Wall clock time and date at job start Tue Mar 31 2020 07:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42891 * 114.00223 * 2 1 4 4 H 1.09003 * 109.47474 * 30.00006 * 3 2 1 5 5 C 1.53001 * 109.47502 * 149.99724 * 3 2 1 6 6 N 1.46903 * 109.47069 * 300.00416 * 5 3 2 7 7 C 1.47957 * 111.00079 * 169.99783 * 6 5 3 8 8 C 1.53937 * 86.18208 * 222.41605 * 7 6 5 9 9 O 1.42896 * 113.73148 * 269.25755 * 8 7 6 10 10 C 1.50694 * 113.73443 * 138.07827 * 8 7 6 11 11 H 1.08000 * 120.00563 * 0.02562 * 10 8 7 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 8 7 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 C 1.47958 * 111.00224 * 70.63461 * 6 5 3 19 19 C 1.50695 * 109.47431 * 269.99936 * 3 2 1 20 20 C 1.38248 * 119.97388 * 324.72726 * 19 3 2 21 21 C 1.38195 * 120.02600 * 179.76837 * 20 19 3 22 22 C 1.38455 * 119.97536 * 0.50302 * 21 20 19 23 23 F 1.35101 * 120.02741 * 179.76988 * 22 21 20 24 24 C 1.38462 * 119.95083 * 359.74953 * 22 21 20 25 25 C 1.38194 * 119.97031 * 359.97438 * 24 22 21 26 26 H 1.08992 * 109.47137 * 299.99921 * 1 2 3 27 27 H 1.09002 * 109.46585 * 60.00312 * 1 2 3 28 28 H 1.09001 * 109.47027 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47366 * 180.02562 * 5 3 2 30 30 H 1.08999 * 109.46999 * 59.99572 * 5 3 2 31 31 H 1.08999 * 113.76060 * 108.09601 * 7 6 5 32 32 H 1.09001 * 113.85944 * 336.74419 * 7 6 5 33 33 H 0.96709 * 114.00030 * 178.09403 * 9 8 7 34 34 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 35 35 H 1.09003 * 113.76031 * 23.26533 * 18 6 5 36 36 H 1.08999 * 113.76380 * 251.90073 * 18 6 5 37 37 H 1.08000 * 119.98614 * 0.02562 * 20 19 3 38 38 H 1.08004 * 120.01478 * 180.25270 * 21 20 19 39 39 H 1.07995 * 120.01696 * 179.97438 * 24 22 21 40 40 H 1.08000 * 119.99115 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3451 1.9994 0.5138 5 6 3.3589 1.2632 0.7213 6 7 3.1597 0.8158 2.1063 7 6 4.4548 0.5333 2.7637 8 6 3.7697 -0.7165 3.3454 9 8 3.1498 -0.4948 4.6136 10 6 4.6363 -1.9491 3.3226 11 1 5.6382 -1.8977 2.9226 12 6 4.1502 -3.1428 3.8125 13 7 2.9304 -3.2054 4.3001 14 14 5.2242 -4.6709 3.7837 15 1 4.4743 -5.8140 4.3635 16 1 5.6005 -4.9851 2.3819 17 1 6.4518 -4.4283 4.5832 18 6 2.8002 -0.6186 2.1537 19 6 2.2147 1.7643 -1.4207 20 6 2.5651 0.8513 -2.3979 21 6 2.7482 1.2701 -3.7020 22 6 2.5906 2.6065 -4.0279 23 9 2.7738 3.0179 -5.3016 24 6 2.2446 3.5210 -3.0475 25 6 2.0566 3.0989 -1.7451 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.8021 2.2590 0.7217 30 1 4.0242 0.5692 0.2076 31 1 4.7354 1.2705 3.5160 32 1 5.2626 0.3075 2.0676 33 1 2.6933 -1.2697 4.9692 34 1 2.5883 -4.0453 4.6444 35 1 3.1228 -1.1814 1.2777 36 1 1.7589 -0.8019 2.4186 37 1 2.6919 -0.1905 -2.1427 38 1 3.0180 0.5560 -4.4660 39 1 2.1219 4.5637 -3.3004 40 1 1.7863 3.8118 -0.9802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473414931.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:39 Heat of formation + Delta-G solvation = -74.698169 kcal Electronic energy + Delta-G solvation = -23993.351309 eV Core-core repulsion = 20303.039836 eV Total energy + Delta-G solvation = -3690.311473 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.03244 -39.87368 -38.71221 -37.18383 -34.23308 -32.15458 -31.95383 -31.25559 -29.20575 -26.85618 -25.90717 -24.92016 -24.17496 -23.13630 -21.85748 -20.64076 -18.52384 -17.83728 -17.22449 -16.88379 -16.47348 -15.73365 -15.61592 -15.20867 -14.85802 -14.72650 -14.49371 -13.96744 -13.82718 -13.71931 -13.57997 -13.33024 -12.83636 -12.45876 -12.39130 -11.97701 -11.62402 -11.44304 -11.35470 -11.25747 -11.10096 -10.83806 -10.67201 -10.44894 -10.33266 -9.92926 -9.48054 -9.25126 -9.23378 -8.69867 -8.57138 -8.11092 -7.71723 -6.20445 -4.29418 0.97268 1.10418 3.24161 3.29199 3.31879 3.42653 3.92910 4.11303 4.29648 4.54525 4.62848 4.73663 4.98450 5.05969 5.16802 5.22630 5.31361 5.42530 5.53417 5.62761 5.77230 5.79803 5.86973 5.92103 5.97226 6.03835 6.07824 6.15578 6.21190 6.37875 6.44820 6.63000 6.74369 6.77247 7.23417 7.25386 7.39664 7.46504 7.82690 8.04418 8.09358 8.71051 9.39826 9.71777 10.85315 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022857 B = 0.003673 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.740394 B = 7621.417114 C = 7909.549130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.363 6.363 3 C 0.137 3.863 4 H 0.076 0.924 5 C 0.028 3.972 6 N -0.481 5.481 7 C 0.008 3.992 8 C 0.238 3.762 9 O -0.574 6.574 10 C -0.536 4.536 11 H 0.063 0.937 12 C 0.072 3.928 13 N -0.898 5.898 14 Si 0.901 3.099 15 H -0.285 1.285 16 H -0.276 1.276 17 H -0.275 1.275 18 C 0.014 3.986 19 C -0.116 4.116 20 C -0.064 4.064 21 C -0.156 4.156 22 C 0.092 3.908 23 F -0.144 7.144 24 C -0.157 4.157 25 C -0.083 4.083 26 H 0.044 0.956 27 H 0.033 0.967 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.388 0.612 34 H 0.270 0.730 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.140 0.860 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.917 9.260 -13.051 16.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.281 6.281 3 C 0.078 3.922 4 H 0.094 0.906 5 C -0.101 4.101 6 N -0.204 5.204 7 C -0.121 4.121 8 C 0.196 3.804 9 O -0.386 6.386 10 C -0.575 4.575 11 H 0.081 0.919 12 C -0.130 4.130 13 N -0.539 5.539 14 Si 0.729 3.271 15 H -0.211 1.211 16 H -0.201 1.201 17 H -0.200 1.200 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.082 4.082 21 C -0.175 4.175 22 C 0.073 3.927 23 F -0.123 7.123 24 C -0.176 4.176 25 C -0.101 4.101 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.243 0.757 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.139 10.065 -12.827 16.822 hybrid contribution 0.660 -1.600 -0.875 1.940 sum -3.479 8.465 -13.702 16.477 Atomic orbital electron populations 1.22743 0.81487 1.02658 0.99459 1.88043 1.19343 1.26237 1.94478 1.20937 0.96108 0.85724 0.89406 0.90637 1.22687 0.93935 1.01053 0.92419 1.68536 1.20029 1.21123 1.10735 1.24134 0.91462 0.99017 0.97473 1.19864 0.88770 0.89986 0.81763 1.86024 1.73916 1.42918 1.35723 1.21625 1.00833 0.93800 1.41217 0.91901 1.25023 0.94921 0.99073 0.93943 1.69342 1.15558 1.27508 1.41457 0.86506 0.80426 0.81717 0.78481 1.21059 1.20106 1.20042 1.24507 1.01155 0.85584 1.00212 1.20655 1.00227 0.93661 0.97133 1.20964 0.95443 1.00771 0.91018 1.21184 1.03988 0.94200 0.98133 1.17759 1.02574 0.93383 0.79012 1.91484 1.92984 1.91050 1.36739 1.21076 1.03803 0.99771 0.92914 1.20913 0.98255 0.95396 0.95538 0.93778 0.94830 0.89714 0.90531 0.93777 0.90859 0.91879 0.75713 0.91953 0.91876 0.91394 0.84259 0.84815 0.84855 0.84914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.81 101.05 1.09 1.53 16 2 O -0.36 -5.79 6.96 -35.23 -0.25 -6.03 16 3 C 0.14 1.98 2.57 -27.88 -0.07 1.91 16 4 H 0.08 1.06 7.70 -51.93 -0.40 0.66 16 5 C 0.03 0.47 4.68 -3.82 -0.02 0.45 16 6 N -0.48 -9.88 6.26 -238.24 -1.49 -11.37 16 7 C 0.01 0.17 7.36 -2.77 -0.02 0.15 16 8 C 0.24 6.04 1.44 -90.84 -0.13 5.91 16 9 O -0.57 -15.61 13.48 -35.23 -0.47 -16.08 16 10 C -0.54 -14.43 8.62 -34.44 -0.30 -14.73 16 11 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 12 C 0.07 1.91 5.40 -17.82 -0.10 1.82 16 13 N -0.90 -24.15 11.09 55.43 0.61 -23.54 16 14 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 15 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 C 0.01 0.33 5.36 -2.77 -0.01 0.32 16 19 C -0.12 -1.45 4.96 -104.62 -0.52 -1.96 16 20 C -0.06 -0.79 9.35 -39.59 -0.37 -1.16 16 21 C -0.16 -1.77 10.03 -39.52 -0.40 -2.16 16 22 C 0.09 1.06 7.30 -39.42 -0.29 0.77 16 23 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 24 C -0.16 -1.63 10.03 -39.52 -0.40 -2.03 16 25 C -0.08 -0.89 9.68 -39.59 -0.38 -1.27 16 26 H 0.04 0.57 8.08 -51.93 -0.42 0.15 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.04 0.77 7.69 -51.93 -0.40 0.37 16 31 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.06 1.30 7.75 -51.93 -0.40 0.90 16 33 H 0.39 10.72 6.46 45.56 0.29 11.02 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 35 H 0.06 1.50 7.31 -51.93 -0.38 1.12 16 36 H 0.07 1.66 8.08 -51.93 -0.42 1.24 16 37 H 0.14 1.77 7.63 -52.49 -0.40 1.37 16 38 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 337.06 15.07 5.08 5.08 Total: -1.00 -28.43 337.06 -8.44 -36.87 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -5.03 Total: 11.72 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -1.91 Total: -10.47 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: -0.88 Total: -34.91 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.72 Total: -22.12 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.43 -8.44 -36.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473414931.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.824 kcal (2) G-P(sol) polarization free energy of solvation -28.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds