Wall clock time and date at job start Tue Mar 31 2020 06:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35893 * 116.99883 * 2 1 4 4 C 1.38771 * 120.00902 * 0.02562 * 3 2 1 5 5 C 1.38394 * 120.05938 * 180.02562 * 4 3 2 6 6 F 1.35106 * 119.96037 * 179.97438 * 5 4 3 7 7 C 1.38392 * 120.07525 * 359.97438 * 5 4 3 8 8 C 1.38846 * 120.01661 * 359.97438 * 7 5 4 9 9 N 1.39913 * 120.03097 * 179.97438 * 8 7 5 10 10 C 1.34777 * 120.00115 * 33.34182 * 9 8 7 11 11 O 1.21292 * 119.99840 * 5.27498 * 10 9 8 12 12 C 1.50698 * 120.00261 * 185.27651 * 10 9 8 13 13 C 1.52997 * 109.47152 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46848 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.46902 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47012 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99971 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99670 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00264 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99571 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47265 * 60.00118 * 20 18 16 22 22 H 1.48497 * 109.46878 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47125 * 299.99948 * 20 18 16 24 24 C 1.38596 * 120.00920 * 179.72976 * 3 2 1 25 25 H 1.09005 * 109.46896 * 299.99327 * 1 2 3 26 26 H 1.08994 * 109.47295 * 59.99784 * 1 2 3 27 27 H 1.09007 * 109.46781 * 179.97438 * 1 2 3 28 28 H 1.07994 * 119.96612 * 359.97428 * 4 3 2 29 29 H 1.08001 * 119.98991 * 179.97438 * 7 5 4 30 30 H 0.97006 * 120.00073 * 213.34684 * 9 8 7 31 31 H 1.09004 * 109.46826 * 300.00165 * 12 10 9 32 32 H 1.09000 * 109.46833 * 59.99842 * 12 10 9 33 33 H 1.08996 * 109.47546 * 300.00149 * 13 12 10 34 34 H 1.08997 * 109.46845 * 60.00089 * 13 12 10 35 35 H 1.09002 * 109.47297 * 299.99694 * 14 13 12 36 36 H 1.08997 * 109.47320 * 60.00386 * 14 13 12 37 37 H 1.09002 * 109.46545 * 299.99726 * 15 14 13 38 38 H 1.08997 * 109.47168 * 59.99865 * 15 14 13 39 39 H 0.96999 * 120.00064 * 180.02562 * 19 18 16 40 40 H 1.08009 * 120.03534 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2903 2.3748 0.0005 5 6 1.9175 3.6084 0.0000 6 9 1.1798 4.7404 0.0000 7 6 3.2993 3.6839 -0.0005 8 6 4.0585 2.5214 0.0000 9 7 5.4555 2.5973 -0.0011 10 6 6.0760 3.6081 0.6391 11 8 5.4301 4.3974 1.2956 12 6 7.5722 3.7578 0.5391 13 6 8.0183 4.9754 1.3511 14 6 9.5374 5.1269 1.2501 15 6 9.9836 6.3441 2.0627 16 6 11.4800 6.4930 1.9637 17 1 12.0553 5.7896 1.3800 18 6 12.1146 7.5273 2.6184 19 7 11.4141 8.3842 3.3287 20 14 13.9694 7.7123 2.4951 21 1 14.3550 7.8975 1.0731 22 1 14.4024 8.8943 3.2828 23 1 14.6252 6.4925 3.0310 24 6 3.4300 1.2836 0.0057 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2119 2.3178 0.0005 29 1 3.7873 4.6474 -0.0014 30 1 5.9776 1.9225 -0.4626 31 1 8.0539 2.8623 0.9318 32 1 7.8547 3.8943 -0.5048 33 1 7.5365 5.8706 0.9581 34 1 7.7357 4.8392 2.3950 35 1 10.0188 4.2316 1.6435 36 1 9.8204 5.2628 0.2063 37 1 9.5022 7.2396 1.6696 38 1 9.7006 6.2078 3.1064 39 1 11.8605 9.1120 3.7889 40 1 4.0189 0.3783 0.0105 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323690814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:28 Heat of formation + Delta-G solvation = -135.513215 kcal Electronic energy + Delta-G solvation = -22215.912638 eV Core-core repulsion = 18522.964027 eV Total energy + Delta-G solvation = -3692.948611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.06508 -41.78992 -40.68731 -38.43652 -36.63347 -35.58520 -34.61411 -31.85401 -31.47540 -30.35408 -28.24100 -27.43183 -24.75478 -23.94201 -23.12266 -21.77524 -21.38299 -19.79177 -18.45071 -18.39010 -17.79564 -17.45439 -17.21635 -16.93481 -16.89659 -16.51284 -16.44418 -16.40692 -15.49675 -15.47195 -15.11286 -14.53185 -14.25844 -13.87985 -13.62300 -13.53380 -13.32759 -13.27357 -12.96908 -12.78271 -12.38426 -12.35262 -12.25477 -12.15658 -12.11582 -11.38490 -11.35364 -11.25616 -11.14400 -10.84617 -10.53535 -9.51175 -9.29940 -8.17747 -6.29914 -0.08348 0.13282 1.40964 1.44930 1.48748 1.52730 1.72912 2.37109 2.42883 2.48544 3.08875 3.14898 3.62859 3.86365 3.87720 3.98997 4.03503 4.11128 4.16020 4.35911 4.40367 4.57465 4.65039 4.69718 4.77123 4.85033 4.87984 4.94799 5.02972 5.05673 5.15452 5.19824 5.34663 5.39794 5.58059 5.64863 5.79745 5.89547 6.24363 6.26054 6.34097 6.88790 7.05750 7.39681 8.94173 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.038749 B = 0.002152 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.433019 B =13006.906678 C =13541.190064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.317 6.317 3 C 0.176 3.824 4 C -0.258 4.258 5 C 0.142 3.858 6 F -0.143 7.143 7 C -0.218 4.218 8 C 0.213 3.787 9 N -0.658 5.658 10 C 0.514 3.486 11 O -0.559 6.559 12 C -0.124 4.124 13 C -0.099 4.099 14 C -0.096 4.096 15 C 0.017 3.983 16 C -0.542 4.542 17 H 0.067 0.933 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.970 3.030 21 H -0.264 1.264 22 H -0.287 1.287 23 H -0.264 1.264 24 C -0.185 4.185 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.126 0.874 28 H 0.163 0.837 29 H 0.124 0.876 30 H 0.436 0.564 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.062 0.938 37 H -0.016 1.016 38 H -0.016 1.016 39 H 0.262 0.738 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.237 -21.732 -11.546 32.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.230 6.230 3 C 0.129 3.871 4 C -0.278 4.278 5 C 0.122 3.878 6 F -0.122 7.122 7 C -0.240 4.240 8 C 0.117 3.883 9 N -0.306 5.306 10 C 0.304 3.696 11 O -0.436 6.436 12 C -0.163 4.163 13 C -0.137 4.137 14 C -0.133 4.133 15 C -0.020 4.020 16 C -0.579 4.579 17 H 0.086 0.914 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.794 3.206 21 H -0.189 1.189 22 H -0.212 1.212 23 H -0.189 1.189 24 C -0.206 4.206 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.144 0.856 28 H 0.180 0.820 29 H 0.142 0.858 30 H 0.277 0.723 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.002 0.998 38 H 0.002 0.998 39 H 0.071 0.929 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -21.547 -21.162 -10.987 32.137 hybrid contribution 0.526 1.073 0.236 1.218 sum -21.021 -20.088 -10.751 31.000 Atomic orbital electron populations 1.23467 0.75916 1.06151 1.02561 1.86096 1.23810 1.25199 1.87903 1.18343 0.91522 0.84163 0.93069 1.21263 1.02342 0.90185 1.14050 1.17246 0.88435 0.82103 1.00019 1.91492 1.76933 1.50028 1.93724 1.20976 0.92512 1.00032 1.10459 1.17060 0.83735 0.92086 0.95399 1.43503 1.03799 1.29463 1.53803 1.21579 0.91862 0.79306 0.76872 1.90753 1.68441 1.43694 1.40725 1.21713 0.88412 1.01405 1.04777 1.21277 0.95825 0.97139 0.99464 1.21444 0.93619 0.98180 1.00065 1.19071 0.95089 0.93705 0.94133 1.21740 0.93938 1.11941 1.30324 0.91447 1.26108 1.04008 0.95543 0.94890 1.70126 1.37915 1.16452 1.33357 0.85437 0.78845 0.77750 0.78615 1.18918 1.21212 1.18859 1.20268 0.92219 0.97340 1.10755 0.91717 0.91285 0.85608 0.82001 0.85784 0.72260 0.85281 0.85429 0.93807 0.93730 0.91802 0.91887 0.99801 0.99758 0.92905 0.81538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.32 -4.40 10.49 -92.34 -0.97 -5.37 16 3 C 0.18 2.96 6.68 22.48 0.15 3.11 16 4 C -0.26 -4.65 9.01 22.43 0.20 -4.45 16 5 C 0.14 3.40 7.29 22.34 0.16 3.56 16 6 F -0.14 -3.73 17.27 44.97 0.78 -2.96 16 7 C -0.22 -5.72 8.63 22.45 0.19 -5.52 16 8 C 0.21 4.45 6.27 38.14 0.24 4.69 16 9 N -0.66 -11.43 5.34 -303.57 -1.62 -13.05 16 10 C 0.51 12.82 7.57 87.66 0.66 13.49 16 11 O -0.56 -19.89 13.67 -3.07 -0.04 -19.94 16 12 C -0.12 -2.67 5.70 29.85 0.17 -2.50 16 13 C -0.10 -3.39 4.50 30.59 0.14 -3.25 16 14 C -0.10 -3.76 5.15 30.60 0.16 -3.60 16 15 C 0.02 0.93 4.97 29.85 0.15 1.08 16 16 C -0.54 -31.19 9.11 25.60 0.23 -30.95 16 17 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 18 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 19 N -0.94 -59.14 13.29 21.45 0.28 -58.86 16 20 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 21 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 24 C -0.18 -3.05 9.90 22.49 0.22 -2.82 16 25 H 0.06 0.37 7.66 -2.38 -0.02 0.35 16 26 H 0.07 0.33 7.66 -2.39 -0.02 0.31 16 27 H 0.13 0.25 8.14 -2.38 -0.02 0.24 16 28 H 0.16 2.07 6.29 -2.91 -0.02 2.05 16 29 H 0.12 3.89 6.41 -2.91 -0.02 3.87 16 30 H 0.44 3.61 8.82 -92.70 -0.82 2.80 16 31 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 34 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 37 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 38 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 39 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 40 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -78.73 345.12 4.95 -73.78 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 0.24 Total: 5.69 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 4.26 Total: -26.01 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -1.34 Total: -71.91 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -1.01 Total: -25.30 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.78 Total: -2.96 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -78.73 4.95 -73.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323690814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.736 kcal (2) G-P(sol) polarization free energy of solvation -78.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds