Wall clock time and date at job start Tue Mar 31 2020 06:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47375 * 40.70336 * 3 2 1 5 5 C 1.36942 * 119.99988 * 274.10731 * 4 3 2 6 6 H 1.07994 * 120.00265 * 185.35397 * 5 4 3 7 7 C 1.38815 * 119.99589 * 5.35705 * 5 4 3 8 8 N 1.31622 * 119.99956 * 24.85311 * 7 5 4 9 9 Si 1.86803 * 119.99849 * 204.85103 * 7 5 4 10 10 H 1.48500 * 109.46853 * 90.00179 * 9 7 5 11 11 H 1.48499 * 109.47349 * 209.99893 * 9 7 5 12 12 H 1.48499 * 109.47166 * 330.00392 * 9 7 5 13 13 C 1.46499 * 120.00336 * 94.11177 * 4 3 2 14 14 C 1.50701 * 109.46774 * 269.99799 * 13 4 3 15 15 C 1.36135 * 120.17731 * 259.99844 * 14 13 4 16 16 C 1.39315 * 120.97105 * 179.97438 * 15 14 13 17 17 C 1.36171 * 120.97379 * 0.02562 * 16 15 14 18 18 C 1.40369 * 119.66859 * 359.97438 * 17 16 15 19 19 C 1.40999 * 121.30271 * 180.02562 * 18 17 16 20 20 O 1.35805 * 120.23222 * 359.95303 * 19 18 17 21 21 C 1.42901 * 117.00425 * 180.02562 * 20 19 18 22 22 C 1.36635 * 119.54390 * 179.97438 * 19 18 17 23 23 C 1.39241 * 120.92668 * 0.02562 * 22 19 18 24 24 C 1.36130 * 121.06128 * 359.97438 * 23 22 19 25 25 C 1.40511 * 120.17150 * 80.26323 * 14 13 4 26 26 H 4.40630 * 5.51408 * 180.02562 * 4 1 2 27 27 H 1.08993 * 109.47538 * 280.69998 * 3 2 1 28 28 H 1.09009 * 109.46899 * 160.69971 * 3 2 1 29 29 H 0.97002 * 119.99787 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.47036 * 150.00395 * 13 4 3 31 31 H 1.08995 * 109.47168 * 29.99940 * 13 4 3 32 32 H 1.08004 * 119.51365 * 359.95914 * 15 14 13 33 33 H 1.07999 * 119.51064 * 180.02562 * 16 15 14 34 34 H 1.08005 * 120.16413 * 179.97438 * 17 16 15 35 35 H 1.08998 * 109.46517 * 299.99181 * 21 20 19 36 36 H 1.08991 * 109.47214 * 59.99564 * 21 20 19 37 37 H 1.09003 * 109.46956 * 180.02562 * 21 20 19 38 38 H 1.07999 * 119.53434 * 179.97438 * 22 19 18 39 39 H 1.08003 * 119.46410 * 179.97438 * 23 22 19 40 40 H 1.08004 * 120.11440 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0462 -0.9007 5 6 3.2836 -2.3284 -0.4434 6 1 3.7247 -3.0810 -1.0800 7 6 2.8673 -2.6607 0.8385 8 7 1.9271 -1.9538 1.4290 9 14 3.6415 -4.1111 1.7253 10 1 4.8220 -3.6465 2.4971 11 1 2.6490 -4.7115 2.6525 12 1 4.0689 -5.1282 0.7313 13 6 3.4647 -0.7214 -2.2907 14 6 2.2418 -0.9024 -3.1525 15 6 2.0898 -2.0326 -3.8962 16 6 0.9658 -2.2173 -4.6982 17 6 -0.0128 -1.2726 -4.7617 18 6 0.1093 -0.0942 -4.0088 19 6 -0.8834 0.9064 -4.0482 20 8 -1.9860 0.7456 -4.8245 21 6 -2.9476 1.8026 -4.8129 22 6 -0.7281 2.0393 -3.3003 23 6 0.3969 2.2199 -2.5000 24 6 1.3743 1.2742 -2.4385 25 6 1.2550 0.0969 -3.1971 26 1 -1.0497 -0.0001 -0.0004 27 1 3.0094 -0.1900 1.0097 28 1 3.0089 0.9708 -0.3397 29 1 1.6359 -2.1863 2.3246 30 1 4.2568 -1.3835 -2.6403 31 1 3.8024 0.3131 -2.3517 32 1 2.8521 -2.7971 -3.8640 33 1 0.8692 -3.1233 -5.2782 34 1 -0.8785 -1.4292 -5.3882 35 1 -3.3214 1.9424 -3.7986 36 1 -2.4786 2.7242 -5.1575 37 1 -3.7763 1.5471 -5.4732 38 1 -1.4883 2.8058 -3.3309 39 1 0.4957 3.1248 -1.9187 40 1 2.2403 1.4299 -1.8123 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308963242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:52 Heat of formation + Delta-G solvation = 89.914105 kcal Electronic energy + Delta-G solvation = -23852.734870 eV Core-core repulsion = 20600.330746 eV Total energy + Delta-G solvation = -3252.404124 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.66170 -39.70168 -37.78844 -36.86474 -34.16794 -33.22527 -32.20716 -31.23498 -29.93512 -28.12763 -27.93624 -27.30140 -24.08866 -23.81055 -23.48843 -21.28223 -19.42062 -18.80798 -18.24281 -18.08032 -17.54394 -16.92436 -16.64352 -16.59056 -15.78941 -15.54801 -15.31727 -15.02210 -14.89825 -14.20812 -14.09404 -13.98140 -13.58518 -13.46821 -13.31034 -12.82074 -12.73261 -12.52417 -12.43264 -12.30578 -12.19319 -11.94212 -11.79640 -11.70203 -11.50047 -10.71738 -10.61189 -10.25177 -9.92996 -9.44775 -9.04671 -8.29558 -7.78007 -5.13358 -0.18226 0.19836 1.25731 1.49142 1.52226 1.58437 2.20457 2.34798 2.47001 2.64203 2.81627 3.26999 3.31545 3.85266 3.96509 3.97354 4.06870 4.15713 4.23627 4.29968 4.33763 4.41537 4.48864 4.52737 4.59356 4.70646 4.74300 4.82006 4.91387 4.99548 5.18673 5.25415 5.31256 5.41941 5.45528 5.63560 5.66502 5.67787 5.77891 5.82436 5.99534 6.19832 6.27302 6.52386 7.12538 7.57516 7.85674 8.24416 9.19983 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.020303 B = 0.005426 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.761813 B = 5158.976104 C = 5651.242826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.086 4.086 3 C 0.269 3.731 4 N -0.588 5.588 5 C -0.258 4.258 6 H 0.080 0.920 7 C -0.046 4.046 8 N -0.911 5.911 9 Si 0.956 3.044 10 H -0.285 1.285 11 H -0.307 1.307 12 H -0.274 1.274 13 C 0.178 3.822 14 C -0.096 4.096 15 C -0.120 4.120 16 C -0.126 4.126 17 C -0.115 4.115 18 C -0.091 4.091 19 C 0.122 3.878 20 O -0.331 6.331 21 C 0.019 3.981 22 C -0.217 4.217 23 C -0.090 4.090 24 C -0.131 4.131 25 C -0.020 4.020 26 H 0.194 0.806 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.244 0.756 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.121 0.879 38 H 0.149 0.851 39 H 0.139 0.861 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.540 8.836 -12.027 15.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.332 4.332 2 C -0.089 4.089 3 C 0.144 3.856 4 N -0.307 5.307 5 C -0.387 4.387 6 H 0.098 0.902 7 C -0.242 4.242 8 N -0.556 5.556 9 Si 0.786 3.214 10 H -0.212 1.212 11 H -0.234 1.234 12 H -0.199 1.199 13 C 0.053 3.947 14 C -0.099 4.099 15 C -0.140 4.140 16 C -0.144 4.144 17 C -0.133 4.133 18 C -0.091 4.091 19 C 0.077 3.923 20 O -0.245 6.245 21 C -0.075 4.075 22 C -0.235 4.235 23 C -0.108 4.108 24 C -0.149 4.149 25 C -0.020 4.020 26 H 0.211 0.789 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.142 0.858 33 H 0.159 0.841 34 H 0.153 0.847 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.139 0.861 38 H 0.167 0.833 39 H 0.157 0.843 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.578 8.638 -11.979 15.462 hybrid contribution -0.459 -0.989 1.020 1.493 sum -5.037 7.649 -10.959 14.282 Atomic orbital electron populations 1.24335 0.95737 1.06947 1.06170 1.24058 0.95260 0.94502 0.95100 1.18048 0.83045 0.89469 0.95044 1.44604 1.74263 1.06132 1.05702 1.19515 1.33437 0.88476 0.97307 0.90244 1.25401 0.98205 1.01102 0.99509 1.70326 1.27635 1.43241 1.14401 0.85422 0.77673 0.79744 0.78533 1.21200 1.23416 1.19875 1.20132 0.92076 1.00435 0.82092 1.20980 0.99062 0.94117 0.95750 1.20912 0.98785 0.97273 0.96995 1.21016 0.93950 0.99713 0.99689 1.20977 0.99580 0.93256 0.99520 1.17710 0.94398 0.95681 1.01343 1.18680 0.87078 0.94051 0.92493 1.85956 1.29549 1.46214 1.62762 1.23343 0.90892 0.89822 1.03442 1.20989 1.01599 0.98637 1.02309 1.20683 0.92998 0.99375 0.97727 1.21122 1.01023 0.93467 0.99265 1.17886 0.93238 0.95110 0.95776 0.78890 0.91361 0.91530 0.94579 0.91045 0.90837 0.85834 0.84085 0.84732 0.92211 0.91406 0.86074 0.83346 0.84331 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.81 18.55 74.32 1.38 -13.43 16 2 C -0.09 -4.15 8.34 31.12 0.26 -3.89 16 3 C 0.27 12.40 4.80 84.57 0.41 12.80 16 4 N -0.59 -27.52 2.48 -716.92 -1.78 -29.30 16 5 C -0.26 -13.45 9.69 84.03 0.81 -12.64 16 6 H 0.08 4.05 7.93 -2.91 -0.02 4.03 16 7 C -0.05 -2.51 4.96 84.86 0.42 -2.09 16 8 N -0.91 -51.94 8.89 21.65 0.19 -51.74 16 9 Si 0.96 44.44 29.62 68.60 2.03 46.47 16 10 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.31 -14.77 7.11 99.48 0.71 -14.06 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 C 0.18 6.88 5.37 85.63 0.46 7.34 16 14 C -0.10 -3.77 5.47 -19.80 -0.11 -3.88 16 15 C -0.12 -4.42 9.57 22.04 0.21 -4.21 16 16 C -0.13 -4.17 9.95 22.05 0.22 -3.95 16 17 C -0.12 -3.94 9.56 22.31 0.21 -3.72 16 18 C -0.09 -3.35 5.75 -21.23 -0.12 -3.48 16 19 C 0.12 3.95 6.67 22.57 0.15 4.10 16 20 O -0.33 -9.21 9.73 -91.36 -0.89 -10.10 16 21 C 0.02 0.33 9.81 113.37 1.11 1.44 16 22 C -0.22 -6.21 8.99 22.14 0.20 -6.01 16 23 C -0.09 -2.74 9.85 22.02 0.22 -2.52 16 24 C -0.13 -4.63 5.89 22.35 0.13 -4.50 16 25 C -0.02 -0.76 5.40 -21.30 -0.12 -0.87 16 26 H 0.19 8.27 7.80 -4.43 -0.03 8.24 16 27 H 0.07 3.53 6.37 -2.39 -0.02 3.52 16 28 H 0.07 2.60 6.11 -2.38 -0.01 2.58 16 29 H 0.24 13.91 8.31 -92.71 -0.77 13.14 16 30 H 0.07 2.59 7.87 -2.39 -0.02 2.57 16 31 H 0.07 2.50 6.75 -2.39 -0.02 2.49 16 32 H 0.12 4.20 8.00 -2.91 -0.02 4.18 16 33 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 34 H 0.13 4.06 7.62 -2.91 -0.02 4.04 16 35 H 0.06 0.97 7.65 -2.39 -0.02 0.95 16 36 H 0.07 0.98 7.65 -2.39 -0.02 0.96 16 37 H 0.12 1.44 8.14 -2.39 -0.02 1.43 16 38 H 0.15 3.21 6.21 -2.91 -0.02 3.19 16 39 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.12 4.39 3.86 -2.91 -0.01 4.38 16 Total: -1.00 -65.65 327.07 6.45 -59.19 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 1.05 Total: 24.97 kcal Atomic # 6 Polarization: -45.35 SS G_CDS: 5.85 Total: -39.50 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -1.59 Total: -81.04 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.89 Total: -10.10 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -65.65 6.45 -59.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308963242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.109 kcal (2) G-P(sol) polarization free energy of solvation -65.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds