Wall clock time and date at job start Tue Mar 31 2020 07:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 110.67894 * 2 1 4 4 C 1.54994 * 110.61841 * 237.03158 * 2 1 3 5 5 C 1.54809 * 102.09586 * 204.47393 * 4 2 1 6 6 C 1.54106 * 104.18563 * 20.88576 * 5 4 2 7 7 H 1.09003 * 109.87814 * 242.45913 * 6 5 4 8 8 C 1.52992 * 109.88043 * 121.45073 * 6 5 4 9 9 C 1.53006 * 109.47175 * 175.00060 * 8 6 5 10 10 C 1.50699 * 109.47032 * 180.02562 * 9 8 6 11 11 O 1.21280 * 120.00439 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99530 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99526 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47128 * 269.99537 * 13 12 10 15 15 H 1.07999 * 119.99988 * 0.02562 * 14 13 12 16 16 C 1.37885 * 120.00047 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99792 * 359.72305 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47021 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47081 * 119.99727 * 18 16 14 21 21 H 1.48501 * 109.47213 * 240.00099 * 18 16 14 22 22 C 1.46499 * 120.00151 * 359.97438 * 12 10 9 23 23 C 1.53006 * 109.47061 * 270.00315 * 22 12 10 24 24 C 1.52998 * 117.49724 * 243.74760 * 23 22 12 25 25 C 1.53002 * 117.49620 * 175.08975 * 23 22 12 26 26 O 1.43749 * 107.29385 * 2.02601 * 6 5 4 27 27 H 1.08997 * 109.47422 * 182.96274 * 1 2 3 28 28 H 1.08997 * 109.47312 * 302.96696 * 1 2 3 29 29 H 1.08996 * 109.47409 * 62.96468 * 1 2 3 30 30 H 1.09004 * 110.90514 * 86.27990 * 4 2 1 31 31 H 1.08994 * 110.94165 * 322.69154 * 4 2 1 32 32 H 1.08998 * 110.49011 * 262.21115 * 5 4 2 33 33 H 1.08998 * 110.60008 * 139.61150 * 5 4 2 34 34 H 1.08999 * 109.47030 * 55.00114 * 8 6 5 35 35 H 1.08999 * 109.47542 * 295.00087 * 8 6 5 36 36 H 1.08999 * 109.47098 * 60.00095 * 9 8 6 37 37 H 1.09007 * 109.46803 * 300.00051 * 9 8 6 38 38 H 1.09004 * 109.47268 * 149.99677 * 13 12 10 39 39 H 1.08997 * 109.47471 * 30.00084 * 13 12 10 40 40 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.47090 * 30.00493 * 22 12 10 42 42 H 1.08996 * 109.46935 * 150.00279 * 22 12 10 43 43 H 1.08996 * 115.54725 * 29.41863 * 23 22 12 44 44 H 1.09006 * 117.49996 * 0.02562 * 24 23 22 45 45 H 1.08994 * 117.50243 * 145.02190 * 24 23 22 46 46 H 1.08994 * 117.49359 * 214.97835 * 25 23 22 47 47 H 1.09002 * 117.49880 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0758 -0.7894 -1.2171 5 6 3.4794 -1.2168 -0.7235 6 6 3.3839 -1.1255 0.8119 7 1 4.0872 -0.3801 1.1833 8 6 3.6934 -2.4883 1.4343 9 6 3.7185 -2.3590 2.9587 10 6 4.0240 -3.7013 3.5718 11 8 4.2035 -4.6665 2.8598 12 7 4.0968 -3.8293 4.9115 13 6 4.3932 -5.1343 5.5075 14 6 3.1056 -5.8757 5.7594 15 1 2.1609 -5.4204 5.5009 16 6 3.1335 -7.1352 6.3198 17 7 4.2841 -7.6917 6.6295 18 14 1.5375 -8.0544 6.6313 19 1 0.3911 -7.2187 6.1921 20 1 1.5429 -9.3283 5.8683 21 1 1.4094 -8.3465 8.0817 22 6 3.8795 -2.6635 5.7717 23 6 5.2144 -1.9592 6.0229 24 6 5.7313 -1.9177 7.4623 25 6 5.1837 -0.6466 6.8085 26 8 2.0383 -0.7353 1.1338 27 1 -0.3634 -1.0262 0.0531 28 1 -0.3634 0.5592 0.8622 29 1 -0.3634 0.4671 -0.9153 30 1 2.1509 -0.1477 -2.0950 31 1 1.4551 -1.6606 -1.4264 32 1 4.2406 -0.5332 -1.0997 33 1 3.6997 -2.2387 -1.0319 34 1 4.6649 -2.8360 1.0831 35 1 2.9245 -3.2039 1.1431 36 1 2.7470 -2.0113 3.3099 37 1 4.4876 -1.6434 3.2499 38 1 4.9208 -4.9916 6.4507 39 1 5.0176 -5.7117 4.8258 40 1 4.3037 -8.5776 7.0241 41 1 3.1914 -1.9742 5.2823 42 1 3.4550 -2.9872 6.7219 43 1 5.9519 -2.0515 5.2257 44 1 5.1206 -2.3926 8.2303 45 1 6.8089 -1.9823 7.6122 46 1 5.9013 0.1244 6.5284 47 1 4.2125 -0.2846 7.1460 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075198301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:17 Heat of formation + Delta-G solvation = -76.634723 kcal Electronic energy + Delta-G solvation = -24395.851964 eV Core-core repulsion = 20964.749916 eV Total energy + Delta-G solvation = -3431.102049 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.80543 -38.97850 -37.09627 -34.40041 -33.68173 -32.47264 -32.32911 -30.64849 -28.02549 -26.59133 -25.64707 -23.48059 -22.16794 -21.98906 -21.34268 -20.85968 -20.56227 -18.24893 -16.67817 -16.44201 -16.34640 -15.95349 -15.56176 -14.92351 -14.74658 -14.56729 -14.12690 -14.01810 -13.87405 -13.14298 -12.91661 -12.64795 -12.47977 -12.24900 -12.21137 -12.00499 -11.75651 -11.52266 -11.38299 -11.31594 -11.18194 -11.07278 -10.89486 -10.85426 -10.74755 -10.57471 -10.52283 -10.23089 -10.06818 -9.67373 -9.63628 -9.53348 -8.76084 -8.38315 -7.58063 -5.99028 -4.03097 3.32912 3.40242 3.44458 3.55430 3.70818 3.88352 4.13453 4.44617 4.48942 4.56344 4.77492 4.81279 4.98816 5.03935 5.13757 5.13970 5.22126 5.28760 5.35116 5.37325 5.40793 5.49998 5.56092 5.64895 5.68998 5.72456 5.77020 5.79859 5.84197 5.87648 5.99159 6.01040 6.05693 6.09360 6.12136 6.31148 6.34166 6.49272 6.53101 6.94909 7.17469 7.52693 7.64441 7.98508 8.30792 8.53070 8.97547 9.20642 9.61921 11.09033 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.012248 B = 0.004090 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.613186 B = 6844.058492 C = 8136.670404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 H 0.066 0.934 4 C -0.151 4.151 5 C -0.153 4.153 6 C 0.078 3.922 7 H 0.067 0.933 8 C -0.100 4.100 9 C -0.136 4.136 10 C 0.504 3.496 11 O -0.545 6.545 12 N -0.596 5.596 13 C 0.247 3.753 14 C -0.523 4.523 15 H 0.057 0.943 16 C 0.060 3.940 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.142 3.858 23 C -0.165 4.165 24 C -0.175 4.175 25 C -0.181 4.181 26 O -0.367 6.367 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.032 0.968 39 H 0.041 0.959 40 H 0.262 0.738 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.554 19.247 -9.736 21.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.084 0.916 4 C -0.189 4.189 5 C -0.191 4.191 6 C 0.020 3.980 7 H 0.084 0.916 8 C -0.138 4.138 9 C -0.176 4.176 10 C 0.292 3.708 11 O -0.423 6.423 12 N -0.326 5.326 13 C 0.128 3.872 14 C -0.562 4.562 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.535 5.535 18 Si 0.724 3.276 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.210 1.210 22 C 0.018 3.982 23 C -0.185 4.185 24 C -0.212 4.212 25 C -0.219 4.219 26 O -0.287 6.287 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.119 0.881 44 H 0.115 0.885 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.492 18.484 -9.825 20.987 hybrid contribution -0.616 -0.484 0.181 0.804 sum -2.107 18.000 -9.644 20.530 Atomic orbital electron populations 1.21767 0.93353 1.03157 1.02122 1.23087 0.95119 0.95130 0.85395 0.91593 1.23173 0.96555 1.00806 0.98325 1.23000 0.97443 1.03109 0.95543 1.22801 0.84584 0.96781 0.93833 0.91550 1.21525 1.03179 0.94971 0.94099 1.21662 1.03476 0.96327 0.96172 1.20446 0.77636 0.90145 0.82618 1.90650 1.50329 1.40759 1.60593 1.48192 1.68719 1.10827 1.04906 1.19243 0.96635 0.77845 0.93519 1.21505 0.93079 1.01218 1.40421 0.92470 1.24931 0.96401 0.97166 0.95637 1.69953 1.24390 1.15985 1.43129 0.86470 0.83642 0.79853 0.77628 1.19806 1.20916 1.21016 1.21010 0.93557 0.87332 0.96318 1.22895 1.00492 0.99588 0.95478 1.23007 1.01030 1.00982 0.96182 1.22925 1.02639 0.91146 1.05200 1.88939 1.27888 1.73272 1.38563 0.91605 0.91904 0.91406 0.90595 0.90379 0.90868 0.90010 0.90227 0.90465 0.89030 0.89918 0.95031 0.94059 0.92878 0.91036 0.89982 0.88053 0.88475 0.89230 0.89244 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.66 37.16 0.36 -0.91 16 2 C 0.07 0.69 3.98 -25.68 -0.10 0.59 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.15 -1.33 6.59 -24.73 -0.16 -1.49 16 5 C -0.15 -1.47 6.64 -25.20 -0.17 -1.64 16 6 C 0.08 0.91 3.41 -26.16 -0.09 0.82 16 7 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 8 C -0.10 -1.45 3.99 -26.73 -0.11 -1.56 16 9 C -0.14 -2.15 4.17 -27.88 -0.12 -2.26 16 10 C 0.50 10.80 7.67 -10.98 -0.08 10.71 16 11 O -0.55 -14.03 15.56 5.56 0.09 -13.94 16 12 N -0.60 -12.94 2.46 -175.06 -0.43 -13.37 16 13 C 0.25 6.61 5.16 -5.20 -0.03 6.58 16 14 C -0.52 -15.19 9.39 -34.44 -0.32 -15.52 16 15 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 18 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 19 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.14 2.41 5.49 -4.04 -0.02 2.39 16 23 C -0.17 -2.40 5.94 -90.62 -0.54 -2.93 16 24 C -0.18 -2.36 10.18 -26.69 -0.27 -2.63 16 25 C -0.18 -2.10 10.25 -26.69 -0.27 -2.37 16 26 O -0.37 -4.77 10.54 -35.23 -0.37 -5.15 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.81 7.70 -51.93 -0.40 0.41 16 34 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 35 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 36 H 0.09 1.42 7.17 -51.93 -0.37 1.05 16 37 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 38 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 39 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 41 H 0.07 1.06 6.44 -51.93 -0.33 0.72 16 42 H 0.08 1.46 7.81 -51.93 -0.41 1.05 16 43 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 44 H 0.10 1.36 8.03 -51.93 -0.42 0.94 16 45 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -33.51 381.29 -9.88 -43.39 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -8.61 Total: 0.92 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -2.02 Total: -8.56 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.31 Total: -39.70 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.28 Total: -19.09 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.51 -9.88 -43.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075198301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.240 kcal (2) G-P(sol) polarization free energy of solvation -33.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds