Wall clock time and date at job start Tue Mar 31 2020 06:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35957 * 117.00062 * 2 1 4 4 C 1.38661 * 120.05924 * 0.28202 * 3 2 1 5 5 C 1.38186 * 119.96889 * 180.22668 * 4 3 2 6 6 C 1.50696 * 119.95509 * 179.76947 * 5 4 3 7 7 N 1.46900 * 109.47010 * 269.72857 * 6 5 4 8 8 C 1.47906 * 111.00463 * 69.87265 * 7 6 5 9 9 C 1.53996 * 107.06117 * 214.15679 * 8 7 6 10 10 C 1.54591 * 105.13656 * 1.22236 * 9 8 7 11 11 O 1.42897 * 110.72580 * 263.42033 * 10 9 8 12 12 C 1.50705 * 110.72181 * 140.31766 * 10 9 8 13 13 H 1.08006 * 119.99788 * 241.44836 * 12 10 9 14 14 C 1.37876 * 120.00126 * 61.45398 * 12 10 9 15 15 N 1.31516 * 119.99773 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00069 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47288 * 89.99644 * 16 14 12 18 18 H 1.48504 * 109.47070 * 209.99844 * 16 14 12 19 19 H 1.48501 * 109.47173 * 329.99601 * 16 14 12 20 20 C 1.48534 * 111.00336 * 312.47554 * 7 6 5 21 21 C 1.38263 * 120.09072 * 359.49861 * 5 4 3 22 22 C 1.38251 * 120.12898 * 0.24710 * 21 5 4 23 23 C 1.38330 * 120.03045 * 0.02562 * 22 21 5 24 24 F 1.35094 * 120.05057 * 179.97438 * 23 22 21 25 25 H 1.09005 * 109.47030 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46983 * 299.98868 * 1 2 3 27 27 H 1.08997 * 109.47790 * 59.99250 * 1 2 3 28 28 H 1.08004 * 120.01984 * 359.97438 * 4 3 2 29 29 H 1.08993 * 109.47221 * 149.72866 * 6 5 4 30 30 H 1.08998 * 109.46962 * 29.72318 * 6 5 4 31 31 H 1.09003 * 109.91125 * 333.50977 * 8 7 6 32 32 H 1.08999 * 109.91852 * 94.80110 * 8 7 6 33 33 H 1.08993 * 110.30544 * 120.13627 * 9 8 7 34 34 H 1.08995 * 110.30651 * 242.21227 * 9 8 7 35 35 H 0.96704 * 114.00375 * 298.54612 * 11 10 9 36 36 H 0.97002 * 119.99762 * 180.02562 * 15 14 12 37 37 H 1.09004 * 110.66939 * 278.16097 * 20 7 6 38 38 H 1.09002 * 110.66619 * 41.28493 * 20 7 6 39 39 H 1.08000 * 119.93490 * 180.23135 * 21 5 4 40 40 H 1.08007 * 119.98841 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 0.0059 5 6 1.9215 3.6053 0.0012 6 6 1.1018 4.8698 0.0023 7 7 0.8352 5.2818 -1.3823 8 6 -0.1052 4.3495 -2.0411 9 6 0.3048 4.2665 -3.5232 10 6 1.5459 5.1795 -3.6504 11 8 1.1730 6.4776 -4.1171 12 6 2.5716 4.5606 -4.5647 13 1 3.5522 4.3119 -4.1864 14 6 2.2584 4.3119 -5.8842 15 7 1.0642 4.6143 -6.3448 16 14 3.5296 3.5441 -7.0173 17 1 3.4075 2.0650 -6.9681 18 1 3.3014 4.0137 -8.4075 19 1 4.8905 3.9434 -6.5771 20 6 2.0770 5.2470 -2.1965 21 6 3.3023 3.6777 0.0010 22 6 4.0579 2.5200 0.0004 23 6 3.4333 1.2857 -0.0005 24 9 4.1713 0.1541 -0.0016 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 0.2136 2.3200 0.0101 29 1 1.6510 5.6583 0.5167 30 1 0.1574 4.6901 0.5161 31 1 -0.0347 3.3641 -1.5806 32 1 -1.1236 4.7291 -1.9583 33 1 0.5611 3.2407 -3.7879 34 1 -0.5015 4.6308 -4.1597 35 1 0.7643 6.4782 -4.9935 36 1 0.8437 4.4390 -7.2730 37 1 2.6635 6.1528 -2.0428 38 1 2.6668 4.3611 -1.9609 39 1 3.7915 4.6406 0.0011 40 1 5.1363 2.5791 -0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326614429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:15 Heat of formation + Delta-G solvation = -114.754070 kcal Electronic energy + Delta-G solvation = -24874.966714 eV Core-core repulsion = 21182.918287 eV Total energy + Delta-G solvation = -3692.048427 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.86414 -41.46914 -40.07447 -38.45382 -36.45123 -34.15318 -32.97029 -31.53259 -30.49266 -29.75849 -28.29266 -27.20491 -25.48029 -23.60614 -22.89406 -21.56310 -21.25245 -19.10147 -19.00646 -18.15832 -17.85564 -17.23447 -16.97440 -16.78906 -16.21215 -16.08510 -15.92921 -15.55403 -15.43236 -15.19996 -14.83736 -14.40729 -14.14604 -13.66945 -13.53514 -13.25338 -13.12822 -13.00256 -12.83562 -12.56655 -12.51718 -12.32632 -12.26091 -12.16252 -12.05941 -11.95578 -11.62016 -11.03893 -10.59455 -10.09100 -9.89499 -9.25297 -9.16885 -8.21712 -6.36055 0.03398 0.22509 1.36513 1.39351 1.48083 2.15990 2.36451 2.48702 3.03372 3.18087 3.28641 3.61993 3.75270 3.98694 4.03614 4.11001 4.18222 4.26307 4.31798 4.32665 4.44460 4.52664 4.61120 4.66295 4.78289 4.83014 4.93367 4.94421 4.98521 5.11567 5.15976 5.28030 5.40756 5.52538 5.59534 5.62117 5.78010 5.93351 6.19440 6.23685 6.30263 6.69856 7.35483 7.50008 8.83573 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.014008 B = 0.005887 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.406926 B = 4754.705666 C = 5446.846214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.084 3.916 4 C -0.171 4.171 5 C -0.087 4.087 6 C 0.081 3.919 7 N -0.507 5.507 8 C 0.035 3.965 9 C -0.119 4.119 10 C 0.237 3.763 11 O -0.589 6.589 12 C -0.558 4.558 13 H 0.051 0.949 14 C 0.032 3.968 15 N -0.910 5.910 16 Si 0.950 3.050 17 H -0.279 1.279 18 H -0.279 1.279 19 H -0.271 1.271 20 C 0.053 3.947 21 C -0.117 4.117 22 C -0.114 4.114 23 C 0.036 3.964 24 F -0.147 7.147 25 H 0.123 0.877 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.155 0.845 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.370 0.630 36 H 0.268 0.732 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.151 0.849 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.644 -5.218 14.427 15.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.038 3.962 4 C -0.191 4.191 5 C -0.089 4.089 6 C -0.046 4.046 7 N -0.228 5.228 8 C -0.093 4.093 9 C -0.158 4.158 10 C 0.197 3.803 11 O -0.397 6.397 12 C -0.596 4.596 13 H 0.069 0.931 14 C -0.169 4.169 15 N -0.550 5.550 16 Si 0.775 3.225 17 H -0.205 1.205 18 H -0.204 1.204 19 H -0.196 1.196 20 C -0.074 4.074 21 C -0.136 4.136 22 C -0.133 4.133 23 C 0.016 3.984 24 F -0.126 7.126 25 H 0.141 0.859 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.172 0.828 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.218 0.782 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.168 0.832 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.655 -4.728 14.888 15.708 hybrid contribution 0.645 -1.689 -1.725 2.498 sum -1.010 -6.416 13.164 14.679 Atomic orbital electron populations 1.23414 0.75922 1.05943 1.02419 1.86084 1.23942 1.25872 1.88810 1.19152 0.90938 0.86216 0.99929 1.21247 1.00897 0.90511 1.06411 1.20678 0.95011 0.96155 0.97041 1.21604 0.99857 0.92131 0.91052 1.65129 1.09869 1.46212 1.01621 1.22973 0.97126 0.95055 0.94126 1.22673 0.99249 0.99343 0.94533 1.19613 0.90340 0.80163 0.90190 1.86131 1.83163 1.32048 1.38320 1.21877 0.99967 1.41582 0.96182 0.93060 1.25617 0.96993 0.95065 0.99231 1.69812 1.20579 1.48366 1.16208 0.85690 0.79864 0.78517 0.78382 1.20472 1.20395 1.19618 1.23244 0.91912 1.00334 0.91900 1.21128 0.93154 0.98795 1.00526 1.21233 1.02136 0.89624 1.00310 1.17338 0.86525 0.83271 1.11259 1.91434 1.76690 1.49817 1.94652 0.85870 0.90645 0.92444 0.82806 0.87938 0.87979 0.92701 0.90384 0.94626 0.93630 0.78153 0.92308 0.91528 0.91749 0.83170 0.82198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.33 -9.41 10.36 -93.07 -0.96 -10.38 16 3 C 0.08 2.49 6.69 22.53 0.15 2.64 16 4 C -0.17 -4.50 7.18 22.36 0.16 -4.34 16 5 C -0.09 -2.30 3.95 -19.87 -0.08 -2.38 16 6 C 0.08 2.06 5.69 85.56 0.49 2.54 16 7 N -0.51 -17.61 5.54 -887.57 -4.91 -22.52 16 8 C 0.03 1.24 6.46 86.45 0.56 1.80 16 9 C -0.12 -5.47 5.26 31.47 0.17 -5.30 16 10 C 0.24 11.72 0.95 -10.34 -0.01 11.71 16 11 O -0.59 -31.21 13.10 -148.98 -1.95 -33.16 16 12 C -0.56 -30.20 8.14 25.60 0.21 -29.99 16 13 H 0.05 2.78 7.78 -2.91 -0.02 2.76 16 14 C 0.03 1.69 5.28 84.65 0.45 2.13 16 15 N -0.91 -49.25 11.00 21.45 0.24 -49.02 16 16 Si 0.95 42.97 29.54 68.60 2.03 45.00 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 C 0.05 2.19 5.20 86.65 0.45 2.64 16 21 C -0.12 -3.05 7.48 22.28 0.17 -2.88 16 22 C -0.11 -3.07 10.02 22.29 0.22 -2.85 16 23 C 0.04 1.11 7.31 22.45 0.16 1.28 16 24 F -0.15 -4.83 17.11 44.97 0.77 -4.06 16 25 H 0.12 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.08 1.08 7.65 -2.39 -0.02 1.06 16 27 H 0.06 1.08 7.67 -2.39 -0.02 1.06 16 28 H 0.15 3.35 5.43 -2.91 -0.02 3.33 16 29 H 0.10 2.28 8.08 -2.39 -0.02 2.26 16 30 H 0.10 2.12 8.02 -2.39 -0.02 2.11 16 31 H 0.05 1.73 4.88 -2.39 -0.01 1.72 16 32 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.03 1.75 7.84 -2.39 -0.02 1.73 16 34 H 0.04 2.23 7.99 -2.39 -0.02 2.21 16 35 H 0.37 20.06 7.46 -74.05 -0.55 19.51 16 36 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 37 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 38 H 0.06 2.59 4.75 -2.39 -0.01 2.58 16 39 H 0.15 3.38 8.05 -2.91 -0.02 3.36 16 40 H 0.16 3.50 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -63.28 323.79 -0.07 -63.36 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: 0.52 Total: 32.35 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 4.21 Total: -21.57 kcal Atomic # 7 Polarization: -66.86 SS G_CDS: -4.68 Total: -71.54 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -2.92 Total: -43.54 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.77 Total: -4.06 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -63.28 -0.07 -63.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326614429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.397 kcal (2) G-P(sol) polarization free energy of solvation -63.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds