Wall clock time and date at job start Tue Mar 31 2020 07:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33628 * 125.81103 * 2 1 4 4 C 1.34214 * 110.92519 * 180.15976 * 3 2 1 5 5 C 1.50706 * 125.42662 * 179.87649 * 4 3 2 6 6 N 1.46902 * 109.46577 * 269.68767 * 5 4 3 7 7 C 1.46905 * 110.99800 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47234 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47173 * 300.00189 * 8 7 6 10 10 C 1.53001 * 109.46929 * 59.99989 * 8 7 6 11 11 C 1.52995 * 109.46860 * 179.97438 * 8 7 6 12 12 C 1.50711 * 109.47057 * 179.97438 * 11 8 7 13 13 H 1.07996 * 119.99446 * 0.02562 * 12 11 8 14 14 C 1.37872 * 119.99849 * 180.02562 * 12 11 8 15 15 N 1.31509 * 120.00564 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 119.99583 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46916 * 60.00032 * 16 14 12 18 18 H 1.48495 * 109.46745 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47010 * 299.99785 * 16 14 12 20 20 C 1.34159 * 109.14934 * 359.60727 * 4 3 2 21 21 C 1.36502 * 125.80696 * 179.73031 * 2 1 3 22 22 C 1.47233 * 127.20310 * 359.97438 * 21 2 1 23 23 O 1.21537 * 119.99503 * 0.02562 * 22 21 2 24 24 O 1.34772 * 119.99841 * 179.97438 * 22 21 2 25 25 H 1.09002 * 109.46981 * 270.26760 * 1 2 3 26 26 H 1.09000 * 109.47033 * 30.26908 * 1 2 3 27 27 H 1.08995 * 109.46943 * 150.26947 * 1 2 3 28 28 H 1.09000 * 109.47318 * 29.68275 * 5 4 3 29 29 H 1.09000 * 109.47161 * 149.68905 * 5 4 3 30 30 H 1.00898 * 110.99915 * 56.05080 * 6 5 4 31 31 H 1.09002 * 109.47091 * 300.00139 * 7 6 5 32 32 H 1.09001 * 109.46854 * 60.00166 * 7 6 5 33 33 H 1.09001 * 109.47309 * 59.99847 * 9 8 7 34 34 H 1.08992 * 109.47369 * 180.02562 * 9 8 7 35 35 H 1.09001 * 109.47106 * 300.00080 * 9 8 7 36 36 H 1.09002 * 109.47218 * 60.00100 * 10 8 7 37 37 H 1.09002 * 109.46952 * 179.97438 * 10 8 7 38 38 H 1.09001 * 109.47163 * 299.99914 * 10 8 7 39 39 H 1.09002 * 109.47344 * 299.99934 * 11 8 7 40 40 H 1.09004 * 109.47471 * 60.00183 * 11 8 7 41 41 H 0.96994 * 120.00350 * 180.02562 * 15 14 12 42 42 H 1.07991 * 127.03022 * 180.25511 * 20 4 3 43 43 H 0.96700 * 116.99314 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0837 0.0000 4 6 3.5860 0.7389 -0.0035 5 6 4.7457 1.7013 -0.0072 6 7 5.1233 2.0075 -1.3934 7 6 6.2531 2.9456 -1.4363 8 6 6.6163 3.2402 -2.8931 9 6 7.0077 1.9381 -3.5945 10 6 5.4114 3.8601 -3.6037 11 6 7.7924 4.2177 -2.9376 12 6 8.1507 4.5075 -4.3726 13 1 7.5947 4.0414 -5.1726 14 6 9.1881 5.3676 -4.6639 15 7 9.8654 5.9348 -3.6897 16 14 9.6316 5.7274 -6.4425 17 1 8.4622 6.3290 -7.1323 18 1 10.7732 6.6760 -6.4858 19 1 10.0115 4.4635 -7.1233 20 6 3.6857 -0.5990 0.0028 21 6 2.3056 -1.1070 0.0052 22 6 1.8754 -2.5151 0.0124 23 8 0.6912 -2.7886 0.0137 24 8 2.7947 -3.5005 0.0164 25 1 -0.3633 0.0048 1.0277 26 1 -0.3633 0.8876 -0.5180 27 1 -0.3633 -0.8924 -0.5096 28 1 4.4566 2.6206 0.5021 29 1 5.5933 1.2508 0.5093 30 1 4.3357 2.3666 -1.9118 31 1 5.9740 3.8734 -0.9370 32 1 7.1113 2.5041 -0.9296 33 1 6.1695 1.2420 -3.5627 34 1 7.2669 2.1480 -4.6321 35 1 7.8661 1.4965 -3.0882 36 1 5.1325 4.7878 -3.1040 37 1 5.6703 4.0704 -4.6414 38 1 4.5732 3.1640 -3.5719 39 1 7.5131 5.1454 -2.4380 40 1 8.6510 3.7766 -2.4312 41 1 10.5950 6.5402 -3.8947 42 1 4.5938 -1.1834 0.0059 43 1 2.4641 -4.4092 0.0214 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600852607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:11 Heat of formation + Delta-G solvation = -96.931661 kcal Electronic energy + Delta-G solvation = -23333.628682 eV Core-core repulsion = 19765.813397 eV Total energy + Delta-G solvation = -3567.815284 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.90264 -40.10231 -37.77522 -36.35980 -34.83719 -33.37627 -32.52218 -31.70949 -28.58768 -26.93117 -26.35670 -25.77110 -24.56457 -23.60741 -22.14024 -21.87844 -19.71529 -18.36502 -18.03651 -16.96579 -16.78810 -16.26036 -15.92607 -15.63139 -15.47480 -14.79600 -14.49223 -14.18034 -13.67916 -13.64421 -13.29606 -13.19870 -13.02938 -12.80741 -12.59379 -12.30837 -12.04911 -11.98723 -11.84859 -11.63630 -10.99321 -10.90937 -10.88090 -10.80075 -10.50723 -10.30513 -10.16566 -10.08372 -9.71245 -9.09387 -8.88762 -8.73397 -8.32429 -8.24118 -5.97128 -3.97379 0.86399 1.73306 2.35234 2.79943 2.87081 3.34374 3.39065 3.41332 4.11085 4.42420 4.46250 4.54995 4.87364 4.94684 5.09107 5.13094 5.24479 5.34672 5.38712 5.47353 5.62790 5.67808 5.72747 5.78895 5.94482 6.10284 6.18177 6.20004 6.27644 6.46404 6.63798 6.74819 6.80758 6.81514 7.09162 7.18111 7.23740 7.30746 7.51173 7.64694 7.68303 7.83072 8.02818 8.46959 9.07673 9.65539 11.14510 Molecular weight = 295.16amu Principal moments of inertia in cm(-1) A = 0.030766 B = 0.002555 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.864425 B =10954.695259 C =11126.602268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.095 3.905 3 O -0.168 6.168 4 C -0.005 4.005 5 C 0.137 3.863 6 N -0.683 5.683 7 C 0.069 3.931 8 C -0.058 4.058 9 C -0.117 4.117 10 C -0.130 4.130 11 C 0.034 3.966 12 C -0.508 4.508 13 H 0.059 0.941 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.888 3.112 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.277 1.277 20 C -0.144 4.144 21 C -0.242 4.242 22 C 0.562 3.438 23 O -0.524 6.524 24 O -0.507 6.507 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.047 0.953 29 H 0.105 0.895 30 H 0.343 0.657 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.055 0.945 35 H 0.040 0.960 36 H 0.041 0.959 37 H 0.065 0.935 38 H 0.033 0.967 39 H 0.013 0.987 40 H 0.016 0.984 41 H 0.259 0.741 42 H 0.164 0.836 43 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.339 -13.839 9.877 23.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.041 3.959 3 O -0.064 6.064 4 C -0.053 4.053 5 C 0.008 3.992 6 N -0.315 5.315 7 C -0.059 4.059 8 C -0.058 4.058 9 C -0.174 4.174 10 C -0.187 4.187 11 C -0.003 4.003 12 C -0.546 4.546 13 H 0.077 0.923 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.716 3.284 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.164 4.164 21 C -0.244 4.244 22 C 0.408 3.592 23 O -0.415 6.415 24 O -0.318 6.318 25 H 0.110 0.890 26 H 0.102 0.898 27 H 0.126 0.874 28 H 0.065 0.935 29 H 0.123 0.877 30 H 0.162 0.838 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.031 0.969 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.181 0.819 43 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -16.025 -13.627 9.847 23.226 hybrid contribution -0.112 0.346 -0.677 0.768 sum -16.137 -13.281 9.170 22.822 Atomic orbital electron populations 1.20677 0.83593 1.05408 1.04580 1.22778 0.93969 0.83018 0.96115 1.83750 1.17160 1.34550 1.70959 1.22319 0.81727 0.95118 1.06185 1.20431 0.90907 0.95229 0.92605 1.60682 1.11262 1.49422 1.10173 1.22177 0.92291 0.92377 0.99061 1.20636 0.97193 0.96919 0.91087 1.21606 0.99443 0.95787 1.00573 1.21783 0.96300 0.98558 1.02096 1.19123 0.91216 0.92843 0.97155 1.21195 1.15207 1.25884 0.92342 0.92336 1.25007 0.96492 0.96236 0.96805 1.69947 1.21731 1.30808 1.31283 0.86725 0.77908 0.78115 0.85654 1.20365 1.21439 1.20291 1.22594 0.96302 0.93142 1.04362 1.20073 0.94403 0.90281 1.19666 1.19627 0.82838 0.85231 0.71455 1.90867 1.18298 1.84523 1.47833 1.84604 1.41900 1.19579 1.85763 0.89030 0.89791 0.87430 0.93457 0.87698 0.83752 0.95413 0.91110 0.93878 0.92640 0.94081 0.94034 0.91615 0.94853 0.96870 0.96600 0.93088 0.81854 0.72850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 9.89 36.01 0.36 -0.32 16 2 C 0.09 1.03 7.38 -34.93 -0.26 0.77 16 3 O -0.17 -1.98 10.52 7.72 0.08 -1.90 16 4 C -0.01 -0.06 6.79 -35.74 -0.24 -0.31 16 5 C 0.14 1.56 6.20 -4.97 -0.03 1.53 16 6 N -0.68 -9.38 5.70 -115.05 -0.66 -10.04 16 7 C 0.07 1.11 4.65 -3.82 -0.02 1.10 16 8 C -0.06 -1.12 0.60 -154.51 -0.09 -1.21 16 9 C -0.12 -2.21 8.06 37.16 0.30 -1.91 16 10 C -0.13 -2.37 7.89 37.16 0.29 -2.07 16 11 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 12 C -0.51 -13.72 7.65 -34.44 -0.26 -13.98 16 13 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 14 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 16 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.14 -1.66 10.93 -37.44 -0.41 -2.07 16 21 C -0.24 -2.80 6.32 -103.29 -0.65 -3.45 16 22 C 0.56 6.19 8.33 34.39 0.29 6.47 16 23 O -0.52 -6.46 15.64 -19.29 -0.30 -6.76 16 24 O -0.51 -4.32 13.34 -40.69 -0.54 -4.86 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.11 0.90 6.49 -51.93 -0.34 0.57 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.34 4.73 6.76 -39.29 -0.27 4.47 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.04 0.74 7.60 -51.93 -0.39 0.34 16 34 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 38 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 42 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.41 1.48 9.11 45.56 0.42 1.90 16 LS Contribution 356.77 15.07 5.38 5.38 Total: -1.00 -31.83 356.77 -6.96 -38.79 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.69 Total: 2.09 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -0.94 Total: -13.27 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.08 Total: -35.90 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.76 Total: -13.52 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.83 -6.96 -38.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600852607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.139 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds