Wall clock time and date at job start Tue Mar 31 2020 06:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35958 * 116.99849 * 2 1 4 4 C 1.38655 * 120.06374 * 0.02562 * 3 2 1 5 5 C 1.38177 * 119.97092 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.95723 * 179.97438 * 5 4 3 7 7 N 1.46892 * 109.47024 * 89.99736 * 6 5 4 8 8 C 1.47850 * 111.00505 * 290.84600 * 7 6 5 9 9 C 1.54897 * 104.79834 * 213.63777 * 8 7 6 10 10 C 1.55137 * 101.65622 * 37.07022 * 9 8 7 11 11 O 1.42899 * 110.70926 * 82.72689 * 10 9 8 12 12 C 1.50706 * 110.85756 * 205.89543 * 10 9 8 13 13 H 1.07991 * 119.99864 * 113.68463 * 12 10 9 14 14 C 1.37875 * 119.99483 * 293.68350 * 12 10 9 15 15 N 1.31511 * 120.00683 * 359.97438 * 14 12 10 16 16 Si 1.86809 * 119.99770 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46791 * 59.99753 * 16 14 12 18 18 H 1.48494 * 109.47099 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46913 * 300.00390 * 16 14 12 20 20 C 1.47449 * 111.00197 * 170.00294 * 7 6 5 21 21 C 1.38267 * 120.09469 * 359.97438 * 5 4 3 22 22 C 1.38251 * 120.12732 * 0.04199 * 21 5 4 23 23 C 1.38338 * 120.03013 * 359.95963 * 22 21 5 24 24 F 1.35100 * 120.04992 * 180.30106 * 23 22 21 25 25 H 1.09003 * 109.47124 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47429 * 300.00272 * 1 2 3 27 27 H 1.09004 * 109.47080 * 60.00777 * 1 2 3 28 28 H 1.08005 * 120.01507 * 359.95751 * 4 3 2 29 29 H 1.08999 * 109.47384 * 210.00325 * 6 5 4 30 30 H 1.09004 * 109.46808 * 330.00075 * 6 5 4 31 31 H 1.09002 * 110.37002 * 332.46869 * 8 7 6 32 32 H 1.08994 * 110.37052 * 94.80283 * 8 7 6 33 33 H 1.09001 * 110.99179 * 278.97655 * 9 8 7 34 34 H 1.09007 * 111.02507 * 155.17602 * 9 8 7 35 35 H 0.96701 * 113.99564 * 66.40158 * 11 10 9 36 36 H 0.96993 * 120.00693 * 179.97438 * 15 14 12 37 37 H 1.08993 * 109.88830 * 242.66451 * 20 7 6 38 38 H 1.09001 * 109.88133 * 3.85570 * 20 7 6 39 39 H 1.08000 * 119.93530 * 180.02562 * 21 5 4 40 40 H 1.08000 * 119.99053 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2922 2.3751 0.0005 5 6 1.9215 3.6052 0.0011 6 6 1.1018 4.8698 0.0011 7 7 0.8349 5.2803 1.3860 8 6 -0.0920 4.3382 2.0487 9 6 -0.9277 5.2172 3.0121 10 6 -1.1000 6.5161 2.1815 11 8 -2.1831 6.3858 1.2585 12 6 -1.3107 7.7054 3.0828 13 1 -0.5646 8.4846 3.1318 14 6 -2.4560 7.7985 3.8447 15 7 -3.3648 6.8499 3.7847 16 14 -2.7169 9.2724 4.9625 17 1 -2.7248 10.5150 4.1494 18 1 -4.0157 9.1341 5.6689 19 1 -1.6171 9.3393 5.9581 20 6 0.2444 6.6306 1.4325 21 6 3.3023 3.6777 0.0016 22 6 4.0579 2.5199 0.0007 23 6 3.4333 1.2856 0.0002 24 9 4.1713 0.1540 0.0055 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 0.2136 2.3200 0.0003 29 1 1.6511 5.6589 -0.5124 30 1 0.1575 4.6907 -0.5132 31 1 -0.7389 3.8613 1.3124 32 1 0.4660 3.5871 2.6078 33 1 -0.3815 5.4133 3.9348 34 1 -1.8934 4.7574 3.2227 35 1 -3.0508 6.3103 1.6786 36 1 -4.1704 6.9152 4.3209 37 1 0.9101 7.3082 1.9669 38 1 0.0746 6.9960 0.4197 39 1 3.7914 4.6406 0.0024 40 1 5.1363 2.5791 0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326614428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:12 Heat of formation + Delta-G solvation = -119.523518 kcal Electronic energy + Delta-G solvation = -24019.115705 eV Core-core repulsion = 20326.860459 eV Total energy + Delta-G solvation = -3692.255246 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.81601 -41.19853 -40.08829 -38.55821 -36.47088 -34.11268 -33.10661 -31.37831 -30.59858 -29.84280 -28.39599 -26.92647 -25.53547 -23.55119 -22.76994 -21.70320 -21.27079 -19.17409 -19.03156 -18.07962 -17.84480 -17.19509 -16.90986 -16.86438 -16.27168 -16.05532 -15.85417 -15.53850 -15.26251 -15.11133 -15.04229 -14.30725 -13.95871 -13.75641 -13.52193 -13.29060 -13.15983 -13.05816 -12.79457 -12.68651 -12.52052 -12.34808 -12.24584 -12.20861 -12.02811 -11.97022 -11.70263 -11.15142 -10.62038 -10.10545 -9.87829 -9.28436 -9.14390 -8.21824 -6.36214 0.06768 0.27934 1.42988 1.43739 1.51208 2.17840 2.39037 2.49052 3.02967 3.21753 3.25979 3.66084 3.74591 3.89797 3.98446 4.24013 4.25438 4.29550 4.31607 4.38415 4.46858 4.48795 4.59077 4.65372 4.68775 4.75816 4.82703 4.96977 4.99012 5.13919 5.20649 5.26603 5.48864 5.54580 5.55187 5.66805 5.81420 5.95250 6.18696 6.20484 6.25677 6.68307 7.34706 7.44318 8.83399 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.028228 B = 0.003560 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.670011 B = 7863.441660 C = 8335.525162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.330 6.330 3 C 0.084 3.916 4 C -0.176 4.176 5 C -0.044 4.044 6 C 0.088 3.912 7 N -0.520 5.520 8 C 0.057 3.943 9 C -0.126 4.126 10 C 0.221 3.779 11 O -0.598 6.598 12 C -0.559 4.559 13 H 0.058 0.942 14 C 0.030 3.970 15 N -0.916 5.916 16 Si 0.958 3.042 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.065 3.935 21 C -0.106 4.106 22 C -0.108 4.108 23 C 0.040 3.960 24 F -0.145 7.145 25 H 0.125 0.875 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.138 0.862 29 H 0.099 0.901 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.377 0.623 36 H 0.269 0.731 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.156 0.844 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.381 -9.520 -7.741 15.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.245 6.245 3 C 0.037 3.963 4 C -0.196 4.196 5 C -0.045 4.045 6 C -0.039 4.039 7 N -0.244 5.244 8 C -0.070 4.070 9 C -0.165 4.165 10 C 0.181 3.819 11 O -0.408 6.408 12 C -0.597 4.597 13 H 0.076 0.924 14 C -0.170 4.170 15 N -0.556 5.556 16 Si 0.784 3.216 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.062 4.062 21 C -0.125 4.125 22 C -0.126 4.126 23 C 0.020 3.980 24 F -0.124 7.124 25 H 0.143 0.857 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.156 0.844 29 H 0.118 0.882 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.228 0.772 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.174 0.826 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 10.271 -9.768 -7.858 16.206 hybrid contribution -1.938 0.510 0.801 2.158 sum 8.333 -9.257 -7.057 14.315 Atomic orbital electron populations 1.23364 0.76165 1.05818 1.02183 1.86078 1.23594 1.25897 1.88880 1.19100 0.91090 0.85793 1.00271 1.21136 1.00567 0.90980 1.06891 1.19709 0.94573 0.93461 0.96736 1.21282 0.97953 0.94904 0.89809 1.63726 1.43575 1.01965 1.15140 1.22932 0.92861 0.94917 0.96310 1.22985 0.98192 0.97546 0.97749 1.19951 0.84132 0.91921 0.85920 1.86056 1.19525 1.96506 1.38705 1.21895 1.05366 1.07426 1.24995 0.92374 1.25675 0.95421 0.98573 0.97365 1.69653 1.09858 1.34054 1.42058 0.85606 0.77367 0.79774 0.78840 1.19888 1.20780 1.19748 1.22723 0.93795 0.90289 0.99433 1.21060 0.92287 0.99117 1.00017 1.21253 1.02237 0.89113 1.00001 1.17304 0.86081 0.83428 1.11172 1.91446 1.76536 1.49808 1.94635 0.85727 0.92308 0.91617 0.84389 0.88243 0.94325 0.94292 0.91017 0.93238 0.92875 0.77217 0.92144 0.90132 0.93102 0.82609 0.81467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.46 16 2 O -0.33 -8.60 10.36 -93.07 -0.96 -9.56 16 3 C 0.08 2.24 6.69 22.53 0.15 2.39 16 4 C -0.18 -4.56 7.91 22.35 0.18 -4.38 16 5 C -0.04 -1.13 5.09 -19.87 -0.10 -1.23 16 6 C 0.09 2.53 4.72 85.56 0.40 2.93 16 7 N -0.52 -18.33 5.15 -890.11 -4.59 -22.92 16 8 C 0.06 2.13 5.60 86.77 0.49 2.62 16 9 C -0.13 -5.70 5.67 31.97 0.18 -5.52 16 10 C 0.22 10.65 0.85 -10.36 -0.01 10.64 16 11 O -0.60 -30.43 13.08 -148.98 -1.95 -32.38 16 12 C -0.56 -29.41 8.22 25.60 0.21 -29.20 16 13 H 0.06 3.02 7.53 -2.92 -0.02 3.00 16 14 C 0.03 1.54 5.28 84.65 0.45 1.99 16 15 N -0.92 -48.31 10.69 21.45 0.23 -48.08 16 16 Si 0.96 41.52 29.54 68.60 2.03 43.54 16 17 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 18 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 20 C 0.07 2.66 6.21 86.65 0.54 3.20 16 21 C -0.11 -2.32 9.69 22.28 0.22 -2.11 16 22 C -0.11 -2.28 10.02 22.30 0.22 -2.05 16 23 C 0.04 1.05 7.31 22.46 0.16 1.21 16 24 F -0.15 -4.04 17.11 44.97 0.77 -3.27 16 25 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 1.08 7.66 -2.39 -0.02 1.06 16 27 H 0.07 1.07 7.66 -2.39 -0.02 1.06 16 28 H 0.14 3.40 5.72 -2.91 -0.02 3.38 16 29 H 0.10 2.49 7.98 -2.39 -0.02 2.47 16 30 H 0.04 1.18 7.79 -2.38 -0.02 1.16 16 31 H 0.04 1.42 6.99 -2.39 -0.02 1.40 16 32 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.05 2.34 8.05 -2.39 -0.02 2.32 16 34 H 0.05 2.57 7.76 -2.38 -0.02 2.55 16 35 H 0.38 19.92 6.98 -74.06 -0.52 19.40 16 36 H 0.27 13.59 8.31 -92.71 -0.77 12.81 16 37 H 0.08 3.29 7.63 -2.39 -0.02 3.27 16 38 H 0.05 2.02 7.47 -2.39 -0.02 2.00 16 39 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 40 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -58.91 330.29 0.27 -58.64 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.54 Total: 32.08 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: 4.20 Total: -18.07 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: -4.36 Total: -70.99 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -2.91 Total: -41.94 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.77 Total: -3.27 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Total: -58.91 0.27 -58.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326614428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.882 kcal (2) G-P(sol) polarization free energy of solvation -58.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds