Wall clock time and date at job start Tue Mar 31 2020 07:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47174 * 330.00433 * 4 3 2 6 6 C 1.53004 * 109.46773 * 210.00101 * 4 3 2 7 7 C 1.50694 * 109.47234 * 65.00508 * 6 4 3 8 8 O 1.21279 * 119.99869 * 359.97438 * 7 6 4 9 9 N 1.34775 * 120.00332 * 179.97438 * 7 6 4 10 10 C 1.46507 * 119.99639 * 359.97438 * 9 7 6 11 11 C 1.46497 * 120.00443 * 179.97438 * 9 7 6 12 12 H 1.09004 * 109.47021 * 0.02562 * 11 9 7 13 13 C 1.52997 * 109.47137 * 239.99961 * 11 9 7 14 14 C 1.50701 * 109.46984 * 119.99898 * 11 9 7 15 15 H 1.07999 * 120.00254 * 359.97438 * 14 11 9 16 16 C 1.37874 * 120.00082 * 180.02562 * 14 11 9 17 17 N 1.31515 * 119.99869 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 120.00236 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.47090 * 60.00350 * 18 16 14 20 20 H 1.48502 * 109.47206 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47460 * 300.00019 * 18 16 14 22 22 C 1.50703 * 109.46880 * 90.00138 * 4 3 2 23 23 C 1.30518 * 124.44955 * 235.02400 * 22 4 3 24 24 C 1.51104 * 111.10819 * 179.97438 * 23 22 4 25 25 C 1.54636 * 104.71982 * 16.43453 * 24 23 22 26 26 C 1.51103 * 124.44463 * 54.72382 * 22 4 3 27 27 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 29 29 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 30 30 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 31 31 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 32 32 H 1.09007 * 109.46514 * 185.00179 * 6 4 3 33 33 H 1.08999 * 109.47336 * 304.99962 * 6 4 3 34 34 H 1.09004 * 109.46887 * 90.00024 * 10 9 7 35 35 H 1.08991 * 109.47052 * 210.00164 * 10 9 7 36 36 H 1.09004 * 109.47406 * 330.00301 * 10 9 7 37 37 H 1.08996 * 109.46920 * 180.02562 * 13 11 9 38 38 H 1.09000 * 109.46712 * 299.99872 * 13 11 9 39 39 H 1.08996 * 109.47165 * 59.99635 * 13 11 9 40 40 H 0.96999 * 120.00471 * 180.02562 * 17 16 14 41 41 H 1.08003 * 124.44835 * 359.95482 * 23 22 4 42 42 H 1.09001 * 110.38671 * 135.24281 * 24 23 22 43 43 H 1.09001 * 110.38358 * 257.62742 * 24 23 22 44 44 H 1.09001 * 111.03838 * 93.40634 * 25 24 23 45 45 H 1.09006 * 111.03580 * 217.33096 * 25 24 23 46 46 H 1.09000 * 110.38796 * 282.39113 * 26 22 4 47 47 H 1.09003 * 110.38886 * 44.77568 * 26 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8631 0.6017 0.5147 6 6 3.8402 2.7459 0.7219 7 6 3.4471 2.6544 2.1737 8 8 2.8935 1.6590 2.5905 9 7 3.7106 3.6786 3.0092 10 6 4.3798 4.8808 2.5058 11 6 3.3279 3.5899 4.4205 12 1 2.8463 2.6299 4.6067 13 6 2.3560 4.7225 4.7575 14 6 4.5578 3.7100 5.2830 15 1 5.5276 3.8390 4.8256 16 6 4.4452 3.6541 6.6559 17 7 3.2644 3.4955 7.2129 18 14 5.9698 3.8022 7.7250 19 1 6.6266 5.1098 7.4720 20 1 5.5820 3.7112 9.1556 21 1 6.9128 2.7029 7.3975 22 6 3.9322 1.4996 -1.4201 23 6 4.8272 0.6858 -1.9101 24 6 5.1054 0.9938 -3.3630 25 6 4.5319 2.4133 -3.5805 26 6 3.4599 2.4825 -2.4660 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.9196 2.8774 0.6453 33 1 3.3371 3.5964 0.2620 34 1 3.6324 5.5946 2.1595 35 1 4.9687 5.3304 3.3052 36 1 5.0362 4.6117 1.6782 37 1 2.0717 4.6568 5.8077 38 1 2.8381 5.6822 4.5714 39 1 1.4665 4.6357 4.1336 40 1 3.1850 3.4565 8.1788 41 1 5.3063 -0.1040 -1.3505 42 1 6.1784 0.9843 -3.5544 43 1 4.5974 0.2762 -4.0072 44 1 5.3009 3.1723 -3.4365 45 1 4.0749 2.5039 -4.5659 46 1 2.4856 2.1852 -2.8541 47 1 3.4124 3.4881 -2.0482 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073077540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:02 Heat of formation + Delta-G solvation = -75.805838 kcal Electronic energy + Delta-G solvation = -24846.145150 eV Core-core repulsion = 21415.079044 eV Total energy + Delta-G solvation = -3431.066105 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.65813 -38.55591 -37.15464 -35.18753 -32.98622 -32.42950 -30.25843 -29.59470 -28.64850 -27.77684 -25.97597 -25.17809 -23.46588 -22.59214 -21.06635 -20.55945 -18.42283 -18.08968 -16.73304 -16.59331 -16.25999 -15.67466 -15.56297 -15.05732 -14.77552 -14.44350 -14.26072 -13.71348 -13.05255 -12.82788 -12.65851 -12.58204 -12.35266 -12.22295 -11.97884 -11.82317 -11.72334 -11.54155 -11.49816 -11.40223 -11.23009 -11.15894 -11.03671 -10.96212 -10.81277 -10.61004 -10.53611 -10.21615 -10.12766 -9.32319 -9.13413 -8.92498 -8.72627 -8.38107 -7.49015 -6.03734 -4.11767 2.06037 3.29191 3.34356 3.35663 3.52780 3.88454 4.08312 4.41711 4.48923 4.54986 4.89171 5.02328 5.18968 5.21441 5.26975 5.28131 5.30870 5.45523 5.54831 5.58273 5.60864 5.64157 5.66327 5.73437 5.82092 5.85787 5.90753 5.97234 6.03540 6.11358 6.11779 6.16618 6.28135 6.41963 6.46552 6.77479 6.81806 6.90644 7.13523 7.49641 7.52542 7.60439 7.76813 8.07540 8.25504 8.62637 8.88031 9.17521 9.54802 11.01455 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018714 B = 0.003818 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.853274 B = 7331.625255 C = 8000.481861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.064 3.936 3 O -0.364 6.364 4 C 0.157 3.843 5 H 0.073 0.927 6 C -0.134 4.134 7 C 0.507 3.493 8 O -0.547 6.547 9 N -0.596 5.596 10 C 0.085 3.915 11 C 0.259 3.741 12 H 0.062 0.938 13 C -0.145 4.145 14 C -0.526 4.526 15 H 0.058 0.942 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.898 3.102 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.277 1.277 22 C -0.148 4.148 23 C -0.165 4.165 24 C -0.097 4.097 25 C -0.126 4.126 26 C -0.086 4.086 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.092 0.908 38 H 0.028 0.972 39 H 0.011 0.989 40 H 0.263 0.737 41 H 0.122 0.878 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.154 -2.122 -19.799 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.013 4.013 3 O -0.283 6.283 4 C 0.098 3.902 5 H 0.091 0.909 6 C -0.174 4.174 7 C 0.294 3.706 8 O -0.425 6.425 9 N -0.328 5.328 10 C -0.060 4.060 11 C 0.159 3.841 12 H 0.080 0.920 13 C -0.204 4.204 14 C -0.564 4.564 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.726 3.274 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.148 4.148 23 C -0.183 4.183 24 C -0.134 4.134 25 C -0.164 4.164 26 C -0.123 4.123 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.047 0.953 39 H 0.030 0.970 40 H 0.073 0.927 41 H 0.140 0.860 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.635 -2.483 -19.360 19.529 hybrid contribution 1.105 -0.010 0.647 1.281 sum 1.741 -2.493 -18.713 18.958 Atomic orbital electron populations 1.21700 0.94218 1.01704 1.02888 1.22377 0.95166 0.84169 0.99578 1.87911 1.19527 1.26187 1.94662 1.20378 0.82287 0.97961 0.89535 0.90939 1.21792 1.02450 0.98909 0.94217 1.20213 0.79653 0.83552 0.87187 1.90626 1.43144 1.31023 1.77716 1.48210 1.57344 1.15576 1.11652 1.21579 0.96610 0.88254 0.99516 1.18886 0.94305 0.96953 0.73992 0.91981 1.22069 0.96788 0.98088 1.03447 1.21303 0.93194 1.50872 0.91070 0.92376 1.24892 0.96128 0.94930 0.97833 1.69876 1.22402 1.49401 1.10925 0.86569 0.83019 0.78566 0.79290 1.20251 1.21188 1.20297 1.22612 0.97811 0.98174 0.96239 1.23177 0.99275 0.99645 0.96251 1.21313 1.00950 0.96845 0.94276 1.22499 0.98346 0.96867 0.98664 1.21212 0.98690 0.98710 0.93693 0.91603 0.91571 0.92458 0.94420 0.92854 0.88402 0.88791 0.94017 0.90233 0.92938 0.88971 0.95278 0.97031 0.92678 0.85965 0.91330 0.90944 0.91104 0.91195 0.90615 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 10.28 37.16 0.38 -1.48 16 2 C 0.06 0.92 6.46 37.16 0.24 1.16 16 3 O -0.36 -6.04 9.19 -49.66 -0.46 -6.49 16 4 C 0.16 2.37 2.05 -27.88 -0.06 2.31 16 5 H 0.07 1.18 7.52 -51.93 -0.39 0.79 16 6 C -0.13 -2.09 3.91 -27.88 -0.11 -2.20 16 7 C 0.51 10.74 7.55 -10.99 -0.08 10.66 16 8 O -0.55 -13.61 14.75 -8.87 -0.13 -13.74 16 9 N -0.60 -13.02 2.75 -175.26 -0.48 -13.51 16 10 C 0.08 1.45 9.24 59.85 0.55 2.00 16 11 C 0.26 6.76 2.63 -69.08 -0.18 6.58 16 12 H 0.06 1.88 6.90 -51.93 -0.36 1.53 16 13 C -0.15 -3.58 8.97 37.16 0.33 -3.25 16 14 C -0.53 -14.37 7.99 -34.44 -0.28 -14.65 16 15 H 0.06 1.55 7.33 -52.49 -0.38 1.17 16 16 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 17 N -0.89 -25.45 11.32 55.43 0.63 -24.82 16 18 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.15 -1.81 5.03 -100.73 -0.51 -2.31 16 23 C -0.17 -1.79 10.55 -35.69 -0.38 -2.17 16 24 C -0.10 -0.85 6.81 -26.83 -0.18 -1.03 16 25 C -0.13 -1.08 7.20 -24.93 -0.18 -1.26 16 26 C -0.09 -0.91 6.71 -26.74 -0.18 -1.09 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 32 H 0.10 1.33 7.40 -51.93 -0.38 0.95 16 33 H 0.09 1.34 7.78 -51.93 -0.40 0.94 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.45 7.02 -51.93 -0.36 1.08 16 36 H 0.05 0.73 6.44 -51.93 -0.33 0.39 16 37 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 38 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 39 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.07 0.75 7.82 -51.93 -0.41 0.34 16 LS Contribution 375.52 15.07 5.66 5.66 Total: -1.00 -31.58 375.52 -8.89 -40.47 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -8.37 Total: 1.32 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -0.72 Total: -5.05 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.15 Total: -38.33 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.59 Total: -20.24 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.58 -8.89 -40.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073077540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.332 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds