Wall clock time and date at job start Tue Mar 31 2020 07:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.71307 * 2 1 4 4 C 1.52995 * 109.72145 * 239.34306 * 2 1 3 5 5 N 1.45651 * 110.76987 * 287.05381 * 4 2 1 6 6 C 1.46500 * 117.70206 * 158.37682 * 5 4 2 7 7 C 1.33373 * 124.59087 * 338.09536 * 5 4 2 8 8 O 1.21281 * 118.48745 * 184.29899 * 7 5 4 9 9 C 1.50439 * 123.02451 * 4.32174 * 7 5 4 10 10 N 1.47051 * 108.88951 * 347.29358 * 9 7 5 11 11 C 1.34779 * 121.35320 * 222.71777 * 10 9 7 12 12 O 1.21583 * 119.99934 * 174.15267 * 11 10 9 13 13 N 1.34782 * 119.99725 * 354.14478 * 11 10 9 14 14 C 1.46500 * 119.99479 * 186.23339 * 13 11 10 15 15 C 1.52997 * 109.46648 * 183.90730 * 14 13 11 16 16 C 1.50703 * 115.55358 * 305.96431 * 15 14 13 17 17 H 1.08004 * 119.99409 * 144.07711 * 16 15 14 18 18 C 1.37868 * 120.00151 * 324.08109 * 16 15 14 19 19 N 1.31522 * 120.00033 * 351.53159 * 18 16 15 20 20 Si 1.86796 * 120.00172 * 171.53305 * 18 16 15 21 21 H 1.48504 * 109.47222 * 90.00158 * 20 18 16 22 22 H 1.48498 * 109.47260 * 210.00041 * 20 18 16 23 23 H 1.48499 * 109.47190 * 330.00031 * 20 18 16 24 24 C 1.53008 * 117.49867 * 160.29396 * 15 14 13 25 25 C 1.52999 * 117.49769 * 91.63989 * 15 14 13 26 26 H 1.09003 * 109.47253 * 299.38769 * 1 2 3 27 27 H 1.08998 * 109.47482 * 59.38941 * 1 2 3 28 28 H 1.09000 * 109.47021 * 179.38894 * 1 2 3 29 29 H 1.08995 * 109.21983 * 166.71864 * 4 2 1 30 30 H 1.09002 * 109.21179 * 47.38283 * 4 2 1 31 31 H 1.09000 * 109.47217 * 179.73191 * 6 5 4 32 32 H 1.08999 * 109.47237 * 299.74098 * 6 5 4 33 33 H 1.09008 * 109.46872 * 59.73811 * 6 5 4 34 34 H 1.08999 * 109.56637 * 107.11331 * 9 7 5 35 35 H 1.08995 * 109.57264 * 227.34971 * 9 7 5 36 36 H 0.96998 * 120.00360 * 6.23643 * 13 11 10 37 37 H 1.08992 * 109.47727 * 303.90978 * 14 13 11 38 38 H 1.09005 * 109.47277 * 63.91328 * 14 13 11 39 39 H 0.96996 * 119.99718 * 185.03324 * 19 18 16 40 40 H 1.08998 * 117.49580 * 0.02562 * 24 15 14 41 41 H 1.08997 * 117.49844 * 145.02059 * 24 15 14 42 42 H 1.09004 * 117.49986 * 214.97713 * 25 15 14 43 43 H 1.08999 * 117.49693 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8977 1.0261 0.0000 4 6 2.0463 -0.7344 -1.2389 5 7 1.8446 -2.1710 -1.1092 6 6 1.8186 -2.9687 -2.3377 7 6 1.6872 -2.8119 0.0498 8 8 1.6057 -4.0219 0.0352 9 6 1.6057 -2.1031 1.3742 10 7 2.0269 -0.7059 1.1931 11 6 2.8347 -0.0960 2.0831 12 8 3.2537 1.0227 1.8568 13 7 3.1778 -0.7262 3.2240 14 6 3.9416 -0.0152 4.2522 15 6 4.2812 -0.9777 5.3920 16 6 3.1092 -1.7037 6.0007 17 1 3.2211 -2.7245 6.3354 18 6 1.8944 -1.0649 6.1303 19 7 1.7984 0.2227 5.8799 20 14 0.3846 -2.0280 6.6617 21 1 0.2760 -2.0008 8.1425 22 1 -0.8291 -1.4147 6.0650 23 1 0.5067 -3.4341 6.2001 24 6 5.4342 -0.5932 6.3215 25 6 5.6119 -1.7282 5.3100 26 1 -0.3634 0.5043 0.8954 27 1 -0.3634 0.5233 -0.8844 28 1 -0.3633 -1.0276 -0.0110 29 1 3.1103 -0.5308 -1.3593 30 1 1.5112 -0.3748 -2.1179 31 1 1.6658 -4.0182 -2.0863 32 1 1.0047 -2.6258 -2.9765 33 1 2.7663 -2.8556 -2.8645 34 1 0.5794 -2.1304 1.7403 35 1 2.2625 -2.5941 2.0922 36 1 2.9190 -1.6504 3.3643 37 1 4.8628 0.3726 3.8175 38 1 3.3467 0.8117 4.6401 39 1 0.9622 0.6871 6.0409 40 1 5.9504 0.3456 6.1212 41 1 5.3451 -0.8657 7.3731 42 1 5.6399 -2.7470 5.6966 43 1 6.2452 -1.5366 4.4438 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797560607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:56 Heat of formation + Delta-G solvation = -18.022238 kcal Electronic energy + Delta-G solvation = -25312.123388 eV Core-core repulsion = 21780.022624 eV Total energy + Delta-G solvation = -3532.100764 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.87793 -39.07160 -37.10842 -36.38609 -34.77103 -33.28914 -32.22445 -31.32582 -28.58493 -27.42560 -26.00550 -25.37964 -25.17354 -22.19388 -21.22592 -20.18501 -19.34535 -18.08153 -17.80924 -17.29351 -16.34570 -16.21190 -15.86346 -15.36223 -14.91435 -14.67856 -14.24168 -14.12265 -13.66529 -13.37447 -13.30248 -13.06975 -12.91237 -12.54132 -12.36714 -12.13874 -12.06326 -11.74797 -11.59656 -11.42992 -11.11030 -11.07756 -10.80525 -10.52548 -10.29619 -10.25548 -9.69757 -9.33862 -9.12520 -8.89793 -8.84378 -8.54468 -8.25694 -7.79811 -6.07825 -4.19982 2.50196 2.69718 3.09024 3.19436 3.28640 3.31454 3.80650 4.27206 4.34702 4.43247 4.67781 4.92184 4.97534 5.00148 5.19519 5.26031 5.26800 5.31120 5.45510 5.50264 5.55891 5.65840 5.70427 5.86942 6.01484 6.09605 6.17464 6.30485 6.53815 6.54953 6.62879 6.71602 6.88651 7.02840 7.26430 7.27424 7.35579 7.56869 7.61208 7.91681 8.01496 8.30803 8.66273 8.82508 9.26880 9.41571 10.87599 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.015865 B = 0.005351 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.503820 B = 5231.738794 C = 5603.803509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.121 0.879 4 C 0.106 3.894 5 N -0.602 5.602 6 C 0.069 3.931 7 C 0.514 3.486 8 O -0.549 6.549 9 C 0.102 3.898 10 N -0.637 5.637 11 C 0.709 3.291 12 O -0.600 6.600 13 N -0.704 5.704 14 C 0.178 3.822 15 C 0.036 3.964 16 C -0.499 4.499 17 H 0.062 0.938 18 C 0.076 3.924 19 N -0.867 5.867 20 Si 0.887 3.113 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.271 1.271 24 C -0.194 4.194 25 C -0.212 4.212 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.396 0.604 37 H 0.025 0.975 38 H 0.108 0.892 39 H 0.263 0.737 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.556 -1.390 -14.208 14.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.138 0.862 4 C -0.018 4.018 5 N -0.336 5.336 6 C -0.074 4.074 7 C 0.302 3.698 8 O -0.426 6.426 9 C -0.024 4.024 10 N -0.378 5.378 11 C 0.411 3.589 12 O -0.479 6.479 13 N -0.356 5.356 14 C 0.055 3.945 15 C 0.036 3.964 16 C -0.536 4.536 17 H 0.080 0.920 18 C -0.128 4.128 19 N -0.502 5.502 20 Si 0.714 3.286 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.195 1.195 24 C -0.232 4.232 25 C -0.249 4.249 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.135 0.865 36 H 0.232 0.768 37 H 0.044 0.956 38 H 0.126 0.874 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.424 -1.017 -14.345 14.584 hybrid contribution -0.913 -0.893 0.489 1.368 sum -3.338 -1.910 -13.856 14.380 Atomic orbital electron populations 1.22138 0.94518 1.02323 1.03016 1.21293 0.94213 0.98166 0.82533 0.86167 1.21870 1.01806 0.79142 0.99016 1.47066 1.71491 1.08254 1.06739 1.21790 1.01302 0.98496 0.85823 1.20386 0.75619 0.87790 0.86048 1.90722 1.51021 1.13901 1.86988 1.21681 1.03772 0.82273 0.94693 1.47398 1.52855 1.11860 1.25698 1.15783 0.78880 0.84067 0.80172 1.90835 1.59571 1.19324 1.78213 1.45130 1.58155 1.16121 1.16177 1.20938 0.92950 0.95936 0.84648 1.19204 0.87268 0.95648 0.94320 1.20490 0.92966 0.98899 1.41233 0.92030 1.24962 0.98594 0.94823 0.94452 1.69845 1.26533 1.07703 1.46160 0.86657 0.82489 0.80411 0.78998 1.20554 1.21085 1.19542 1.22909 1.07111 0.96990 0.96239 1.22959 1.04587 0.96264 1.01097 0.91307 0.91205 0.92654 0.91095 0.89615 0.89041 0.92192 0.92262 0.88111 0.86519 0.76836 0.95638 0.87395 0.92682 0.91479 0.90191 0.90622 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.03 37.16 0.34 -1.39 16 2 C 0.14 1.79 3.26 -67.52 -0.22 1.57 16 3 H 0.12 1.63 7.08 -51.93 -0.37 1.26 16 4 C 0.11 1.08 5.94 -4.50 -0.03 1.05 16 5 N -0.60 -7.15 3.10 -182.77 -0.57 -7.72 16 6 C 0.07 0.65 10.43 59.85 0.62 1.28 16 7 C 0.51 7.57 7.04 -11.74 -0.08 7.49 16 8 O -0.55 -9.60 15.96 5.56 0.09 -9.51 16 9 C 0.10 1.53 5.58 -5.02 -0.03 1.50 16 10 N -0.64 -10.16 2.76 -172.30 -0.48 -10.63 16 11 C 0.71 14.38 8.32 -86.91 -0.72 13.65 16 12 O -0.60 -13.85 15.83 5.29 0.08 -13.77 16 13 N -0.70 -14.90 5.23 -65.23 -0.34 -15.24 16 14 C 0.18 4.18 4.76 -4.04 -0.02 4.16 16 15 C 0.04 0.85 1.99 -155.66 -0.31 0.54 16 16 C -0.50 -12.48 8.28 -34.44 -0.29 -12.77 16 17 H 0.06 1.55 7.83 -52.48 -0.41 1.14 16 18 C 0.08 1.92 5.20 -17.82 -0.09 1.82 16 19 N -0.87 -22.68 10.70 55.43 0.59 -22.08 16 20 Si 0.89 19.73 29.55 -169.99 -5.02 14.71 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 C -0.19 -4.24 9.96 -26.69 -0.27 -4.50 16 25 C -0.21 -4.42 9.92 -26.70 -0.26 -4.69 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.61 6.82 -51.93 -0.35 0.25 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.61 8.01 -51.93 -0.42 0.19 16 31 H 0.09 1.03 6.59 -51.93 -0.34 0.69 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.10 1.41 7.84 -51.93 -0.41 1.01 16 35 H 0.12 1.82 6.08 -51.93 -0.32 1.51 16 36 H 0.40 8.10 5.64 -40.82 -0.23 7.87 16 37 H 0.03 0.59 8.06 -51.93 -0.42 0.17 16 38 H 0.11 2.86 6.00 -51.93 -0.31 2.55 16 39 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 41 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 42 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 345.71 15.07 5.21 5.21 Total: -1.00 -30.14 345.71 -8.30 -38.44 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -6.51 Total: 10.90 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: -1.36 Total: 9.71 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.79 Total: -55.68 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: 0.17 Total: -23.28 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.14 -8.30 -38.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797560607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.417 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds