Wall clock time and date at job start Tue Mar 31 2020 06:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47375 * 40.70336 * 3 2 1 5 5 C 1.36942 * 119.99988 * 274.10731 * 4 3 2 6 6 H 1.07994 * 120.00265 * 185.35397 * 5 4 3 7 7 C 1.38815 * 119.99589 * 5.35705 * 5 4 3 8 8 N 1.31622 * 119.99956 * 24.85311 * 7 5 4 9 9 Si 1.86803 * 119.99849 * 204.85103 * 7 5 4 10 10 H 1.48500 * 109.46853 * 90.00179 * 9 7 5 11 11 H 1.48499 * 109.47349 * 209.99893 * 9 7 5 12 12 H 1.48499 * 109.47166 * 330.00392 * 9 7 5 13 13 C 1.46499 * 120.00336 * 94.11177 * 4 3 2 14 14 C 1.50701 * 109.46774 * 269.99799 * 13 4 3 15 15 C 1.36135 * 120.17731 * 259.99844 * 14 13 4 16 16 C 1.39315 * 120.97105 * 179.97438 * 15 14 13 17 17 C 1.36171 * 120.97379 * 0.02562 * 16 15 14 18 18 C 1.40369 * 119.66859 * 359.97438 * 17 16 15 19 19 C 1.40999 * 121.30271 * 180.02562 * 18 17 16 20 20 O 1.35805 * 120.23222 * 359.95303 * 19 18 17 21 21 C 1.42901 * 117.00425 * 180.02562 * 20 19 18 22 22 C 1.36635 * 119.54390 * 179.97438 * 19 18 17 23 23 C 1.39241 * 120.92668 * 0.02562 * 22 19 18 24 24 C 1.36130 * 121.06128 * 359.97438 * 23 22 19 25 25 C 1.40511 * 120.17150 * 80.26323 * 14 13 4 26 26 H 4.40630 * 5.51408 * 180.02562 * 4 1 2 27 27 H 1.08993 * 109.47538 * 280.69998 * 3 2 1 28 28 H 1.09009 * 109.46899 * 160.69971 * 3 2 1 29 29 H 0.97002 * 119.99787 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.47036 * 150.00395 * 13 4 3 31 31 H 1.08995 * 109.47168 * 29.99940 * 13 4 3 32 32 H 1.08004 * 119.51365 * 359.95914 * 15 14 13 33 33 H 1.07999 * 119.51064 * 180.02562 * 16 15 14 34 34 H 1.08005 * 120.16413 * 179.97438 * 17 16 15 35 35 H 1.08998 * 109.46517 * 299.99181 * 21 20 19 36 36 H 1.08991 * 109.47214 * 59.99564 * 21 20 19 37 37 H 1.09003 * 109.46956 * 180.02562 * 21 20 19 38 38 H 1.07999 * 119.53434 * 179.97438 * 22 19 18 39 39 H 1.08003 * 119.46410 * 179.97438 * 23 22 19 40 40 H 1.08004 * 120.11440 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0462 -0.9007 5 6 3.2836 -2.3284 -0.4434 6 1 3.7247 -3.0810 -1.0800 7 6 2.8673 -2.6607 0.8385 8 7 1.9271 -1.9538 1.4290 9 14 3.6415 -4.1111 1.7253 10 1 4.8220 -3.6465 2.4971 11 1 2.6490 -4.7115 2.6525 12 1 4.0689 -5.1282 0.7313 13 6 3.4647 -0.7214 -2.2907 14 6 2.2418 -0.9024 -3.1525 15 6 2.0898 -2.0326 -3.8962 16 6 0.9658 -2.2173 -4.6982 17 6 -0.0128 -1.2726 -4.7617 18 6 0.1093 -0.0942 -4.0088 19 6 -0.8834 0.9064 -4.0482 20 8 -1.9860 0.7456 -4.8245 21 6 -2.9476 1.8026 -4.8129 22 6 -0.7281 2.0393 -3.3003 23 6 0.3969 2.2199 -2.5000 24 6 1.3743 1.2742 -2.4385 25 6 1.2550 0.0969 -3.1971 26 1 -1.0497 -0.0001 -0.0004 27 1 3.0094 -0.1900 1.0097 28 1 3.0089 0.9708 -0.3397 29 1 1.6359 -2.1863 2.3246 30 1 4.2568 -1.3835 -2.6403 31 1 3.8024 0.3131 -2.3517 32 1 2.8521 -2.7971 -3.8640 33 1 0.8692 -3.1233 -5.2782 34 1 -0.8785 -1.4292 -5.3882 35 1 -3.3214 1.9424 -3.7986 36 1 -2.4786 2.7242 -5.1575 37 1 -3.7763 1.5471 -5.4732 38 1 -1.4883 2.8058 -3.3309 39 1 0.4957 3.1248 -1.9187 40 1 2.2403 1.4299 -1.8123 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308963242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:53 Heat of formation + Delta-G solvation = 104.835624 kcal Electronic energy + Delta-G solvation = -23852.087824 eV Core-core repulsion = 20600.330746 eV Total energy + Delta-G solvation = -3251.757079 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.38073 -38.46066 -36.09792 -35.57072 -32.55316 -31.39615 -30.57421 -29.90856 -28.57167 -27.17304 -26.15589 -25.62486 -22.66331 -22.44217 -21.92330 -19.87867 -17.75401 -17.40205 -16.91192 -16.28910 -16.24560 -15.62195 -15.36264 -14.97330 -14.58332 -13.83907 -13.71637 -13.50997 -13.26091 -12.88205 -12.79290 -12.62285 -12.27198 -11.93778 -11.67367 -11.39104 -11.29834 -11.13098 -10.89752 -10.72812 -10.58416 -10.42524 -10.27002 -10.16268 -9.92388 -9.00716 -8.77347 -8.61972 -8.17347 -8.09908 -7.21504 -6.91829 -5.79341 -3.13567 1.15732 1.54245 2.62427 3.36990 3.39626 3.44255 3.45820 3.54528 4.28989 4.52461 4.64973 4.70644 5.01556 5.11364 5.15505 5.24931 5.30287 5.40226 5.46222 5.49060 5.64571 5.71857 5.77367 5.87627 5.91378 5.98277 6.02787 6.20742 6.39974 6.51438 6.60057 6.61266 6.71756 6.75588 6.94796 7.01036 7.14957 7.32373 7.37901 7.52197 7.56621 7.70080 7.73443 8.19853 9.07682 9.41352 9.73330 10.15396 11.20702 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.020303 B = 0.005426 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.761813 B = 5158.976104 C = 5651.242826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.081 4.081 3 C 0.266 3.734 4 N -0.577 5.577 5 C -0.258 4.258 6 H 0.080 0.920 7 C 0.003 3.997 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.287 1.287 11 H -0.294 1.294 12 H -0.280 1.280 13 C 0.178 3.822 14 C -0.074 4.074 15 C -0.111 4.111 16 C -0.118 4.118 17 C -0.114 4.114 18 C -0.062 4.062 19 C 0.126 3.874 20 O -0.317 6.317 21 C 0.030 3.970 22 C -0.217 4.217 23 C -0.096 4.096 24 C -0.110 4.110 25 C -0.003 4.003 26 H 0.180 0.820 27 H 0.096 0.904 28 H 0.036 0.964 29 H 0.255 0.745 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.701 8.000 -10.628 13.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 C -0.084 4.084 3 C 0.141 3.859 4 N -0.295 5.295 5 C -0.387 4.387 6 H 0.098 0.902 7 C -0.196 4.196 8 N -0.526 5.526 9 Si 0.731 3.269 10 H -0.214 1.214 11 H -0.220 1.220 12 H -0.206 1.206 13 C 0.051 3.949 14 C -0.078 4.078 15 C -0.131 4.131 16 C -0.136 4.136 17 C -0.132 4.132 18 C -0.063 4.063 19 C 0.081 3.919 20 O -0.231 6.231 21 C -0.065 4.065 22 C -0.236 4.236 23 C -0.114 4.114 24 C -0.128 4.128 25 C -0.004 4.004 26 H 0.197 0.803 27 H 0.114 0.886 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.747 7.791 -10.528 13.623 hybrid contribution -0.629 -0.837 0.772 1.301 sum -4.377 6.954 -9.756 12.755 Atomic orbital electron populations 1.23892 0.95040 1.06709 1.05988 1.23756 0.94758 0.94676 0.95251 1.18126 0.83384 0.88173 0.96175 1.44597 1.74000 1.07015 1.03841 1.19287 1.34582 0.87511 0.97281 0.90200 1.24826 0.97419 0.98677 0.98704 1.70173 1.26108 1.41537 1.14791 0.86300 0.78902 0.81956 0.79787 1.21392 1.22034 1.20576 1.20031 0.91849 0.99157 0.83857 1.20956 0.99113 0.93270 0.94443 1.20645 0.98019 0.97497 0.96942 1.20731 0.94553 0.98634 0.99672 1.20690 0.99123 0.93544 0.99885 1.17373 0.93676 0.94456 1.00753 1.18587 0.86791 0.94203 0.92311 1.85975 1.29612 1.44194 1.63312 1.22979 0.91136 0.90201 1.02224 1.20654 1.01237 0.98341 1.03321 1.20330 0.93579 0.99173 0.98302 1.21112 1.00197 0.92978 0.98532 1.17696 0.92896 0.94610 0.95168 0.80259 0.88600 0.94581 0.93464 0.91779 0.92787 0.86554 0.86873 0.86267 0.92808 0.92912 0.88682 0.86479 0.86720 0.85289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.06 18.55 29.55 0.55 -6.51 16 2 C -0.08 -1.96 8.34 -37.13 -0.31 -2.27 16 3 C 0.27 6.11 4.80 -6.83 -0.03 6.08 16 4 N -0.58 -13.50 2.48 -177.95 -0.44 -13.94 16 5 C -0.26 -6.71 9.69 -15.06 -0.15 -6.86 16 6 H 0.08 2.04 7.93 -52.49 -0.42 1.63 16 7 C 0.00 0.07 4.96 -17.43 -0.09 -0.01 16 8 N -0.88 -24.71 8.89 55.49 0.49 -24.21 16 9 Si 0.90 21.29 29.62 -169.99 -5.04 16.26 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.18 3.48 5.37 -5.19 -0.03 3.45 16 14 C -0.07 -1.47 5.47 -104.52 -0.57 -2.04 16 15 C -0.11 -2.08 9.57 -39.94 -0.38 -2.46 16 16 C -0.12 -2.02 9.95 -39.92 -0.40 -2.42 16 17 C -0.11 -2.02 9.56 -39.52 -0.38 -2.40 16 18 C -0.06 -1.18 5.75 -106.73 -0.61 -1.79 16 19 C 0.13 2.15 6.67 -39.12 -0.26 1.89 16 20 O -0.32 -4.80 9.73 -19.13 -0.19 -4.99 16 21 C 0.03 0.31 9.81 101.05 0.99 1.30 16 22 C -0.22 -3.39 8.99 -39.79 -0.36 -3.74 16 23 C -0.10 -1.56 9.85 -39.97 -0.39 -1.95 16 24 C -0.11 -2.01 5.89 -39.46 -0.23 -2.24 16 25 C 0.00 -0.06 5.40 -106.84 -0.58 -0.64 16 26 H 0.18 3.89 7.80 -54.10 -0.42 3.47 16 27 H 0.10 2.42 6.37 -51.93 -0.33 2.09 16 28 H 0.04 0.71 6.11 -51.92 -0.32 0.40 16 29 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.06 1.18 7.87 -51.93 -0.41 0.77 16 31 H 0.05 0.94 6.75 -51.93 -0.35 0.59 16 32 H 0.12 2.01 8.00 -52.48 -0.42 1.59 16 33 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 34 H 0.12 1.90 7.62 -52.48 -0.40 1.50 16 35 H 0.05 0.53 7.65 -51.93 -0.40 0.13 16 36 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.12 1.49 6.21 -52.49 -0.33 1.16 16 39 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 40 H 0.13 2.33 3.86 -52.48 -0.20 2.13 16 LS Contribution 327.07 15.07 4.93 4.93 Total: -1.00 -30.60 327.07 -8.26 -38.86 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -4.79 Total: 5.72 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -3.23 Total: -22.62 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.05 Total: -38.16 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.19 Total: -4.99 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.04 Total: 16.26 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.60 -8.26 -38.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308963242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.694 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds