Wall clock time and date at job start Tue Mar 31 2020 07:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47272 * 2 1 4 4 C 1.42897 * 113.99668 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47565 * 30.00613 * 4 3 2 6 6 C 1.53005 * 109.47109 * 150.00141 * 4 3 2 7 7 C 1.50703 * 109.46879 * 294.99980 * 6 4 3 8 8 O 1.21275 * 120.00052 * 359.97438 * 7 6 4 9 9 N 1.34779 * 119.99897 * 179.97438 * 7 6 4 10 10 C 1.46503 * 119.99875 * 0.02562 * 9 7 6 11 11 C 1.46496 * 119.99876 * 180.02562 * 9 7 6 12 12 H 1.09001 * 109.47459 * 0.02562 * 11 9 7 13 13 C 1.53006 * 109.46995 * 240.00324 * 11 9 7 14 14 C 1.50697 * 109.47428 * 120.00071 * 11 9 7 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 11 9 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 11 9 17 17 N 1.31510 * 119.99600 * 0.02562 * 16 14 11 18 18 Si 1.86805 * 120.00227 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.46821 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46996 * 120.00312 * 18 16 14 21 21 H 1.48495 * 109.46665 * 239.99993 * 18 16 14 22 22 C 1.50700 * 109.47119 * 269.99867 * 4 3 2 23 23 C 1.30525 * 124.44514 * 125.02895 * 22 4 3 24 24 C 1.51101 * 111.10402 * 179.97438 * 23 22 4 25 25 C 1.54637 * 104.72291 * 16.43723 * 24 23 22 26 26 C 1.51104 * 124.44729 * 304.72249 * 22 4 3 27 27 H 1.08997 * 109.47266 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47495 * 299.99898 * 1 2 3 29 29 H 1.09003 * 109.47080 * 59.99809 * 1 2 3 30 30 H 1.09000 * 109.46947 * 239.99570 * 2 1 3 31 31 H 1.09003 * 109.47080 * 120.00191 * 2 1 3 32 32 H 1.08992 * 109.47507 * 175.00109 * 6 4 3 33 33 H 1.09003 * 109.46669 * 54.99631 * 6 4 3 34 34 H 1.08997 * 109.46807 * 269.99587 * 10 9 7 35 35 H 1.08998 * 109.47196 * 29.99871 * 10 9 7 36 36 H 1.09000 * 109.46808 * 150.00250 * 10 9 7 37 37 H 1.09001 * 109.47002 * 299.99701 * 13 11 9 38 38 H 1.08993 * 109.46955 * 60.00138 * 13 11 9 39 39 H 1.09000 * 109.47050 * 179.97438 * 13 11 9 40 40 H 0.97006 * 120.00212 * 179.97438 * 17 16 14 41 41 H 1.08000 * 124.45038 * 0.02562 * 23 22 4 42 42 H 1.09001 * 110.39143 * 135.24388 * 24 23 22 43 43 H 1.09004 * 110.39275 * 257.62652 * 24 23 22 44 44 H 1.08999 * 111.03845 * 93.39959 * 25 24 23 45 45 H 1.09006 * 111.03751 * 217.32968 * 25 24 23 46 46 H 1.08998 * 110.39089 * 282.39481 * 26 22 4 47 47 H 1.08994 * 110.38211 * 44.78109 * 26 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8636 0.6014 -0.5130 6 6 3.8410 2.7455 -0.7207 7 6 3.4490 2.6536 -2.1729 8 8 2.8964 1.6579 -2.5900 9 7 3.7124 3.6781 -3.0081 10 6 4.3805 4.8807 -2.5044 11 6 3.3308 3.5890 -4.4197 12 1 2.8492 2.6291 -4.6061 13 6 4.5801 3.7117 -5.2945 14 6 2.3730 4.7039 -4.7525 15 1 2.0784 5.4086 -3.9890 16 6 1.8736 4.8249 -6.0319 17 7 2.2328 3.9671 -6.9618 18 14 0.6869 6.2073 -6.4446 19 1 0.4451 7.0303 -5.2324 20 1 1.2708 7.0587 -7.5120 21 1 -0.5978 5.6321 -6.9175 22 6 3.9310 1.4998 1.4216 23 6 4.8264 0.6866 1.9122 24 6 5.1041 0.9956 3.3650 25 6 3.9168 1.8794 3.8128 26 6 3.4667 2.4907 2.4637 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.9202 2.8770 -0.6434 33 1 3.3375 3.5962 -0.2615 34 1 3.6323 5.5940 -2.1586 35 1 5.0364 4.6121 -1.6763 36 1 4.9696 5.3307 -3.3034 37 1 5.0613 4.6718 -5.1081 38 1 5.2727 2.9053 -5.0538 39 1 4.2962 3.6450 -6.3448 40 1 1.8812 4.0519 -7.8619 41 1 5.3063 -0.1029 1.3530 42 1 5.1347 0.0763 3.9497 43 1 6.0424 1.5414 3.4645 44 1 3.1252 1.2758 4.2566 45 1 4.2461 2.6575 4.5015 46 1 3.9417 3.4589 2.3054 47 1 2.3817 2.5899 2.4363 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073077539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:59 Heat of formation + Delta-G solvation = -92.503199 kcal Electronic energy + Delta-G solvation = -24869.674761 eV Core-core repulsion = 21437.884604 eV Total energy + Delta-G solvation = -3431.790157 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.00964 -39.82490 -38.22659 -37.03397 -34.84398 -33.75762 -31.73163 -30.97127 -29.62515 -28.73762 -27.55871 -27.26920 -24.75271 -23.70892 -22.60732 -21.52279 -19.85031 -19.28402 -18.49666 -17.86881 -17.81299 -17.17877 -16.75245 -16.39774 -16.08860 -16.00447 -15.53316 -15.11827 -14.65333 -14.26362 -14.11351 -13.69439 -13.57342 -13.48247 -13.31521 -13.13552 -13.03720 -12.92901 -12.84617 -12.65151 -12.57346 -12.54898 -12.39207 -12.18134 -12.11011 -12.03270 -12.01232 -11.87774 -11.66290 -11.16169 -10.64408 -10.49017 -10.41344 -9.67544 -9.27571 -8.14659 -6.31063 1.18457 1.39159 1.40993 1.52506 1.89062 2.34040 2.51780 2.82496 3.12851 3.56487 3.72633 3.88481 4.03891 4.14631 4.16948 4.26505 4.35208 4.38380 4.45761 4.48621 4.53594 4.61298 4.71325 4.78037 4.83091 4.85782 4.88831 4.92206 4.96256 5.03593 5.04562 5.06912 5.08772 5.10246 5.22242 5.25856 5.42622 5.47290 5.62788 5.64465 5.69623 5.90298 6.06088 6.17646 6.38557 6.77492 6.89014 7.34281 7.54443 8.89681 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019622 B = 0.003812 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.651989 B = 7343.682804 C = 7840.790021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.063 3.937 3 O -0.388 6.388 4 C 0.156 3.844 5 H 0.054 0.946 6 C -0.119 4.119 7 C 0.495 3.505 8 O -0.595 6.595 9 N -0.605 5.605 10 C 0.083 3.917 11 C 0.262 3.738 12 H 0.006 0.994 13 C -0.132 4.132 14 C -0.536 4.536 15 H 0.057 0.943 16 C 0.014 3.986 17 N -0.918 5.918 18 Si 0.964 3.036 19 H -0.266 1.266 20 H -0.272 1.272 21 H -0.285 1.285 22 C -0.165 4.165 23 C -0.153 4.153 24 C -0.095 4.095 25 C -0.121 4.121 26 C -0.089 4.089 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.029 0.971 31 H 0.059 0.941 32 H 0.130 0.870 33 H 0.109 0.891 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.020 0.980 39 H 0.066 0.934 40 H 0.264 0.736 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.519 -2.922 21.506 22.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.013 4.013 3 O -0.308 6.308 4 C 0.098 3.902 5 H 0.072 0.928 6 C -0.159 4.159 7 C 0.284 3.716 8 O -0.477 6.477 9 N -0.336 5.336 10 C -0.059 4.059 11 C 0.159 3.841 12 H 0.024 0.976 13 C -0.190 4.190 14 C -0.575 4.575 15 H 0.075 0.925 16 C -0.185 4.185 17 N -0.557 5.557 18 Si 0.789 3.211 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.212 1.212 22 C -0.166 4.166 23 C -0.171 4.171 24 C -0.132 4.132 25 C -0.158 4.158 26 C -0.126 4.126 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.148 0.852 33 H 0.127 0.873 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.039 0.961 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.143 0.857 42 H 0.099 0.901 43 H 0.106 0.894 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.101 0.899 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.092 -3.280 21.093 22.199 hybrid contribution -0.684 0.213 -1.157 1.361 sum 5.409 -3.068 19.935 20.883 Atomic orbital electron populations 1.21708 0.93179 1.03123 1.02111 1.22447 0.96109 0.83467 0.99314 1.87883 1.20745 1.27309 1.94840 1.20375 0.81612 0.96783 0.91444 0.92819 1.21806 1.04307 1.00059 0.89724 1.21249 0.78522 0.82517 0.89293 1.90600 1.44929 1.33242 1.78944 1.48243 1.57843 1.17126 1.10402 1.21799 0.97049 0.86761 1.00276 1.18487 0.92889 0.95948 0.76730 0.97616 1.21869 0.96366 0.98353 1.02435 1.21615 1.27088 1.13042 0.95749 0.92450 1.25740 0.98048 0.98679 0.96082 1.70032 1.45039 1.37489 1.03176 0.85415 0.78326 0.78965 0.78364 1.19019 1.19770 1.21152 1.22383 0.99573 0.99461 0.95172 1.23456 0.97543 0.98313 0.97815 1.21369 0.99263 1.00410 0.92140 1.22489 0.97792 0.99340 0.96178 1.21256 1.00890 0.97815 0.92680 0.89079 0.91296 0.94224 0.95269 0.92249 0.85182 0.87290 0.93031 0.88562 0.91130 0.93279 0.96105 0.91496 0.92684 0.85682 0.90107 0.89356 0.91303 0.89363 0.89881 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 10.28 71.98 0.74 -3.11 16 2 C 0.06 1.91 6.46 71.98 0.46 2.37 16 3 O -0.39 -13.46 9.19 -135.21 -1.24 -14.71 16 4 C 0.16 4.66 2.05 29.85 0.06 4.72 16 5 H 0.05 1.75 7.52 -2.39 -0.02 1.73 16 6 C -0.12 -3.56 3.91 29.85 0.12 -3.45 16 7 C 0.49 21.26 7.55 87.66 0.66 21.92 16 8 O -0.60 -31.27 14.75 10.76 0.16 -31.11 16 9 N -0.61 -26.51 2.75 -826.80 -2.28 -28.79 16 10 C 0.08 2.68 9.48 127.77 1.21 3.90 16 11 C 0.26 14.12 2.64 44.25 0.12 14.23 16 12 H 0.01 0.38 6.90 -2.39 -0.02 0.36 16 13 C -0.13 -6.51 8.95 71.98 0.64 -5.87 16 14 C -0.54 -30.22 8.37 25.60 0.21 -30.01 16 15 H 0.06 3.17 7.65 -2.91 -0.02 3.15 16 16 C 0.01 0.78 5.30 84.66 0.45 1.22 16 17 N -0.92 -54.23 11.32 21.45 0.24 -53.98 16 18 Si 0.96 44.25 29.54 68.60 2.03 46.27 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 21 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 22 C -0.17 -3.71 5.03 -15.87 -0.08 -3.79 16 23 C -0.15 -2.86 10.55 26.26 0.28 -2.59 16 24 C -0.10 -1.30 6.81 30.53 0.21 -1.09 16 25 C -0.12 -1.71 7.20 31.77 0.23 -1.48 16 26 C -0.09 -1.71 6.70 30.59 0.21 -1.50 16 27 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.03 0.99 8.09 -2.39 -0.02 0.97 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.13 2.97 7.40 -2.39 -0.02 2.95 16 33 H 0.11 2.99 8.11 -2.39 -0.02 2.97 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.10 2.20 6.44 -2.39 -0.02 2.19 16 36 H 0.07 2.28 6.43 -2.39 -0.02 2.27 16 37 H 0.05 2.18 6.66 -2.39 -0.02 2.17 16 38 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16 40 H 0.26 14.70 8.31 -92.70 -0.77 13.93 16 41 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 42 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -73.10 375.48 5.35 -67.75 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.92 Total: 19.10 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 5.52 Total: -4.53 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -2.03 Total: -82.77 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -1.08 Total: -45.82 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -73.10 5.35 -67.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073077539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.751 kcal (2) G-P(sol) polarization free energy of solvation -73.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds