Wall clock time and date at job start Tue Mar 31 2020 07:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47174 * 330.00433 * 4 3 2 6 6 C 1.53004 * 109.46773 * 210.00101 * 4 3 2 7 7 C 1.50694 * 109.47234 * 65.00508 * 6 4 3 8 8 O 1.21279 * 119.99869 * 359.97438 * 7 6 4 9 9 N 1.34775 * 120.00332 * 179.97438 * 7 6 4 10 10 C 1.46507 * 119.99639 * 359.97438 * 9 7 6 11 11 C 1.46497 * 120.00443 * 179.97438 * 9 7 6 12 12 H 1.09004 * 109.47021 * 0.02562 * 11 9 7 13 13 C 1.52997 * 109.47137 * 239.99961 * 11 9 7 14 14 C 1.50701 * 109.46984 * 119.99898 * 11 9 7 15 15 H 1.07999 * 120.00254 * 359.97438 * 14 11 9 16 16 C 1.37874 * 120.00082 * 180.02562 * 14 11 9 17 17 N 1.31515 * 119.99869 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 120.00236 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.47090 * 60.00350 * 18 16 14 20 20 H 1.48502 * 109.47206 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47460 * 300.00019 * 18 16 14 22 22 C 1.50703 * 109.46880 * 90.00138 * 4 3 2 23 23 C 1.30518 * 124.44955 * 235.02400 * 22 4 3 24 24 C 1.51104 * 111.10819 * 179.97438 * 23 22 4 25 25 C 1.54636 * 104.71982 * 16.43453 * 24 23 22 26 26 C 1.51103 * 124.44463 * 54.72382 * 22 4 3 27 27 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 29 29 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 30 30 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 31 31 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 32 32 H 1.09007 * 109.46514 * 185.00179 * 6 4 3 33 33 H 1.08999 * 109.47336 * 304.99962 * 6 4 3 34 34 H 1.09004 * 109.46887 * 90.00024 * 10 9 7 35 35 H 1.08991 * 109.47052 * 210.00164 * 10 9 7 36 36 H 1.09004 * 109.47406 * 330.00301 * 10 9 7 37 37 H 1.08996 * 109.46920 * 180.02562 * 13 11 9 38 38 H 1.09000 * 109.46712 * 299.99872 * 13 11 9 39 39 H 1.08996 * 109.47165 * 59.99635 * 13 11 9 40 40 H 0.96999 * 120.00471 * 180.02562 * 17 16 14 41 41 H 1.08003 * 124.44835 * 359.95482 * 23 22 4 42 42 H 1.09001 * 110.38671 * 135.24281 * 24 23 22 43 43 H 1.09001 * 110.38358 * 257.62742 * 24 23 22 44 44 H 1.09001 * 111.03838 * 93.40634 * 25 24 23 45 45 H 1.09006 * 111.03580 * 217.33096 * 25 24 23 46 46 H 1.09000 * 110.38796 * 282.39113 * 26 22 4 47 47 H 1.09003 * 110.38886 * 44.77568 * 26 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8631 0.6017 0.5147 6 6 3.8402 2.7459 0.7219 7 6 3.4471 2.6544 2.1737 8 8 2.8935 1.6590 2.5905 9 7 3.7106 3.6786 3.0092 10 6 4.3798 4.8808 2.5058 11 6 3.3279 3.5899 4.4205 12 1 2.8463 2.6299 4.6067 13 6 2.3560 4.7225 4.7575 14 6 4.5578 3.7100 5.2830 15 1 5.5276 3.8390 4.8256 16 6 4.4452 3.6541 6.6559 17 7 3.2644 3.4955 7.2129 18 14 5.9698 3.8022 7.7250 19 1 6.6266 5.1098 7.4720 20 1 5.5820 3.7112 9.1556 21 1 6.9128 2.7029 7.3975 22 6 3.9322 1.4996 -1.4201 23 6 4.8272 0.6858 -1.9101 24 6 5.1054 0.9938 -3.3630 25 6 4.5319 2.4133 -3.5805 26 6 3.4599 2.4825 -2.4660 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.9196 2.8774 0.6453 33 1 3.3371 3.5964 0.2620 34 1 3.6324 5.5946 2.1595 35 1 4.9687 5.3304 3.3052 36 1 5.0362 4.6117 1.6782 37 1 2.0717 4.6568 5.8077 38 1 2.8381 5.6822 4.5714 39 1 1.4665 4.6357 4.1336 40 1 3.1850 3.4565 8.1788 41 1 5.3063 -0.1040 -1.3505 42 1 6.1784 0.9843 -3.5544 43 1 4.5974 0.2762 -4.0072 44 1 5.3009 3.1723 -3.4365 45 1 4.0749 2.5039 -4.5659 46 1 2.4856 2.1852 -2.8541 47 1 3.4124 3.4881 -2.0482 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073077540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:01 Heat of formation + Delta-G solvation = -93.020656 kcal Electronic energy + Delta-G solvation = -24846.891640 eV Core-core repulsion = 21415.079044 eV Total energy + Delta-G solvation = -3431.812596 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.01334 -39.82362 -38.23834 -37.02824 -34.83786 -33.74853 -31.73389 -30.95816 -29.66268 -28.73965 -27.49956 -27.29796 -24.75528 -23.70339 -22.59065 -21.55202 -19.87323 -19.29460 -18.49336 -17.87246 -17.76225 -17.19864 -16.71164 -16.43801 -16.16757 -15.94500 -15.52421 -15.09850 -14.66308 -14.15268 -14.09523 -13.72563 -13.54959 -13.51446 -13.36332 -13.11137 -12.95726 -12.90119 -12.77552 -12.68919 -12.63404 -12.57789 -12.47806 -12.18806 -12.11676 -12.05652 -11.99545 -11.86374 -11.64564 -11.19355 -10.63728 -10.48927 -10.41137 -9.68309 -9.27402 -8.13877 -6.30945 1.17255 1.41114 1.43749 1.51186 1.89386 2.33691 2.52266 2.81192 3.13636 3.55634 3.71516 3.89493 4.03790 4.14285 4.17348 4.26412 4.35706 4.39983 4.44513 4.48526 4.53634 4.63581 4.75316 4.77965 4.78365 4.85380 4.90179 4.93588 4.95819 5.03890 5.04853 5.05903 5.08959 5.09448 5.22440 5.26724 5.43919 5.48075 5.61439 5.62046 5.68912 5.88959 6.05934 6.17516 6.36764 6.77479 6.88908 7.34302 7.54428 8.90393 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018714 B = 0.003818 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.853274 B = 7331.625255 C = 8000.481861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.062 3.938 3 O -0.386 6.386 4 C 0.157 3.843 5 H 0.050 0.950 6 C -0.119 4.119 7 C 0.495 3.505 8 O -0.596 6.596 9 N -0.605 5.605 10 C 0.080 3.920 11 C 0.263 3.737 12 H 0.005 0.995 13 C -0.130 4.130 14 C -0.539 4.539 15 H 0.062 0.938 16 C 0.013 3.987 17 N -0.919 5.919 18 Si 0.966 3.034 19 H -0.261 1.261 20 H -0.284 1.284 21 H -0.277 1.277 22 C -0.165 4.165 23 C -0.156 4.156 24 C -0.096 4.096 25 C -0.120 4.120 26 C -0.086 4.086 27 H 0.089 0.911 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.027 0.973 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.015 0.985 40 H 0.264 0.736 41 H 0.122 0.878 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.070 0.930 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.999 -1.059 -22.314 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.015 4.015 3 O -0.305 6.305 4 C 0.098 3.902 5 H 0.068 0.932 6 C -0.158 4.158 7 C 0.284 3.716 8 O -0.478 6.478 9 N -0.336 5.336 10 C -0.062 4.062 11 C 0.160 3.840 12 H 0.023 0.977 13 C -0.189 4.189 14 C -0.577 4.577 15 H 0.080 0.920 16 C -0.186 4.186 17 N -0.558 5.558 18 Si 0.791 3.209 19 H -0.185 1.185 20 H -0.210 1.210 21 H -0.202 1.202 22 C -0.165 4.165 23 C -0.174 4.174 24 C -0.133 4.133 25 C -0.157 4.157 26 C -0.123 4.123 27 H 0.108 0.892 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.143 0.857 33 H 0.133 0.867 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.073 0.927 41 H 0.140 0.860 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.088 0.912 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.500 -1.388 -21.912 22.098 hybrid contribution 0.507 -0.411 1.422 1.565 sum 3.006 -1.799 -20.490 20.787 Atomic orbital electron populations 1.21703 0.92908 1.03142 1.02259 1.22458 0.96280 0.83482 0.99247 1.87866 1.20540 1.27254 1.94866 1.20362 0.81670 0.96730 0.91411 0.93219 1.21789 1.04134 1.00150 0.89751 1.21241 0.78600 0.82453 0.89292 1.90602 1.45233 1.32903 1.79027 1.48243 1.57722 1.17452 1.10158 1.21838 0.97406 0.86705 1.00262 1.18471 0.94061 0.94534 0.76887 0.97674 1.21853 0.96790 0.98413 1.01843 1.21569 0.93610 1.50868 0.91666 0.91963 1.25770 0.99140 0.94457 0.99231 1.70030 1.24558 1.50056 1.11167 0.85494 0.79122 0.79052 0.77254 1.18548 1.20966 1.20232 1.22403 0.99078 1.00128 0.94913 1.23459 0.97845 0.98550 0.97514 1.21371 1.02042 0.97282 0.92582 1.22506 0.97827 0.96808 0.98586 1.21228 0.99139 0.98092 0.93817 0.89196 0.93970 0.91155 0.92374 0.95438 0.85723 0.86744 0.91953 0.91317 0.89063 0.91497 0.93494 0.96554 0.92678 0.85970 0.89894 0.89949 0.90339 0.89667 0.91166 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 10.28 71.98 0.74 -2.88 16 2 C 0.06 1.83 6.46 71.98 0.46 2.29 16 3 O -0.39 -12.99 9.19 -135.19 -1.24 -14.23 16 4 C 0.16 4.70 2.05 29.85 0.06 4.76 16 5 H 0.05 1.68 7.52 -2.39 -0.02 1.66 16 6 C -0.12 -3.56 3.91 29.85 0.12 -3.44 16 7 C 0.49 21.32 7.55 87.66 0.66 21.98 16 8 O -0.60 -31.39 14.75 10.77 0.16 -31.23 16 9 N -0.60 -26.52 2.75 -826.80 -2.28 -28.80 16 10 C 0.08 2.58 9.24 127.77 1.18 3.76 16 11 C 0.26 14.19 2.63 44.25 0.12 14.31 16 12 H 0.01 0.34 6.90 -2.39 -0.02 0.33 16 13 C -0.13 -6.58 8.97 71.98 0.65 -5.93 16 14 C -0.54 -29.89 7.99 25.60 0.20 -29.68 16 15 H 0.06 3.32 7.33 -2.91 -0.02 3.30 16 16 C 0.01 0.75 5.30 84.65 0.45 1.20 16 17 N -0.92 -54.21 11.32 21.45 0.24 -53.97 16 18 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 19 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 22 C -0.16 -3.73 5.03 -15.86 -0.08 -3.81 16 23 C -0.16 -3.03 10.55 26.27 0.28 -2.75 16 24 C -0.10 -1.36 6.81 30.53 0.21 -1.15 16 25 C -0.12 -1.63 7.20 31.76 0.23 -1.40 16 26 C -0.09 -1.60 6.71 30.59 0.21 -1.40 16 27 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.03 0.93 8.08 -2.39 -0.02 0.91 16 32 H 0.12 3.05 7.40 -2.38 -0.02 3.03 16 33 H 0.11 2.99 7.78 -2.39 -0.02 2.97 16 34 H 0.06 1.75 8.14 -2.38 -0.02 1.74 16 35 H 0.07 2.37 7.02 -2.39 -0.02 2.35 16 36 H 0.09 2.20 6.44 -2.38 -0.02 2.19 16 37 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 38 H 0.05 2.14 7.67 -2.39 -0.02 2.12 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 41 H 0.12 2.33 8.06 -2.91 -0.02 2.30 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 46 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.07 1.31 7.82 -2.39 -0.02 1.29 16 Total: -1.00 -72.25 375.52 5.31 -66.94 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.92 Total: 19.90 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 5.48 Total: -4.16 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -2.03 Total: -82.77 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -1.08 Total: -45.46 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -72.25 5.31 -66.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073077540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.084 kcal (2) G-P(sol) polarization free energy of solvation -72.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds