Wall clock time and date at job start Tue Mar 31 2020 07:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.47202 * 2 1 4 4 C 1.42895 * 113.99917 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47347 * 29.99968 * 4 3 2 6 6 C 1.53007 * 109.47161 * 149.99941 * 4 3 2 7 7 C 1.50697 * 109.46726 * 294.99501 * 6 4 3 8 8 O 1.21274 * 120.00844 * 0.02562 * 7 6 4 9 9 N 1.34781 * 119.99418 * 179.97438 * 7 6 4 10 10 C 1.46500 * 120.00252 * 0.02562 * 9 7 6 11 11 C 1.46500 * 119.99819 * 180.02562 * 9 7 6 12 12 H 1.09002 * 109.47129 * 359.97438 * 11 9 7 13 13 C 1.52997 * 109.47473 * 120.00094 * 11 9 7 14 14 C 1.50708 * 109.47008 * 240.00262 * 11 9 7 15 15 H 1.08000 * 119.99723 * 359.97438 * 14 11 9 16 16 C 1.37873 * 119.99930 * 179.97438 * 14 11 9 17 17 N 1.31516 * 119.99779 * 179.97438 * 16 14 11 18 18 Si 1.86795 * 120.00284 * 0.02562 * 16 14 11 19 19 H 1.48498 * 109.47308 * 89.99617 * 18 16 14 20 20 H 1.48501 * 109.47369 * 209.99691 * 18 16 14 21 21 H 1.48502 * 109.47235 * 329.99860 * 18 16 14 22 22 C 1.50696 * 109.47054 * 269.99931 * 4 3 2 23 23 C 1.30525 * 124.44985 * 125.02587 * 22 4 3 24 24 C 1.51102 * 111.10557 * 179.97438 * 23 22 4 25 25 C 1.54638 * 104.72713 * 16.43786 * 24 23 22 26 26 C 1.51103 * 124.44890 * 304.72379 * 22 4 3 27 27 H 1.08996 * 109.47022 * 299.99886 * 1 2 3 28 28 H 1.08996 * 109.47419 * 59.99794 * 1 2 3 29 29 H 1.09000 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46696 * 239.99738 * 2 1 3 31 31 H 1.08998 * 109.46991 * 119.99905 * 2 1 3 32 32 H 1.09000 * 109.46876 * 174.99550 * 6 4 3 33 33 H 1.09000 * 109.46608 * 55.00044 * 6 4 3 34 34 H 1.08994 * 109.47032 * 269.99966 * 10 9 7 35 35 H 1.08998 * 109.46624 * 29.99760 * 10 9 7 36 36 H 1.08998 * 109.46783 * 149.99505 * 10 9 7 37 37 H 1.09002 * 109.47153 * 59.99757 * 13 11 9 38 38 H 1.09001 * 109.46832 * 299.99948 * 13 11 9 39 39 H 1.09004 * 109.47261 * 179.97438 * 13 11 9 40 40 H 0.96999 * 119.99874 * 180.02562 * 17 16 14 41 41 H 1.07993 * 124.44861 * 359.97438 * 23 22 4 42 42 H 1.08999 * 110.38851 * 135.24615 * 24 23 22 43 43 H 1.09004 * 110.38970 * 257.62422 * 24 23 22 44 44 H 1.08998 * 111.04294 * 93.39492 * 25 24 23 45 45 H 1.08996 * 111.03902 * 217.33685 * 25 24 23 46 46 H 1.09002 * 110.39034 * 282.40091 * 26 22 4 47 47 H 1.09008 * 110.38660 * 44.77367 * 26 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8631 0.6016 -0.5147 6 6 3.8404 2.7458 -0.7219 7 6 3.4472 2.6542 -2.1737 8 8 2.8935 1.6590 -2.5906 9 7 3.7100 3.6790 -3.0089 10 6 4.3783 4.8815 -2.5054 11 6 3.3273 3.5903 -4.4202 12 1 2.8464 2.6300 -4.6066 13 6 2.3545 4.7222 -4.7571 14 6 4.5571 3.7115 -5.2828 15 1 5.5267 3.8419 -4.8253 16 6 4.4444 3.6557 -6.6558 17 7 5.5177 3.7620 -7.4085 18 14 2.7673 3.4308 -7.4469 19 1 2.1566 4.7606 -7.6993 20 1 2.9201 2.7042 -8.7330 21 1 1.8919 2.6486 -6.5375 22 6 3.9322 1.4995 1.4200 23 6 4.8279 0.6862 1.9097 24 6 5.1069 0.9949 3.3623 25 6 3.9199 1.8785 3.8114 26 6 3.4687 2.4900 2.4628 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.9197 2.8773 -0.6453 33 1 3.3372 3.5963 -0.2619 34 1 3.6304 5.5946 -2.1588 35 1 5.0348 4.6126 -1.6779 36 1 4.9668 5.3317 -3.3047 37 1 2.8358 5.6823 -4.5708 38 1 1.4650 4.6344 -4.1332 39 1 2.0702 4.6564 -5.8073 40 1 5.4383 3.7232 -8.3744 41 1 5.3068 -0.1037 1.3502 42 1 5.1380 0.0753 3.9468 43 1 6.0453 1.5406 3.4612 44 1 3.1287 1.2748 4.2557 45 1 4.2498 2.6564 4.5000 46 1 3.9434 3.4583 2.3043 47 1 2.3835 2.5893 2.4363 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073077534.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:54 Heat of formation + Delta-G solvation = -67.499302 kcal Electronic energy + Delta-G solvation = -24912.003754 eV Core-core repulsion = 21481.297847 eV Total energy + Delta-G solvation = -3430.705907 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.74836 -38.68689 -37.21358 -35.39759 -33.01383 -32.44643 -30.65779 -30.01119 -28.79104 -27.91942 -26.13086 -25.10319 -23.60196 -22.65749 -21.19756 -20.58634 -18.46543 -18.14305 -16.98506 -16.77157 -16.38640 -15.76425 -15.59483 -15.22995 -14.84352 -14.73869 -14.16507 -13.84989 -12.99244 -12.98416 -12.88738 -12.63386 -12.49035 -12.36100 -12.18324 -12.12692 -11.91423 -11.77308 -11.64743 -11.51256 -11.42658 -11.30311 -11.20547 -11.05228 -11.03299 -10.69466 -10.59942 -10.11684 -9.62115 -9.39056 -9.30053 -9.00072 -8.80342 -8.61736 -7.65821 -6.13473 -4.13675 2.03005 3.25092 3.38244 3.38354 3.41987 3.78190 3.94966 4.36986 4.45393 4.51502 4.87183 4.96217 5.12644 5.12875 5.20792 5.22091 5.28273 5.39465 5.49257 5.52668 5.55713 5.59686 5.62210 5.70487 5.77573 5.80328 5.89053 5.91193 5.99638 6.01632 6.06718 6.09989 6.21501 6.28910 6.31889 6.40168 6.43402 6.53701 6.74629 6.87361 7.17923 7.42139 7.45390 7.66670 8.24368 8.51703 8.86500 9.00520 9.48304 10.99262 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.020514 B = 0.003933 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.573405 B = 7116.719206 C = 7791.362087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.064 3.936 3 O -0.365 6.365 4 C 0.157 3.843 5 H 0.073 0.927 6 C -0.133 4.133 7 C 0.510 3.490 8 O -0.547 6.547 9 N -0.590 5.590 10 C 0.083 3.917 11 C 0.230 3.770 12 H 0.062 0.938 13 C -0.159 4.159 14 C -0.527 4.527 15 H 0.078 0.922 16 C 0.075 3.925 17 N -0.896 5.896 18 Si 0.884 3.116 19 H -0.277 1.277 20 H -0.295 1.295 21 H -0.263 1.263 22 C -0.149 4.149 23 C -0.163 4.163 24 C -0.097 4.097 25 C -0.125 4.125 26 C -0.089 4.089 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.043 0.957 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.032 0.968 39 H 0.048 0.952 40 H 0.265 0.735 41 H 0.123 0.877 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.984 -2.728 21.111 21.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.013 4.013 3 O -0.284 6.284 4 C 0.098 3.902 5 H 0.091 0.909 6 C -0.173 4.173 7 C 0.297 3.703 8 O -0.425 6.425 9 N -0.322 5.322 10 C -0.061 4.061 11 C 0.128 3.872 12 H 0.079 0.921 13 C -0.217 4.217 14 C -0.565 4.565 15 H 0.096 0.904 16 C -0.128 4.128 17 N -0.534 5.534 18 Si 0.714 3.286 19 H -0.204 1.204 20 H -0.222 1.222 21 H -0.188 1.188 22 C -0.150 4.150 23 C -0.182 4.182 24 C -0.134 4.134 25 C -0.163 4.163 26 C -0.126 4.126 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.141 0.859 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.331 -3.071 20.685 21.355 hybrid contribution -0.454 -0.131 -0.634 0.791 sum -4.785 -3.202 20.051 20.861 Atomic orbital electron populations 1.21698 0.94237 1.01728 1.02830 1.22381 0.95125 0.84141 0.99658 1.87895 1.19565 1.26240 1.94660 1.20369 0.82263 0.97896 0.89650 0.90861 1.21784 1.02693 0.99064 0.93740 1.20257 0.79383 0.83290 0.87339 1.90623 1.43170 1.30974 1.77747 1.47847 1.57633 1.16086 1.10585 1.21644 0.96715 0.87816 0.99955 1.19246 0.94905 0.95960 0.77118 0.92054 1.22434 0.98594 1.00985 0.99734 1.21183 0.93446 1.51102 0.90765 0.90374 1.24863 0.96600 0.94249 0.97051 1.69879 1.28410 1.49957 1.05151 0.86907 0.84875 0.78201 0.78644 1.20425 1.22207 1.18801 1.22578 0.98310 0.97641 0.96453 1.23192 0.98851 0.99455 0.96659 1.21322 0.98767 0.99640 0.93716 1.22477 0.97813 0.98955 0.97023 1.21234 1.01676 0.97628 0.92032 0.92414 0.91692 0.91579 0.92879 0.94290 0.88139 0.88615 0.93837 0.92561 0.89718 0.92669 0.94850 0.93317 0.92478 0.85935 0.91382 0.90743 0.91313 0.91117 0.90693 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.28 37.16 0.38 -1.38 16 2 C 0.06 0.88 6.46 37.16 0.24 1.12 16 3 O -0.36 -5.77 9.19 -49.65 -0.46 -6.23 16 4 C 0.16 2.27 2.05 -27.88 -0.06 2.21 16 5 H 0.07 1.15 7.52 -51.93 -0.39 0.76 16 6 C -0.13 -1.98 3.91 -27.88 -0.11 -2.08 16 7 C 0.51 10.31 7.55 -10.98 -0.08 10.22 16 8 O -0.55 -12.97 14.75 -8.86 -0.13 -13.10 16 9 N -0.59 -12.32 2.75 -175.26 -0.48 -12.80 16 10 C 0.08 1.36 9.24 59.85 0.55 1.91 16 11 C 0.23 5.64 2.23 -69.08 -0.15 5.49 16 12 H 0.06 1.68 5.96 -51.93 -0.31 1.37 16 13 C -0.16 -3.53 8.67 37.16 0.32 -3.20 16 14 C -0.53 -14.67 8.57 -34.44 -0.30 -14.96 16 15 H 0.08 2.32 7.58 -52.49 -0.40 1.93 16 16 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 17 N -0.90 -27.11 13.96 55.43 0.77 -26.33 16 18 Si 0.88 22.16 24.37 -169.99 -4.14 18.01 16 19 H -0.28 -6.65 6.87 56.52 0.39 -6.26 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 21 H -0.26 -6.56 6.53 56.52 0.37 -6.19 16 22 C -0.15 -1.76 5.03 -100.74 -0.51 -2.26 16 23 C -0.16 -1.72 10.55 -35.70 -0.38 -2.10 16 24 C -0.10 -0.83 6.81 -26.83 -0.18 -1.02 16 25 C -0.13 -1.05 7.20 -24.92 -0.18 -1.23 16 26 C -0.09 -0.90 6.70 -26.74 -0.18 -1.08 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 1.31 7.40 -51.93 -0.38 0.93 16 33 H 0.10 1.28 8.11 -51.93 -0.42 0.86 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 36 H 0.08 1.53 7.02 -51.93 -0.36 1.17 16 37 H 0.05 1.13 7.67 -51.93 -0.40 0.73 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 40 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 LS Contribution 369.34 15.07 5.57 5.57 Total: -1.00 -32.73 369.34 -7.86 -40.59 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -8.27 Total: 0.59 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -0.72 Total: -6.31 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.29 Total: -39.13 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.59 Total: -19.32 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.14 Total: 18.01 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.73 -7.86 -40.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073077534.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.904 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds