Wall clock time and date at job start Tue Mar 31 2020 06:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35957 * 117.00062 * 2 1 4 4 C 1.38661 * 120.05924 * 0.28202 * 3 2 1 5 5 C 1.38186 * 119.96889 * 180.22668 * 4 3 2 6 6 C 1.50696 * 119.95509 * 179.76947 * 5 4 3 7 7 N 1.46900 * 109.47010 * 269.72857 * 6 5 4 8 8 C 1.47906 * 111.00463 * 69.87265 * 7 6 5 9 9 C 1.53996 * 107.06117 * 214.15679 * 8 7 6 10 10 C 1.54591 * 105.13656 * 1.22236 * 9 8 7 11 11 O 1.42897 * 110.72580 * 263.42033 * 10 9 8 12 12 C 1.50705 * 110.72181 * 140.31766 * 10 9 8 13 13 H 1.08006 * 119.99788 * 241.44836 * 12 10 9 14 14 C 1.37876 * 120.00126 * 61.45398 * 12 10 9 15 15 N 1.31516 * 119.99773 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00069 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47288 * 89.99644 * 16 14 12 18 18 H 1.48504 * 109.47070 * 209.99844 * 16 14 12 19 19 H 1.48501 * 109.47173 * 329.99601 * 16 14 12 20 20 C 1.48534 * 111.00336 * 312.47554 * 7 6 5 21 21 C 1.38263 * 120.09072 * 359.49861 * 5 4 3 22 22 C 1.38251 * 120.12898 * 0.24710 * 21 5 4 23 23 C 1.38330 * 120.03045 * 0.02562 * 22 21 5 24 24 F 1.35094 * 120.05057 * 179.97438 * 23 22 21 25 25 H 1.09005 * 109.47030 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46983 * 299.98868 * 1 2 3 27 27 H 1.08997 * 109.47790 * 59.99250 * 1 2 3 28 28 H 1.08004 * 120.01984 * 359.97438 * 4 3 2 29 29 H 1.08993 * 109.47221 * 149.72866 * 6 5 4 30 30 H 1.08998 * 109.46962 * 29.72318 * 6 5 4 31 31 H 1.09003 * 109.91125 * 333.50977 * 8 7 6 32 32 H 1.08999 * 109.91852 * 94.80110 * 8 7 6 33 33 H 1.08993 * 110.30544 * 120.13627 * 9 8 7 34 34 H 1.08995 * 110.30651 * 242.21227 * 9 8 7 35 35 H 0.96704 * 114.00375 * 298.54612 * 11 10 9 36 36 H 0.97002 * 119.99762 * 180.02562 * 15 14 12 37 37 H 1.09004 * 110.66939 * 278.16097 * 20 7 6 38 38 H 1.09002 * 110.66619 * 41.28493 * 20 7 6 39 39 H 1.08000 * 119.93490 * 180.23135 * 21 5 4 40 40 H 1.08007 * 119.98841 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 0.0059 5 6 1.9215 3.6053 0.0012 6 6 1.1018 4.8698 0.0023 7 7 0.8352 5.2818 -1.3823 8 6 -0.1052 4.3495 -2.0411 9 6 0.3048 4.2665 -3.5232 10 6 1.5459 5.1795 -3.6504 11 8 1.1730 6.4776 -4.1171 12 6 2.5716 4.5606 -4.5647 13 1 3.5522 4.3119 -4.1864 14 6 2.2584 4.3119 -5.8842 15 7 1.0642 4.6143 -6.3448 16 14 3.5296 3.5441 -7.0173 17 1 3.4075 2.0650 -6.9681 18 1 3.3014 4.0137 -8.4075 19 1 4.8905 3.9434 -6.5771 20 6 2.0770 5.2470 -2.1965 21 6 3.3023 3.6777 0.0010 22 6 4.0579 2.5200 0.0004 23 6 3.4333 1.2857 -0.0005 24 9 4.1713 0.1541 -0.0016 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 0.2136 2.3200 0.0101 29 1 1.6510 5.6583 0.5167 30 1 0.1574 4.6901 0.5161 31 1 -0.0347 3.3641 -1.5806 32 1 -1.1236 4.7291 -1.9583 33 1 0.5611 3.2407 -3.7879 34 1 -0.5015 4.6308 -4.1597 35 1 0.7643 6.4782 -4.9935 36 1 0.8437 4.4390 -7.2730 37 1 2.6635 6.1528 -2.0428 38 1 2.6668 4.3611 -1.9609 39 1 3.7915 4.6406 0.0011 40 1 5.1363 2.5791 -0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326614429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:15 Heat of formation + Delta-G solvation = -93.727547 kcal Electronic energy + Delta-G solvation = -24874.054935 eV Core-core repulsion = 21182.918287 eV Total energy + Delta-G solvation = -3691.136649 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.66000 -40.31299 -38.71750 -37.12665 -34.77198 -32.09898 -31.55816 -30.42456 -29.10005 -28.08678 -27.29193 -25.57472 -23.91711 -22.51249 -21.64495 -20.07910 -19.47469 -17.95111 -17.11801 -17.00291 -16.72127 -16.13403 -15.25588 -15.01525 -14.98283 -14.65986 -14.54514 -14.48075 -14.19631 -13.65334 -13.44998 -12.81621 -12.74639 -12.32767 -12.07749 -11.88979 -11.76421 -11.46258 -11.30538 -11.15853 -11.02276 -10.91660 -10.79793 -10.65316 -10.44581 -10.33684 -9.80650 -9.14314 -8.80410 -8.57621 -8.11764 -8.04309 -7.77107 -6.19450 -4.27042 1.16028 1.31885 3.11275 3.23165 3.30386 3.34348 3.59783 4.29487 4.31337 4.60877 4.72154 4.85501 5.00658 5.07326 5.09078 5.13478 5.22778 5.38613 5.44819 5.56636 5.70622 5.84560 5.94066 6.01204 6.05070 6.05737 6.17728 6.24867 6.46808 6.52652 6.61307 6.66572 6.88573 7.04480 7.26849 7.38157 7.51189 7.53370 7.64349 7.83381 8.20103 8.75329 9.41732 9.56431 10.87613 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.014008 B = 0.005887 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.406926 B = 4754.705666 C = 5446.846214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.094 3.906 4 C -0.170 4.170 5 C -0.081 4.081 6 C 0.080 3.920 7 N -0.500 5.500 8 C 0.026 3.974 9 C -0.127 4.127 10 C 0.257 3.743 11 O -0.581 6.581 12 C -0.535 4.535 13 H 0.060 0.940 14 C 0.071 3.929 15 N -0.895 5.895 16 Si 0.896 3.104 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.042 3.958 21 C -0.111 4.111 22 C -0.115 4.115 23 C 0.064 3.936 24 F -0.137 7.137 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.136 0.864 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.377 0.623 36 H 0.266 0.734 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.135 0.865 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.343 -5.126 13.234 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.048 3.952 4 C -0.189 4.189 5 C -0.083 4.083 6 C -0.048 4.048 7 N -0.222 5.222 8 C -0.101 4.101 9 C -0.166 4.166 10 C 0.217 3.783 11 O -0.389 6.389 12 C -0.573 4.573 13 H 0.078 0.922 14 C -0.131 4.131 15 N -0.535 5.535 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.085 4.085 21 C -0.130 4.130 22 C -0.134 4.134 23 C 0.044 3.956 24 F -0.116 7.116 25 H 0.119 0.881 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.154 0.846 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.226 0.774 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.153 0.847 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.346 -4.634 13.677 14.503 hybrid contribution 0.578 -1.696 -1.369 2.255 sum -0.769 -6.330 12.308 13.862 Atomic orbital electron populations 1.23105 0.78055 1.04066 1.01649 1.86105 1.21649 1.25922 1.88881 1.18954 0.90797 0.85497 0.99930 1.21051 0.99990 0.90987 1.06890 1.20575 0.94728 0.96051 0.96940 1.21464 0.98201 0.91682 0.93499 1.65193 1.11316 1.45667 1.00018 1.23058 0.96414 0.93614 0.97043 1.22899 1.00604 1.01408 0.91708 1.19318 0.89872 0.80673 0.88481 1.86137 1.83160 1.30834 1.38739 1.21595 0.99667 1.40919 0.95153 0.92225 1.24978 0.95393 0.94659 0.98043 1.69733 1.19613 1.48134 1.15971 0.86533 0.81891 0.79386 0.79874 1.20600 1.21017 1.19721 1.23459 0.90942 1.00415 0.93695 1.20873 0.93017 0.98182 1.00923 1.20975 1.00976 0.90171 1.01249 1.16942 0.85914 0.82961 1.09826 1.91470 1.76437 1.49227 1.94418 0.88096 0.92595 0.92186 0.84633 0.89731 0.90487 0.94690 0.91891 0.92312 0.91592 0.77413 0.92425 0.91071 0.92085 0.84687 0.84109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.57 10.36 -19.61 -0.20 -4.78 16 3 C 0.09 1.45 6.69 -39.18 -0.26 1.19 16 4 C -0.17 -2.42 7.18 -39.44 -0.28 -2.70 16 5 C -0.08 -1.17 3.95 -104.63 -0.41 -1.58 16 6 C 0.08 1.15 5.69 -4.98 -0.03 1.12 16 7 N -0.50 -9.30 5.54 -231.89 -1.28 -10.58 16 8 C 0.03 0.50 6.46 -2.75 -0.02 0.48 16 9 C -0.13 -2.93 5.26 -25.38 -0.13 -3.06 16 10 C 0.26 6.35 0.95 -89.91 -0.09 6.27 16 11 O -0.58 -15.27 13.10 -35.23 -0.46 -15.73 16 12 C -0.53 -14.38 8.14 -34.44 -0.28 -14.66 16 13 H 0.06 1.61 7.78 -52.48 -0.41 1.20 16 14 C 0.07 1.91 5.28 -17.82 -0.09 1.81 16 15 N -0.89 -24.00 11.00 55.43 0.61 -23.39 16 16 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 C 0.04 0.88 5.20 -1.90 -0.01 0.87 16 21 C -0.11 -1.56 7.48 -39.57 -0.30 -1.85 16 22 C -0.11 -1.61 10.02 -39.54 -0.40 -2.01 16 23 C 0.06 1.00 7.31 -39.30 -0.29 0.72 16 24 F -0.14 -2.25 17.11 2.25 0.04 -2.21 16 25 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.48 7.65 -51.93 -0.40 0.08 16 27 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 28 H 0.14 1.69 5.43 -52.48 -0.28 1.40 16 29 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 30 H 0.08 0.97 8.02 -51.93 -0.42 0.56 16 31 H 0.03 0.60 4.88 -51.93 -0.25 0.34 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 1.44 7.84 -51.93 -0.41 1.03 16 34 H 0.07 1.59 7.99 -51.93 -0.41 1.18 16 35 H 0.38 10.00 7.46 45.56 0.34 10.34 16 36 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 37 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.06 1.26 4.75 -51.93 -0.25 1.02 16 39 H 0.14 1.68 8.05 -52.49 -0.42 1.26 16 40 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 323.79 15.07 4.88 4.88 Total: -1.00 -29.54 323.79 -7.59 -37.13 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -4.56 Total: 10.90 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -1.60 Total: -12.15 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: -0.67 Total: -33.97 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.66 Total: -20.50 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.54 -7.59 -37.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326614429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.595 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds