Wall clock time and date at job start Tue Mar 31 2020 07:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42891 * 114.00223 * 2 1 4 4 H 1.09003 * 109.47474 * 30.00006 * 3 2 1 5 5 C 1.53001 * 109.47502 * 149.99724 * 3 2 1 6 6 N 1.46903 * 109.47069 * 300.00416 * 5 3 2 7 7 C 1.47957 * 111.00079 * 169.99783 * 6 5 3 8 8 C 1.53937 * 86.18208 * 222.41605 * 7 6 5 9 9 O 1.42896 * 113.73148 * 269.25755 * 8 7 6 10 10 C 1.50694 * 113.73443 * 138.07827 * 8 7 6 11 11 H 1.08000 * 120.00563 * 0.02562 * 10 8 7 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 8 7 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 C 1.47958 * 111.00224 * 70.63461 * 6 5 3 19 19 C 1.50695 * 109.47431 * 269.99936 * 3 2 1 20 20 C 1.38248 * 119.97388 * 324.72726 * 19 3 2 21 21 C 1.38195 * 120.02600 * 179.76837 * 20 19 3 22 22 C 1.38455 * 119.97536 * 0.50302 * 21 20 19 23 23 F 1.35101 * 120.02741 * 179.76988 * 22 21 20 24 24 C 1.38462 * 119.95083 * 359.74953 * 22 21 20 25 25 C 1.38194 * 119.97031 * 359.97438 * 24 22 21 26 26 H 1.08992 * 109.47137 * 299.99921 * 1 2 3 27 27 H 1.09002 * 109.46585 * 60.00312 * 1 2 3 28 28 H 1.09001 * 109.47027 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47366 * 180.02562 * 5 3 2 30 30 H 1.08999 * 109.46999 * 59.99572 * 5 3 2 31 31 H 1.08999 * 113.76060 * 108.09601 * 7 6 5 32 32 H 1.09001 * 113.85944 * 336.74419 * 7 6 5 33 33 H 0.96709 * 114.00030 * 178.09403 * 9 8 7 34 34 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 35 35 H 1.09003 * 113.76031 * 23.26533 * 18 6 5 36 36 H 1.08999 * 113.76380 * 251.90073 * 18 6 5 37 37 H 1.08000 * 119.98614 * 0.02562 * 20 19 3 38 38 H 1.08004 * 120.01478 * 180.25270 * 21 20 19 39 39 H 1.07995 * 120.01696 * 179.97438 * 24 22 21 40 40 H 1.08000 * 119.99115 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3451 1.9994 0.5138 5 6 3.3589 1.2632 0.7213 6 7 3.1597 0.8158 2.1063 7 6 4.4548 0.5333 2.7637 8 6 3.7697 -0.7165 3.3454 9 8 3.1498 -0.4948 4.6136 10 6 4.6363 -1.9491 3.3226 11 1 5.6382 -1.8977 2.9226 12 6 4.1502 -3.1428 3.8125 13 7 2.9304 -3.2054 4.3001 14 14 5.2242 -4.6709 3.7837 15 1 4.4743 -5.8140 4.3635 16 1 5.6005 -4.9851 2.3819 17 1 6.4518 -4.4283 4.5832 18 6 2.8002 -0.6186 2.1537 19 6 2.2147 1.7643 -1.4207 20 6 2.5651 0.8513 -2.3979 21 6 2.7482 1.2701 -3.7020 22 6 2.5906 2.6065 -4.0279 23 9 2.7738 3.0179 -5.3016 24 6 2.2446 3.5210 -3.0475 25 6 2.0566 3.0989 -1.7451 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.8021 2.2590 0.7217 30 1 4.0242 0.5692 0.2076 31 1 4.7354 1.2705 3.5160 32 1 5.2626 0.3075 2.0676 33 1 2.6933 -1.2697 4.9692 34 1 2.5883 -4.0453 4.6444 35 1 3.1228 -1.1814 1.2777 36 1 1.7589 -0.8019 2.4186 37 1 2.6919 -0.1905 -2.1427 38 1 3.0180 0.5560 -4.4660 39 1 2.1219 4.5637 -3.3004 40 1 1.7863 3.8118 -0.9802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473414931.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:38 Heat of formation + Delta-G solvation = -94.347362 kcal Electronic energy + Delta-G solvation = -23994.203362 eV Core-core repulsion = 20303.039836 eV Total energy + Delta-G solvation = -3691.163526 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.92292 -41.14059 -40.12431 -38.34507 -36.11325 -34.06781 -33.27454 -32.10832 -30.56034 -28.37447 -27.29584 -26.71286 -25.57980 -24.00033 -23.19813 -21.81179 -20.41226 -19.18745 -18.71392 -17.94617 -17.60500 -17.09505 -16.70533 -16.62525 -16.37165 -16.13166 -15.71530 -15.57799 -15.44824 -14.72944 -14.48646 -14.45270 -14.14389 -13.95189 -13.77068 -13.41753 -13.29559 -13.05722 -12.86111 -12.60910 -12.49738 -12.33116 -12.22470 -12.06008 -11.90127 -11.64103 -11.12696 -10.66053 -10.58499 -10.08778 -9.99138 -9.61729 -9.50906 -8.20749 -6.37852 0.07191 0.25833 1.43555 1.44537 1.52594 2.39220 2.53380 2.83841 2.99894 3.17019 3.26476 3.71172 3.78878 3.93562 4.01281 4.10195 4.21765 4.34158 4.36062 4.40923 4.48698 4.57649 4.60209 4.64223 4.81865 4.84239 4.88613 4.94532 4.97090 5.01014 5.12744 5.24971 5.31244 5.46785 5.49154 5.54620 5.80122 5.88715 6.03951 6.30792 6.37711 6.65975 7.34275 7.58605 8.83640 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022857 B = 0.003673 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.740394 B = 7621.417114 C = 7909.549130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.142 3.858 4 H 0.082 0.918 5 C 0.028 3.972 6 N -0.479 5.479 7 C 0.016 3.984 8 C 0.209 3.791 9 O -0.585 6.585 10 C -0.562 4.562 11 H 0.061 0.939 12 C 0.029 3.971 13 N -0.917 5.917 14 Si 0.964 3.036 15 H -0.280 1.280 16 H -0.271 1.271 17 H -0.272 1.272 18 C 0.037 3.963 19 C -0.123 4.123 20 C -0.074 4.074 21 C -0.158 4.158 22 C 0.082 3.918 23 F -0.147 7.147 24 C -0.151 4.151 25 C -0.078 4.078 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.382 0.618 34 H 0.273 0.727 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.129 0.871 38 H 0.146 0.854 39 H 0.158 0.842 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.687 10.230 -14.221 17.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C 0.084 3.916 4 H 0.100 0.900 5 C -0.101 4.101 6 N -0.202 5.202 7 C -0.113 4.113 8 C 0.168 3.832 9 O -0.397 6.397 10 C -0.600 4.600 11 H 0.079 0.921 12 C -0.171 4.171 13 N -0.558 5.558 14 Si 0.789 3.211 15 H -0.205 1.205 16 H -0.196 1.196 17 H -0.198 1.198 18 C -0.093 4.093 19 C -0.124 4.124 20 C -0.092 4.092 21 C -0.177 4.177 22 C 0.063 3.937 23 F -0.126 7.126 24 C -0.169 4.169 25 C -0.096 4.096 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.117 0.883 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.235 0.765 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.147 0.853 38 H 0.164 0.836 39 H 0.176 0.824 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.910 11.054 -14.007 18.267 hybrid contribution 0.572 -1.857 -0.538 2.016 sum -3.338 9.197 -14.546 17.530 Atomic orbital electron populations 1.22825 0.80225 1.03130 1.00216 1.87998 1.20838 1.27327 1.94706 1.20847 0.94790 0.85387 0.90596 0.90036 1.22783 0.95572 1.01703 0.90032 1.68423 1.19168 1.19125 1.13457 1.24061 0.92171 0.97433 0.97629 1.20280 0.89884 0.91402 0.81657 1.86007 1.74077 1.42674 1.36904 1.21909 1.01131 0.94990 1.41988 0.92094 1.25759 0.96091 1.01734 0.93491 1.69421 1.16640 1.28210 1.41561 0.85529 0.78754 0.78292 0.78560 1.20475 1.19622 1.19762 1.24082 0.99214 0.87279 0.98704 1.20488 1.01510 0.94575 0.95840 1.20914 0.96272 1.00418 0.91590 1.21293 1.03683 0.94703 0.98008 1.17950 1.02862 0.93690 0.79176 1.91479 1.93047 1.91051 1.37011 1.21343 1.02450 1.00810 0.92335 1.21122 0.97344 0.94859 0.96274 0.94049 0.92905 0.89520 0.88254 0.94655 0.90525 0.90793 0.76467 0.91731 0.92964 0.93341 0.85322 0.83601 0.82425 0.82696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.81 113.37 1.23 2.05 16 2 O -0.39 -12.34 6.96 -148.98 -1.04 -13.38 16 3 C 0.14 3.93 2.57 29.85 0.08 4.01 16 4 H 0.08 2.14 7.70 -2.39 -0.02 2.12 16 5 C 0.03 0.89 4.68 86.30 0.40 1.29 16 6 N -0.48 -19.41 6.26 -910.87 -5.70 -25.11 16 7 C 0.02 0.68 7.36 86.41 0.64 1.32 16 8 C 0.21 10.73 1.44 -10.89 -0.02 10.71 16 9 O -0.59 -32.42 13.48 -148.98 -2.01 -34.43 16 10 C -0.56 -30.51 8.62 25.60 0.22 -30.28 16 11 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 12 C 0.03 1.54 5.40 84.66 0.46 2.00 16 13 N -0.92 -49.90 11.09 21.45 0.24 -49.66 16 14 Si 0.96 42.02 29.54 68.60 2.03 44.04 16 15 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 C 0.04 1.71 5.36 86.41 0.46 2.18 16 19 C -0.12 -2.85 4.96 -19.86 -0.10 -2.95 16 20 C -0.07 -1.74 9.35 22.26 0.21 -1.54 16 21 C -0.16 -3.35 10.03 22.31 0.22 -3.13 16 22 C 0.08 1.72 7.30 22.37 0.16 1.88 16 23 F -0.15 -3.21 17.27 44.97 0.78 -2.43 16 24 C -0.15 -2.68 10.03 22.31 0.22 -2.46 16 25 C -0.08 -1.45 9.68 22.26 0.22 -1.23 16 26 H 0.04 1.06 8.08 -2.39 -0.02 1.04 16 27 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.04 1.20 7.69 -2.39 -0.02 1.19 16 31 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 32 H 0.07 3.01 7.75 -2.39 -0.02 2.99 16 33 H 0.38 21.67 6.46 -74.05 -0.48 21.19 16 34 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 35 H 0.05 2.53 7.31 -2.39 -0.02 2.51 16 36 H 0.05 2.43 8.08 -2.39 -0.02 2.41 16 37 H 0.13 3.27 7.63 -2.91 -0.02 3.25 16 38 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 39 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 40 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -60.32 337.06 -0.74 -61.06 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: 0.57 Total: 36.06 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 4.40 Total: -16.15 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -5.47 Total: -74.78 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -3.04 Total: -47.81 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.78 Total: -2.43 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -60.32 -0.74 -61.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473414931.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.288 kcal (2) G-P(sol) polarization free energy of solvation -60.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds