Wall clock time and date at job start Tue Mar 31 2020 07:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.47202 * 2 1 4 4 C 1.42895 * 113.99917 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47347 * 29.99968 * 4 3 2 6 6 C 1.53007 * 109.47161 * 149.99941 * 4 3 2 7 7 C 1.50697 * 109.46726 * 294.99501 * 6 4 3 8 8 O 1.21274 * 120.00844 * 0.02562 * 7 6 4 9 9 N 1.34781 * 119.99418 * 179.97438 * 7 6 4 10 10 C 1.46500 * 120.00252 * 0.02562 * 9 7 6 11 11 C 1.46500 * 119.99819 * 180.02562 * 9 7 6 12 12 H 1.09002 * 109.47129 * 359.97438 * 11 9 7 13 13 C 1.52997 * 109.47473 * 120.00094 * 11 9 7 14 14 C 1.50708 * 109.47008 * 240.00262 * 11 9 7 15 15 H 1.08000 * 119.99723 * 359.97438 * 14 11 9 16 16 C 1.37873 * 119.99930 * 179.97438 * 14 11 9 17 17 N 1.31516 * 119.99779 * 179.97438 * 16 14 11 18 18 Si 1.86795 * 120.00284 * 0.02562 * 16 14 11 19 19 H 1.48498 * 109.47308 * 89.99617 * 18 16 14 20 20 H 1.48501 * 109.47369 * 209.99691 * 18 16 14 21 21 H 1.48502 * 109.47235 * 329.99860 * 18 16 14 22 22 C 1.50696 * 109.47054 * 269.99931 * 4 3 2 23 23 C 1.30525 * 124.44985 * 125.02587 * 22 4 3 24 24 C 1.51102 * 111.10557 * 179.97438 * 23 22 4 25 25 C 1.54638 * 104.72713 * 16.43786 * 24 23 22 26 26 C 1.51103 * 124.44890 * 304.72379 * 22 4 3 27 27 H 1.08996 * 109.47022 * 299.99886 * 1 2 3 28 28 H 1.08996 * 109.47419 * 59.99794 * 1 2 3 29 29 H 1.09000 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46696 * 239.99738 * 2 1 3 31 31 H 1.08998 * 109.46991 * 119.99905 * 2 1 3 32 32 H 1.09000 * 109.46876 * 174.99550 * 6 4 3 33 33 H 1.09000 * 109.46608 * 55.00044 * 6 4 3 34 34 H 1.08994 * 109.47032 * 269.99966 * 10 9 7 35 35 H 1.08998 * 109.46624 * 29.99760 * 10 9 7 36 36 H 1.08998 * 109.46783 * 149.99505 * 10 9 7 37 37 H 1.09002 * 109.47153 * 59.99757 * 13 11 9 38 38 H 1.09001 * 109.46832 * 299.99948 * 13 11 9 39 39 H 1.09004 * 109.47261 * 179.97438 * 13 11 9 40 40 H 0.96999 * 119.99874 * 180.02562 * 17 16 14 41 41 H 1.07993 * 124.44861 * 359.97438 * 23 22 4 42 42 H 1.08999 * 110.38851 * 135.24615 * 24 23 22 43 43 H 1.09004 * 110.38970 * 257.62422 * 24 23 22 44 44 H 1.08998 * 111.04294 * 93.39492 * 25 24 23 45 45 H 1.08996 * 111.03902 * 217.33685 * 25 24 23 46 46 H 1.09002 * 110.39034 * 282.40091 * 26 22 4 47 47 H 1.09008 * 110.38660 * 44.77367 * 26 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8631 0.6016 -0.5147 6 6 3.8404 2.7458 -0.7219 7 6 3.4472 2.6542 -2.1737 8 8 2.8935 1.6590 -2.5906 9 7 3.7100 3.6790 -3.0089 10 6 4.3783 4.8815 -2.5054 11 6 3.3273 3.5903 -4.4202 12 1 2.8464 2.6300 -4.6066 13 6 2.3545 4.7222 -4.7571 14 6 4.5571 3.7115 -5.2828 15 1 5.5267 3.8419 -4.8253 16 6 4.4444 3.6557 -6.6558 17 7 5.5177 3.7620 -7.4085 18 14 2.7673 3.4308 -7.4469 19 1 2.1566 4.7606 -7.6993 20 1 2.9201 2.7042 -8.7330 21 1 1.8919 2.6486 -6.5375 22 6 3.9322 1.4995 1.4200 23 6 4.8279 0.6862 1.9097 24 6 5.1069 0.9949 3.3623 25 6 3.9199 1.8785 3.8114 26 6 3.4687 2.4900 2.4628 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.9197 2.8773 -0.6453 33 1 3.3372 3.5963 -0.2619 34 1 3.6304 5.5946 -2.1588 35 1 5.0348 4.6126 -1.6779 36 1 4.9668 5.3317 -3.3047 37 1 2.8358 5.6823 -4.5708 38 1 1.4650 4.6344 -4.1332 39 1 2.0702 4.6564 -5.8073 40 1 5.4383 3.7232 -8.3744 41 1 5.3068 -0.1037 1.3502 42 1 5.1380 0.0753 3.9468 43 1 6.0453 1.5406 3.4612 44 1 3.1287 1.2748 4.2557 45 1 4.2498 2.6564 4.5000 46 1 3.9434 3.4583 2.3043 47 1 2.3835 2.5893 2.4363 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073077534.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:53 Heat of formation + Delta-G solvation = -87.074224 kcal Electronic energy + Delta-G solvation = -24912.852587 eV Core-core repulsion = 21481.297847 eV Total energy + Delta-G solvation = -3431.554739 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.08036 -39.87245 -38.24124 -37.15069 -34.82584 -33.83347 -32.35032 -31.11874 -29.70488 -28.78594 -27.59453 -27.16437 -24.84847 -23.70227 -22.66665 -21.53092 -19.86228 -19.33598 -18.88222 -17.90987 -17.80921 -17.37779 -16.79815 -16.40912 -16.24937 -15.99342 -15.48725 -15.16836 -14.90334 -14.40605 -14.13819 -14.00593 -13.74197 -13.60244 -13.55026 -13.29184 -13.11748 -13.07570 -12.96385 -12.77412 -12.64438 -12.55766 -12.40211 -12.08453 -12.03064 -12.00727 -11.87782 -11.67771 -11.59730 -11.35656 -10.80839 -10.61521 -10.46064 -9.68418 -9.35249 -8.36518 -6.40367 1.17226 1.24221 1.33642 1.42662 1.82712 2.26289 2.31992 2.79507 2.99027 3.53449 3.71655 3.86237 4.02261 4.14354 4.16998 4.26562 4.35136 4.36671 4.41657 4.47002 4.49574 4.52820 4.57252 4.58580 4.65153 4.77324 4.82565 4.85680 4.92088 4.95904 5.00226 5.04526 5.06371 5.08814 5.10170 5.22906 5.25618 5.31209 5.42769 5.50052 5.62003 5.74677 5.89075 6.20286 6.35784 6.61470 6.78019 7.21917 7.43189 8.79474 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.020514 B = 0.003933 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.573405 B = 7116.719206 C = 7791.362087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.061 3.939 3 O -0.383 6.383 4 C 0.157 3.843 5 H 0.050 0.950 6 C -0.120 4.120 7 C 0.500 3.500 8 O -0.591 6.591 9 N -0.600 5.600 10 C 0.079 3.921 11 C 0.232 3.768 12 H 0.027 0.973 13 C -0.152 4.152 14 C -0.525 4.525 15 H 0.047 0.953 16 C 0.024 3.976 17 N -0.939 5.939 18 Si 0.940 3.060 19 H -0.253 1.253 20 H -0.295 1.295 21 H -0.266 1.266 22 C -0.165 4.165 23 C -0.157 4.157 24 C -0.096 4.096 25 C -0.120 4.120 26 C -0.087 4.087 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.029 0.971 31 H 0.056 0.944 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.040 0.960 40 H 0.268 0.732 41 H 0.121 0.879 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.765 -1.811 23.739 24.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.015 4.015 3 O -0.303 6.303 4 C 0.098 3.902 5 H 0.068 0.932 6 C -0.159 4.159 7 C 0.289 3.711 8 O -0.472 6.472 9 N -0.331 5.331 10 C -0.063 4.063 11 C 0.128 3.872 12 H 0.045 0.955 13 C -0.209 4.209 14 C -0.563 4.563 15 H 0.065 0.935 16 C -0.175 4.175 17 N -0.578 5.578 18 Si 0.767 3.233 19 H -0.179 1.179 20 H -0.222 1.222 21 H -0.191 1.191 22 C -0.165 4.165 23 C -0.175 4.175 24 C -0.133 4.133 25 C -0.158 4.158 26 C -0.124 4.124 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.139 0.861 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.102 0.898 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.103 -2.121 23.345 23.991 hybrid contribution -0.112 -0.484 -1.408 1.493 sum -5.215 -2.604 21.937 22.699 Atomic orbital electron populations 1.21696 0.92814 1.03115 1.02331 1.22464 0.96312 0.83477 0.99260 1.87854 1.20374 1.27228 1.94840 1.20342 0.81767 0.96710 0.91352 0.93197 1.21800 1.04156 1.00336 0.89640 1.21221 0.78382 0.82186 0.89299 1.90599 1.45102 1.32598 1.78946 1.47951 1.58055 1.17799 1.09249 1.21872 0.97645 0.86628 1.00164 1.18902 0.93701 0.95379 0.79175 0.95463 1.22288 0.98697 1.00427 0.99531 1.21384 0.93599 1.50021 0.91325 0.93488 1.25615 0.99989 0.94165 0.97731 1.69997 1.30552 1.51694 1.05590 0.85991 0.80730 0.79149 0.77382 1.17886 1.22217 1.19060 1.22406 0.99449 0.99373 0.95266 1.23459 0.97691 0.98484 0.97914 1.21372 0.99370 1.00443 0.92106 1.22488 0.97667 0.99298 0.96321 1.21253 1.01106 0.97699 0.92389 0.91232 0.93713 0.89317 0.95302 0.92582 0.85911 0.86288 0.90885 0.89195 0.91862 0.91119 0.92898 0.94131 0.92254 0.86077 0.90211 0.89567 0.91176 0.89351 0.89783 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 10.28 71.98 0.74 -2.58 16 2 C 0.06 1.70 6.46 71.98 0.46 2.17 16 3 O -0.38 -12.07 9.19 -135.19 -1.24 -13.31 16 4 C 0.16 4.46 2.05 29.85 0.06 4.52 16 5 H 0.05 1.62 7.52 -2.39 -0.02 1.60 16 6 C -0.12 -3.38 3.91 29.85 0.12 -3.27 16 7 C 0.50 20.16 7.55 87.66 0.66 20.82 16 8 O -0.59 -28.95 14.75 10.78 0.16 -28.79 16 9 N -0.60 -24.75 2.75 -826.80 -2.28 -27.03 16 10 C 0.08 2.45 9.24 127.77 1.18 3.63 16 11 C 0.23 11.48 2.23 44.25 0.10 11.58 16 12 H 0.03 1.54 5.96 -2.39 -0.01 1.53 16 13 C -0.15 -6.48 8.67 71.98 0.62 -5.86 16 14 C -0.52 -29.94 8.57 25.60 0.22 -29.72 16 15 H 0.05 2.90 7.58 -2.91 -0.02 2.88 16 16 C 0.02 1.39 5.45 84.65 0.46 1.85 16 17 N -0.94 -58.09 13.96 21.45 0.30 -57.79 16 18 Si 0.94 46.06 24.37 68.60 1.67 47.73 16 19 H -0.25 -11.39 6.87 99.48 0.68 -10.70 16 20 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 21 H -0.27 -13.03 6.53 99.48 0.65 -12.38 16 22 C -0.16 -3.58 5.03 -15.87 -0.08 -3.66 16 23 C -0.16 -3.00 10.55 26.26 0.28 -2.73 16 24 C -0.10 -1.34 6.81 30.53 0.21 -1.13 16 25 C -0.12 -1.62 7.20 31.77 0.23 -1.39 16 26 C -0.09 -1.54 6.70 30.59 0.21 -1.34 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.03 0.92 8.08 -2.39 -0.02 0.90 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.12 2.90 7.40 -2.39 -0.02 2.88 16 33 H 0.12 2.83 8.11 -2.39 -0.02 2.81 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.09 2.15 6.44 -2.39 -0.02 2.13 16 36 H 0.06 2.24 7.02 -2.39 -0.02 2.23 16 37 H 0.07 2.77 7.67 -2.39 -0.02 2.75 16 38 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.04 1.79 3.27 -2.38 -0.01 1.78 16 40 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 41 H 0.12 2.29 8.06 -2.91 -0.02 2.26 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 43 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -73.71 369.34 4.92 -68.79 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.84 Total: 17.51 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 5.47 Total: -7.11 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -1.98 Total: -84.82 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -1.08 Total: -42.11 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.67 Total: 47.73 kcal Total: -73.71 4.92 -68.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073077534.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.285 kcal (2) G-P(sol) polarization free energy of solvation -73.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds