Wall clock time and date at job start Tue Mar 31 2020 06:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35893 * 116.99883 * 2 1 4 4 C 1.38771 * 120.00902 * 0.02562 * 3 2 1 5 5 C 1.38394 * 120.05938 * 180.02562 * 4 3 2 6 6 F 1.35106 * 119.96037 * 179.97438 * 5 4 3 7 7 C 1.38392 * 120.07525 * 359.97438 * 5 4 3 8 8 C 1.38846 * 120.01661 * 359.97438 * 7 5 4 9 9 N 1.39913 * 120.03097 * 179.97438 * 8 7 5 10 10 C 1.34777 * 120.00115 * 33.34182 * 9 8 7 11 11 O 1.21292 * 119.99840 * 5.27498 * 10 9 8 12 12 C 1.50698 * 120.00261 * 185.27651 * 10 9 8 13 13 C 1.52997 * 109.47152 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46848 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.46902 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47012 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99971 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99670 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00264 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99571 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47265 * 60.00118 * 20 18 16 22 22 H 1.48497 * 109.46878 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47125 * 299.99948 * 20 18 16 24 24 C 1.38596 * 120.00920 * 179.72976 * 3 2 1 25 25 H 1.09005 * 109.46896 * 299.99327 * 1 2 3 26 26 H 1.08994 * 109.47295 * 59.99784 * 1 2 3 27 27 H 1.09007 * 109.46781 * 179.97438 * 1 2 3 28 28 H 1.07994 * 119.96612 * 359.97428 * 4 3 2 29 29 H 1.08001 * 119.98991 * 179.97438 * 7 5 4 30 30 H 0.97006 * 120.00073 * 213.34684 * 9 8 7 31 31 H 1.09004 * 109.46826 * 300.00165 * 12 10 9 32 32 H 1.09000 * 109.46833 * 59.99842 * 12 10 9 33 33 H 1.08996 * 109.47546 * 300.00149 * 13 12 10 34 34 H 1.08997 * 109.46845 * 60.00089 * 13 12 10 35 35 H 1.09002 * 109.47297 * 299.99694 * 14 13 12 36 36 H 1.08997 * 109.47320 * 60.00386 * 14 13 12 37 37 H 1.09002 * 109.46545 * 299.99726 * 15 14 13 38 38 H 1.08997 * 109.47168 * 59.99865 * 15 14 13 39 39 H 0.96999 * 120.00064 * 180.02562 * 19 18 16 40 40 H 1.08009 * 120.03534 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2903 2.3748 0.0005 5 6 1.9175 3.6084 0.0000 6 9 1.1798 4.7404 0.0000 7 6 3.2993 3.6839 -0.0005 8 6 4.0585 2.5214 0.0000 9 7 5.4555 2.5973 -0.0011 10 6 6.0760 3.6081 0.6391 11 8 5.4301 4.3974 1.2956 12 6 7.5722 3.7578 0.5391 13 6 8.0183 4.9754 1.3511 14 6 9.5374 5.1269 1.2501 15 6 9.9836 6.3441 2.0627 16 6 11.4800 6.4930 1.9637 17 1 12.0553 5.7896 1.3800 18 6 12.1146 7.5273 2.6184 19 7 11.4141 8.3842 3.3287 20 14 13.9694 7.7123 2.4951 21 1 14.3550 7.8975 1.0731 22 1 14.4024 8.8943 3.2828 23 1 14.6252 6.4925 3.0310 24 6 3.4300 1.2836 0.0057 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2119 2.3178 0.0005 29 1 3.7873 4.6474 -0.0014 30 1 5.9776 1.9225 -0.4626 31 1 8.0539 2.8623 0.9318 32 1 7.8547 3.8943 -0.5048 33 1 7.5365 5.8706 0.9581 34 1 7.7357 4.8392 2.3950 35 1 10.0188 4.2316 1.6435 36 1 9.8204 5.2628 0.2063 37 1 9.5022 7.2396 1.6696 38 1 9.7006 6.2078 3.1064 39 1 11.8605 9.1120 3.7889 40 1 4.0189 0.3783 0.0105 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323690814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:29 Heat of formation + Delta-G solvation = -113.283348 kcal Electronic energy + Delta-G solvation = -22214.948679 eV Core-core repulsion = 18522.964027 eV Total energy + Delta-G solvation = -3691.984652 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.14463 -40.92999 -39.89648 -37.61331 -35.01293 -34.65860 -32.66551 -30.79080 -30.40520 -29.17563 -27.70577 -25.77011 -23.39002 -23.08721 -21.90316 -20.48770 -20.03260 -19.00649 -17.52527 -16.99493 -16.69979 -16.39522 -16.24599 -16.08284 -15.98152 -15.63030 -15.42237 -14.78246 -14.48237 -14.14567 -13.98947 -13.44815 -12.96857 -12.72075 -12.64455 -12.35297 -12.10430 -11.81371 -11.74394 -11.65175 -11.56499 -10.98922 -10.57734 -10.55418 -10.44807 -10.40328 -9.98310 -9.63604 -9.25804 -9.01334 -8.73008 -8.48567 -8.30818 -5.95538 -3.98307 0.72715 0.95893 2.43725 2.48705 3.03238 3.29180 3.35111 3.39666 3.41701 3.91654 4.46755 4.50027 4.56548 4.62304 4.70346 4.71640 4.87564 4.91145 5.04840 5.20466 5.25835 5.30725 5.39695 5.71395 5.71960 5.79883 5.90453 6.00661 6.07643 6.23315 6.44713 6.50897 6.79142 6.89064 6.96697 7.09866 7.18487 7.72810 7.88453 7.94556 8.05373 8.46816 9.09115 9.65338 11.15686 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.038749 B = 0.002152 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.433019 B =13006.906678 C =13541.190064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.311 6.311 3 C 0.175 3.825 4 C -0.266 4.266 5 C 0.161 3.839 6 F -0.132 7.132 7 C -0.195 4.195 8 C 0.223 3.777 9 N -0.679 5.679 10 C 0.512 3.488 11 O -0.507 6.507 12 C -0.137 4.137 13 C -0.105 4.105 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.522 4.522 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.194 4.194 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.140 0.860 29 H 0.151 0.849 30 H 0.416 0.584 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.261 0.739 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.825 -18.589 -10.079 30.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.129 3.871 4 C -0.287 4.287 5 C 0.141 3.859 6 F -0.111 7.111 7 C -0.217 4.217 8 C 0.127 3.873 9 N -0.325 5.325 10 C 0.301 3.699 11 O -0.380 6.380 12 C -0.176 4.176 13 C -0.143 4.143 14 C -0.148 4.148 15 C -0.017 4.017 16 C -0.560 4.560 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.534 5.534 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.216 4.216 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.121 0.879 28 H 0.158 0.842 29 H 0.169 0.831 30 H 0.252 0.748 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -22.130 -17.955 -9.477 30.032 hybrid contribution 0.835 0.146 -0.229 0.878 sum -21.295 -17.809 -9.706 29.408 Atomic orbital electron populations 1.23137 0.77848 1.04267 1.01763 1.86090 1.21820 1.26122 1.88320 1.18228 0.91289 0.83753 0.93862 1.21067 1.01125 0.91073 1.15399 1.17056 0.88596 0.81566 0.98703 1.91527 1.76796 1.49287 1.93458 1.21030 0.91761 1.00285 1.08584 1.17007 0.83417 0.92048 0.94795 1.43792 1.04056 1.29948 1.54700 1.21452 0.91567 0.79430 0.77405 1.90753 1.67444 1.41598 1.38189 1.21842 0.89015 1.02874 1.03910 1.21491 0.97946 0.95202 0.99677 1.21651 0.91741 1.00839 1.00556 1.19096 0.95704 0.91923 0.95014 1.21238 0.92765 1.11632 1.30356 0.92792 1.25045 0.98176 0.95944 0.95417 1.69959 1.35497 1.15689 1.32267 0.86665 0.85836 0.77466 0.78047 1.20293 1.21322 1.20285 1.20040 0.91845 0.97278 1.12413 0.92286 0.92328 0.87896 0.84184 0.83134 0.74756 0.88567 0.88466 0.91629 0.91619 0.93376 0.93376 0.96570 0.96574 0.92967 0.84108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.59 10.49 -19.40 -0.20 -2.80 16 3 C 0.18 1.66 6.68 -39.25 -0.26 1.40 16 4 C -0.27 -2.56 9.01 -39.33 -0.35 -2.91 16 5 C 0.16 1.88 7.29 -39.47 -0.29 1.60 16 6 F -0.13 -1.65 17.27 2.25 0.04 -1.61 16 7 C -0.20 -2.46 8.63 -39.30 -0.34 -2.80 16 8 C 0.22 2.43 6.27 -83.73 -0.53 1.91 16 9 N -0.68 -6.49 5.34 -9.88 -0.05 -6.54 16 10 C 0.51 6.57 7.57 -10.99 -0.08 6.48 16 11 O -0.51 -8.64 13.67 5.55 0.08 -8.56 16 12 C -0.14 -1.62 5.70 -27.89 -0.16 -1.78 16 13 C -0.11 -1.78 4.50 -26.73 -0.12 -1.90 16 14 C -0.11 -2.20 5.15 -26.73 -0.14 -2.33 16 15 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 16 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -27.43 13.29 55.43 0.74 -26.70 16 20 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C -0.19 -1.82 9.90 -39.24 -0.39 -2.21 16 25 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 26 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 27 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.14 1.03 6.29 -52.49 -0.33 0.70 16 29 H 0.15 2.15 6.41 -52.49 -0.34 1.82 16 30 H 0.42 2.40 8.82 -40.82 -0.36 2.04 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 34 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -34.41 345.12 -7.03 -41.44 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -5.59 Total: -2.44 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -2.22 Total: -14.80 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.68 Total: -33.24 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.13 Total: -11.36 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.41 -7.03 -41.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323690814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.843 kcal (2) G-P(sol) polarization free energy of solvation -34.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds