 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47271 * 300.00006 * 1 2 3 26 26 H 1.09004 * 109.47437 * 59.99912 * 1 2 3 27 27 H 1.08991 * 109.47339 * 60.00132 * 7 6 5 28 28 H 1.09009 * 109.46605 * 179.97438 * 7 6 5 29 29 H 1.09004 * 109.46943 * 299.99482 * 7 6 5 30 30 H 1.08999 * 109.47512 * 60.00057 * 10 9 8 31 31 H 1.08994 * 109.47619 * 180.02562 * 10 9 8 32 32 H 1.09004 * 109.47189 * 299.99864 * 10 9 8 33 33 H 1.08998 * 109.46985 * 60.00191 * 11 9 8 34 34 H 1.09003 * 109.47428 * 180.02562 * 11 9 8 35 35 H 1.09008 * 109.46993 * 300.00028 * 11 9 8 36 36 H 1.09004 * 109.47220 * 60.00048 * 12 9 8 37 37 H 1.09003 * 109.47058 * 179.97438 * 12 9 8 38 38 H 1.08998 * 109.47141 * 299.99738 * 12 9 8 39 39 H 1.08005 * 120.73113 * 180.23492 * 13 8 5 40 40 H 1.08998 * 109.47083 * 339.71545 * 15 14 13 41 41 H 1.09001 * 109.46875 * 219.71808 * 15 14 13 42 42 H 0.97000 * 119.99651 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3173 2.3144 -0.0005 5 6 1.8780 3.5128 0.0000 6 8 1.0945 4.6204 -0.0011 7 6 -0.3196 4.4147 -0.0022 8 6 3.2593 3.6490 0.0005 9 14 4.0415 5.3452 0.0019 10 6 4.3010 5.9080 1.7589 11 6 5.6832 5.2729 -0.8758 12 6 2.9205 6.5468 -0.8758 13 6 4.0512 2.5122 0.0055 14 6 3.4310 1.2729 -0.0003 15 6 4.2525 0.0095 -0.0002 16 6 4.3193 -0.5460 1.3991 17 1 3.8209 -0.0329 2.2082 18 6 5.0211 -1.7067 1.6472 19 7 5.6275 -2.3318 0.6618 20 14 5.1103 -2.3911 3.3830 21 1 4.3503 -1.5076 4.3032 22 1 4.5233 -3.7549 3.4081 23 1 6.5289 -2.4547 3.8176 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.6059 3.8543 0.8877 28 1 -0.8271 5.3794 -0.0025 29 1 -0.6045 3.8536 -0.8923 30 1 4.9569 5.2050 2.2725 31 1 4.7570 6.8979 1.7598 32 1 3.3405 5.9504 2.2724 33 1 5.5314 4.9437 -1.9037 34 1 6.1399 6.2626 -0.8746 35 1 6.3392 4.5698 -0.3622 36 1 1.9600 6.5892 -0.3622 37 1 3.3768 7.5367 -0.8746 38 1 2.7687 6.2176 -1.9038 39 1 5.1285 2.5901 0.0098 40 1 5.2601 0.2313 -0.3517 41 1 3.7905 -0.7242 -0.6607 42 1 6.1209 -3.1485 0.8363 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250058454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:37 Heat of formation + Delta-G solvation = -100.564801 kcal Electronic energy + Delta-G solvation = -22126.127275 eV Core-core repulsion = 18921.360893 eV Total energy + Delta-G solvation = -3204.766382 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74507 -39.77552 -38.00268 -35.50536 -33.54524 -31.95715 -29.30285 -29.29551 -28.72715 -28.18084 -28.02642 -27.13068 -25.21982 -23.64472 -22.49520 -19.76195 -18.77984 -18.50410 -17.18615 -16.81444 -16.61980 -16.37735 -15.90515 -15.35687 -14.67820 -14.50921 -14.31990 -14.03956 -13.94740 -13.71074 -13.67188 -13.58143 -13.31222 -13.04452 -12.96038 -12.84598 -12.78035 -12.76922 -12.57112 -12.46744 -12.40777 -12.16227 -11.72034 -11.35323 -11.18512 -10.89976 -10.64437 -10.58331 -10.34916 -10.29035 -8.83020 -8.14656 -6.27289 0.29858 0.48023 1.37856 1.38305 1.51388 1.85896 2.10929 2.22829 2.25045 2.39960 2.41463 2.82696 2.96601 3.14399 3.46103 4.22898 4.28459 4.38587 4.42017 4.47057 4.52736 4.65144 4.66326 4.80387 4.87759 4.93619 4.95267 4.98347 5.00582 5.06786 5.13211 5.22395 5.35350 5.61210 5.66557 5.73270 5.76359 5.76757 5.87401 6.01339 6.21866 6.54797 6.81249 6.88037 7.39277 8.93502 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.014664 B = 0.005375 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.919911 B = 5208.473941 C = 6367.060882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.316 6.316 3 C 0.341 3.659 4 N -0.604 5.604 5 C 0.347 3.653 6 O -0.297 6.297 7 C 0.033 3.967 8 C -0.485 4.485 9 Si 1.113 2.887 10 C -0.451 4.451 11 C -0.454 4.454 12 C -0.434 4.434 13 C 0.001 3.999 14 C -0.186 4.186 15 C 0.081 3.919 16 C -0.514 4.514 17 H 0.043 0.957 18 C 0.007 3.993 19 N -0.929 5.929 20 Si 0.960 3.040 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.272 1.272 24 H 0.112 0.888 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.130 0.870 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.152 0.848 40 H 0.010 0.990 41 H -0.002 1.002 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.013 18.691 -2.018 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.222 6.222 3 C 0.165 3.835 4 N -0.344 5.344 5 C 0.170 3.830 6 O -0.204 6.204 7 C -0.062 4.062 8 C -0.523 4.523 9 Si 1.300 2.700 10 C -0.558 4.558 11 C -0.562 4.562 12 C -0.543 4.543 13 C -0.024 4.024 14 C -0.189 4.189 15 C 0.043 3.957 16 C -0.552 4.552 17 H 0.061 0.939 18 C -0.191 4.191 19 N -0.570 5.570 20 Si 0.785 3.215 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.197 1.197 24 H 0.130 0.870 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.148 0.852 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.169 0.831 40 H 0.029 0.971 41 H 0.016 0.984 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.715 18.365 -2.046 20.431 hybrid contribution 0.274 -1.538 0.733 1.726 sum -8.441 16.827 -1.313 18.871 Atomic orbital electron populations 1.22977 0.76754 1.04006 1.01899 1.86440 1.23690 1.24740 1.87361 1.19295 0.88955 0.83399 0.91895 1.66652 1.41699 0.98855 1.27184 1.19451 0.89328 0.83566 0.90673 1.86221 1.19968 1.26248 1.87977 1.23037 0.77149 1.04341 1.01671 1.28145 0.94382 1.16776 1.13032 0.77397 0.65597 0.59575 0.67400 1.26134 1.04431 1.06277 1.18948 1.26175 1.16859 1.05163 1.07997 1.26003 1.10407 1.10443 1.07411 1.21290 1.00847 0.89465 0.90793 1.20503 0.91750 0.98605 1.08003 1.17724 0.92766 0.89062 0.96132 1.21278 1.31511 1.08546 0.93894 0.93856 1.25822 0.95094 0.96957 1.01213 1.70080 1.34909 1.18781 1.33230 0.85475 0.78172 0.78163 0.79692 1.19518 1.20301 1.19744 0.86993 0.92726 0.92179 0.93395 0.85210 0.93091 0.92132 0.89404 0.91793 0.91365 0.89357 0.91644 0.90471 0.89889 0.91902 0.83084 0.97136 0.98399 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.25 10.38 113.37 1.18 2.43 16 2 O -0.32 -14.33 9.71 -89.96 -0.87 -15.21 16 3 C 0.34 15.39 7.46 84.74 0.63 16.02 16 4 N -0.60 -23.32 8.06 -421.97 -3.40 -26.72 16 5 C 0.35 11.76 7.34 84.75 0.62 12.38 16 6 O -0.30 -7.87 6.99 -89.88 -0.63 -8.50 16 7 C 0.03 0.68 10.38 113.37 1.18 1.86 16 8 C -0.48 -15.55 4.60 22.48 0.10 -15.44 16 9 Si 1.11 22.56 12.01 68.60 0.82 23.38 16 10 C -0.45 -9.04 8.65 113.37 0.98 -8.05 16 11 C -0.45 -8.78 8.59 113.37 0.97 -7.81 16 12 C -0.43 -7.64 8.09 113.37 0.92 -6.72 16 13 C 0.00 0.02 9.05 22.42 0.20 0.23 16 14 C -0.19 -8.79 5.10 -19.66 -0.10 -8.89 16 15 C 0.08 4.52 4.78 29.10 0.14 4.66 16 16 C -0.51 -30.56 9.09 25.60 0.23 -30.33 16 17 H 0.04 2.59 7.74 -2.92 -0.02 2.57 16 18 C 0.01 0.40 5.46 84.66 0.46 0.86 16 19 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 20 Si 0.96 45.72 29.54 68.60 2.03 47.75 16 21 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 24 H 0.11 3.03 8.14 -2.38 -0.02 3.01 16 25 H 0.05 1.69 8.10 -2.38 -0.02 1.67 16 26 H 0.06 1.77 8.10 -2.38 -0.02 1.75 16 27 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 28 H 0.13 1.67 8.14 -2.38 -0.02 1.66 16 29 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 30 H 0.06 1.33 7.96 -2.39 -0.02 1.31 16 31 H 0.09 1.36 7.96 -2.39 -0.02 1.34 16 32 H 0.06 1.33 7.96 -2.38 -0.02 1.31 16 33 H 0.07 1.35 7.96 -2.39 -0.02 1.33 16 34 H 0.09 1.33 7.96 -2.39 -0.02 1.31 16 35 H 0.06 1.36 7.78 -2.38 -0.02 1.34 16 36 H 0.08 1.42 6.30 -2.38 -0.02 1.40 16 37 H 0.08 1.12 7.96 -2.39 -0.02 1.10 16 38 H 0.06 1.15 7.96 -2.39 -0.02 1.13 16 39 H 0.15 5.25 7.63 -2.91 -0.02 5.23 16 40 H 0.01 0.60 8.03 -2.39 -0.02 0.58 16 41 H 0.00 -0.14 7.86 -2.39 -0.02 -0.16 16 42 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -72.99 357.97 6.73 -66.25 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.98 Total: 8.73 kcal Atomic # 6 Polarization: -46.33 SS G_CDS: 7.52 Total: -38.81 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -3.12 Total: -83.60 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -1.50 Total: -23.71 kcal Atomic # 14 Polarization: 68.28 SS G_CDS: 2.85 Total: 71.13 kcal Total: -72.99 6.73 -66.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.313 kcal (2) G-P(sol) polarization free energy of solvation -72.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds