Wall clock time and date at job start Tue Mar 31 2020 07:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47031 * 2 1 4 4 C 1.53006 * 109.46915 * 185.44772 * 3 2 1 5 5 C 1.53002 * 109.46649 * 65.00180 * 4 3 2 6 6 C 1.52998 * 109.47296 * 65.45390 * 3 2 1 7 7 N 1.46501 * 109.47202 * 184.39393 * 6 3 2 8 8 C 1.46499 * 120.00143 * 83.86381 * 7 6 3 9 9 C 1.50703 * 109.46742 * 273.77208 * 8 7 6 10 10 H 1.07996 * 120.00376 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99499 * 180.02562 * 9 8 7 12 12 N 1.31519 * 120.00599 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99930 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46773 * 90.00002 * 13 11 9 15 15 H 1.48493 * 109.47473 * 210.00209 * 13 11 9 16 16 H 1.48499 * 109.46967 * 330.00253 * 13 11 9 17 17 C 1.34776 * 119.99697 * 263.86139 * 7 6 3 18 18 O 1.21286 * 119.99916 * 4.00180 * 17 7 6 19 19 C 1.50693 * 120.00104 * 184.00017 * 17 7 6 20 20 H 1.08999 * 110.51125 * 38.08333 * 19 17 7 21 21 C 1.54981 * 110.57117 * 160.84310 * 19 17 7 22 22 C 1.55056 * 102.25839 * 155.53734 * 21 19 17 23 23 C 1.51840 * 104.52681 * 322.57016 * 22 21 19 24 24 O 1.20762 * 126.34121 * 203.71306 * 23 22 21 25 25 C 1.51442 * 107.32025 * 23.68646 * 23 22 21 26 26 H 1.09003 * 109.47344 * 293.90320 * 1 2 3 27 27 H 1.08997 * 109.47128 * 173.89933 * 1 2 3 28 28 H 1.09006 * 109.47016 * 53.90345 * 1 2 3 29 29 H 1.09001 * 109.46636 * 119.99791 * 2 1 3 30 30 H 1.08999 * 109.47531 * 239.99549 * 2 1 3 31 31 H 1.08998 * 109.47162 * 305.45190 * 3 2 1 32 32 H 1.08994 * 109.46647 * 184.99664 * 4 3 2 33 33 H 1.08996 * 109.47079 * 305.00117 * 4 3 2 34 34 H 1.08996 * 109.47432 * 60.00152 * 5 4 3 35 35 H 1.08998 * 109.46793 * 179.97438 * 5 4 3 36 36 H 1.09000 * 109.47476 * 299.99805 * 5 4 3 37 37 H 1.09009 * 109.47037 * 304.39247 * 6 3 2 38 38 H 1.08995 * 109.47275 * 64.38787 * 6 3 2 39 39 H 1.08994 * 109.47393 * 33.77240 * 8 7 6 40 40 H 1.08997 * 109.47073 * 153.77506 * 8 7 6 41 41 H 0.96992 * 120.00346 * 179.97438 * 12 11 9 42 42 H 1.09003 * 110.82999 * 273.85484 * 21 19 17 43 43 H 1.08996 * 110.83820 * 37.44137 * 21 19 17 44 44 H 1.08996 * 110.48478 * 203.75377 * 22 21 19 45 45 H 1.09005 * 110.41653 * 81.35007 * 22 21 19 46 46 H 1.09000 * 109.98716 * 240.29947 * 25 23 22 47 47 H 1.08994 * 110.01913 * 119.00586 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5639 1.4446 -0.1370 5 6 3.9539 0.8774 -1.5034 6 6 1.6450 2.1231 1.3121 7 7 2.0408 3.5330 1.2694 8 6 1.1671 4.5200 0.6300 9 6 1.4617 4.5694 -0.8471 10 1 2.2231 3.9293 -1.2677 11 6 0.7590 5.4318 -1.6616 12 7 -0.1679 6.2117 -1.1495 13 14 1.1245 5.4936 -3.4925 14 1 0.2617 4.5155 -4.2027 15 1 0.8506 6.8597 -4.0062 16 1 2.5515 5.1546 -3.7241 17 6 3.2086 3.9220 1.8183 18 8 3.9653 3.0958 2.2829 19 6 3.5743 5.3834 1.8546 20 1 2.6935 5.9926 2.0573 21 6 4.6725 5.6437 2.9168 22 6 5.3392 6.9407 2.3900 23 6 5.3419 6.7814 0.8800 24 8 6.0889 7.3275 0.1041 25 6 4.2347 5.8102 0.5272 26 1 -0.3634 0.4164 0.9395 27 1 -0.3633 -1.0218 -0.1092 28 1 -0.3633 0.6055 -0.8304 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.5991 1.9837 -0.8371 32 1 3.9352 2.4655 -0.0480 33 1 4.0003 0.8294 0.6498 34 1 3.5175 1.4927 -2.2902 35 1 5.0394 0.8794 -1.6012 36 1 3.5825 -0.1435 -1.5925 37 1 0.5657 2.0527 1.4474 38 1 2.1483 1.6294 2.1434 39 1 0.1258 4.2371 0.7836 40 1 1.3456 5.5016 1.0691 41 1 -0.6620 6.8187 -1.7224 42 1 4.2304 5.8041 3.9001 43 1 5.3897 4.8233 2.9421 44 1 6.3589 7.0252 2.7658 45 1 4.7542 7.8136 2.6797 46 1 4.6506 4.9390 0.0211 47 1 3.5007 6.2981 -0.1140 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584055152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:16 Heat of formation + Delta-G solvation = -107.048045 kcal Electronic energy + Delta-G solvation = -25932.774403 eV Core-core repulsion = 22500.353534 eV Total energy + Delta-G solvation = -3432.420869 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.04571 -38.82387 -36.90129 -35.26887 -34.56628 -32.50234 -31.37843 -29.39488 -28.05328 -27.20567 -26.47489 -24.01138 -23.03213 -22.21049 -21.28896 -19.32987 -19.16584 -18.16391 -16.84829 -16.57827 -15.84199 -15.62622 -14.95987 -14.62492 -14.39743 -14.26646 -14.11509 -13.70953 -13.65918 -13.14242 -13.03999 -12.79011 -12.50817 -12.26548 -12.14999 -11.63504 -11.60793 -11.47957 -11.38671 -11.20234 -11.16535 -10.98488 -10.90526 -10.82951 -10.70916 -10.49243 -10.31111 -10.21781 -9.87666 -9.77159 -9.53331 -9.33862 -8.94017 -8.56449 -7.71413 -6.22033 -4.27805 2.20133 3.20223 3.27161 3.29002 3.34983 3.87595 4.30124 4.44278 4.71794 5.06577 5.11337 5.17475 5.23217 5.28485 5.37343 5.49613 5.60052 5.61807 5.66222 5.68291 5.72411 5.83303 5.89909 6.01127 6.04200 6.07598 6.14862 6.19610 6.20925 6.23586 6.31508 6.43889 6.46214 6.54532 6.55668 6.59927 6.65971 6.75929 6.91896 7.07024 7.15509 7.51683 7.74014 7.74222 8.02132 8.31853 8.76748 8.97892 9.39727 10.84534 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.010340 B = 0.007435 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.175452 B = 3765.092317 C = 5140.836105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.105 4.105 4 C -0.106 4.106 5 C -0.152 4.152 6 C 0.127 3.873 7 N -0.591 5.591 8 C 0.235 3.765 9 C -0.529 4.529 10 H 0.066 0.934 11 C 0.067 3.933 12 N -0.891 5.891 13 Si 0.886 3.114 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.271 1.271 17 C 0.522 3.478 18 O -0.569 6.569 19 C -0.104 4.104 20 H 0.105 0.895 21 C -0.104 4.104 22 C -0.183 4.183 23 C 0.372 3.628 24 O -0.457 6.457 25 C -0.162 4.162 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.044 0.956 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.033 0.967 40 H 0.040 0.960 41 H 0.265 0.735 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.103 0.897 46 H 0.098 0.902 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.402 -4.979 5.681 8.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.125 4.125 4 C -0.144 4.144 5 C -0.209 4.209 6 C 0.004 3.996 7 N -0.320 5.320 8 C 0.115 3.885 9 C -0.568 4.568 10 H 0.084 0.916 11 C -0.136 4.136 12 N -0.529 5.529 13 Si 0.714 3.286 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.196 1.196 17 C 0.310 3.690 18 O -0.450 6.450 19 C -0.125 4.125 20 H 0.123 0.877 21 C -0.141 4.141 22 C -0.221 4.221 23 C 0.248 3.752 24 O -0.330 6.330 25 C -0.200 4.200 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.121 0.879 46 H 0.116 0.884 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.007 -4.970 5.455 8.397 hybrid contribution -0.217 0.148 -1.200 1.229 sum 3.790 -4.822 4.255 7.464 Atomic orbital electron populations 1.21817 0.96187 1.00724 1.02249 1.21566 0.95580 0.96970 1.01353 1.21677 0.95926 0.95025 0.99843 1.21422 0.95409 1.01525 0.96001 1.21833 1.00203 1.00520 0.98322 1.21372 0.99220 0.81754 0.97298 1.48209 1.20257 1.08767 1.54739 1.19488 0.89434 0.86884 0.92680 1.21485 1.20786 1.22228 0.92305 0.91630 1.24895 0.94851 0.95275 0.98582 1.69907 1.23203 1.23958 1.35835 0.86664 0.79031 0.77477 0.85436 1.20577 1.21128 1.19607 1.20144 0.81204 0.90116 0.77497 1.90595 1.50389 1.54279 1.49717 1.21961 0.99652 0.95001 0.95892 0.87657 1.22415 0.97557 0.96388 0.97781 1.22956 1.03076 1.00408 0.95636 1.25064 0.81193 0.77878 0.91015 1.90385 1.39767 1.44281 1.58607 1.22503 0.98536 1.00617 0.98359 0.92737 0.93603 0.92309 0.92683 0.92112 0.88886 0.91703 0.92783 0.92854 0.93687 0.93199 0.91365 0.91280 0.94928 0.94204 0.92575 0.90517 0.89421 0.89297 0.87917 0.88409 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.53 37.16 0.35 -1.64 16 2 C -0.12 -1.61 5.27 -26.73 -0.14 -1.75 16 3 C -0.11 -1.74 1.78 -90.62 -0.16 -1.91 16 4 C -0.11 -1.80 4.52 -26.73 -0.12 -1.92 16 5 C -0.15 -2.30 9.67 37.16 0.36 -1.94 16 6 C 0.13 2.19 4.86 -4.04 -0.02 2.17 16 7 N -0.59 -11.17 2.25 -175.06 -0.39 -11.56 16 8 C 0.23 5.02 5.06 -5.19 -0.03 4.99 16 9 C -0.53 -12.38 7.51 -34.44 -0.26 -12.64 16 10 H 0.07 1.57 6.92 -52.49 -0.36 1.21 16 11 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -23.19 13.29 55.43 0.74 -22.45 16 13 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 C 0.52 9.66 5.46 -10.99 -0.06 9.60 16 18 O -0.57 -11.37 13.99 5.55 0.08 -11.29 16 19 C -0.10 -1.67 2.39 -90.05 -0.21 -1.88 16 20 H 0.11 1.67 6.39 -51.93 -0.33 1.34 16 21 C -0.10 -1.38 6.20 -24.60 -0.15 -1.54 16 22 C -0.18 -2.27 6.72 -26.23 -0.18 -2.44 16 23 C 0.37 5.99 7.88 -28.11 -0.22 5.77 16 24 O -0.46 -8.70 17.99 6.00 0.11 -8.60 16 25 C -0.16 -2.77 5.88 -26.84 -0.16 -2.93 16 26 H 0.05 0.70 6.79 -51.93 -0.35 0.35 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.80 6.33 -51.93 -0.33 0.47 16 31 H 0.09 1.78 6.38 -51.93 -0.33 1.45 16 32 H 0.06 1.26 6.06 -51.93 -0.31 0.95 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.67 6.45 -51.93 -0.34 0.34 16 37 H 0.07 1.13 6.39 -51.92 -0.33 0.80 16 38 H 0.07 1.20 7.30 -51.93 -0.38 0.82 16 39 H 0.03 0.75 8.00 -51.93 -0.42 0.34 16 40 H 0.04 0.87 5.77 -51.93 -0.30 0.57 16 41 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.09 1.28 7.24 -51.93 -0.38 0.90 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.10 1.78 7.82 -51.93 -0.41 1.38 16 47 H 0.12 2.32 7.61 -51.93 -0.39 1.93 16 LS Contribution 363.60 15.07 5.48 5.48 Total: -1.00 -26.89 363.60 -8.01 -34.90 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.90 Total: 5.09 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -1.09 Total: -6.49 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.34 Total: -34.01 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: 0.19 Total: -19.89 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -26.89 -8.01 -34.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584055152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.148 kcal (2) G-P(sol) polarization free energy of solvation -26.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds