Wall clock time and date at job start Tue Mar 31 2020 07:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 110.67894 * 2 1 4 4 C 1.54994 * 110.61841 * 237.03158 * 2 1 3 5 5 C 1.54809 * 102.09586 * 204.47393 * 4 2 1 6 6 C 1.54106 * 104.18563 * 20.88576 * 5 4 2 7 7 H 1.09003 * 109.87814 * 242.45913 * 6 5 4 8 8 C 1.52992 * 109.88043 * 121.45073 * 6 5 4 9 9 C 1.53006 * 109.47175 * 175.00060 * 8 6 5 10 10 C 1.50699 * 109.47032 * 180.02562 * 9 8 6 11 11 O 1.21280 * 120.00439 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99530 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99526 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47128 * 269.99537 * 13 12 10 15 15 H 1.07999 * 119.99988 * 0.02562 * 14 13 12 16 16 C 1.37885 * 120.00047 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99792 * 359.72305 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47021 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47081 * 119.99727 * 18 16 14 21 21 H 1.48501 * 109.47213 * 240.00099 * 18 16 14 22 22 C 1.46499 * 120.00151 * 359.97438 * 12 10 9 23 23 C 1.53006 * 109.47061 * 270.00315 * 22 12 10 24 24 C 1.52998 * 117.49724 * 243.74760 * 23 22 12 25 25 C 1.53002 * 117.49620 * 175.08975 * 23 22 12 26 26 O 1.43749 * 107.29385 * 2.02601 * 6 5 4 27 27 H 1.08997 * 109.47422 * 182.96274 * 1 2 3 28 28 H 1.08997 * 109.47312 * 302.96696 * 1 2 3 29 29 H 1.08996 * 109.47409 * 62.96468 * 1 2 3 30 30 H 1.09004 * 110.90514 * 86.27990 * 4 2 1 31 31 H 1.08994 * 110.94165 * 322.69154 * 4 2 1 32 32 H 1.08998 * 110.49011 * 262.21115 * 5 4 2 33 33 H 1.08998 * 110.60008 * 139.61150 * 5 4 2 34 34 H 1.08999 * 109.47030 * 55.00114 * 8 6 5 35 35 H 1.08999 * 109.47542 * 295.00087 * 8 6 5 36 36 H 1.08999 * 109.47098 * 60.00095 * 9 8 6 37 37 H 1.09007 * 109.46803 * 300.00051 * 9 8 6 38 38 H 1.09004 * 109.47268 * 149.99677 * 13 12 10 39 39 H 1.08997 * 109.47471 * 30.00084 * 13 12 10 40 40 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.47090 * 30.00493 * 22 12 10 42 42 H 1.08996 * 109.46935 * 150.00279 * 22 12 10 43 43 H 1.08996 * 115.54725 * 29.41863 * 23 22 12 44 44 H 1.09006 * 117.49996 * 0.02562 * 24 23 22 45 45 H 1.08994 * 117.50243 * 145.02190 * 24 23 22 46 46 H 1.08994 * 117.49359 * 214.97835 * 25 23 22 47 47 H 1.09002 * 117.49880 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0758 -0.7894 -1.2171 5 6 3.4794 -1.2168 -0.7235 6 6 3.3839 -1.1255 0.8119 7 1 4.0872 -0.3801 1.1833 8 6 3.6934 -2.4883 1.4343 9 6 3.7185 -2.3590 2.9587 10 6 4.0240 -3.7013 3.5718 11 8 4.2035 -4.6665 2.8598 12 7 4.0968 -3.8293 4.9115 13 6 4.3932 -5.1343 5.5075 14 6 3.1056 -5.8757 5.7594 15 1 2.1609 -5.4204 5.5009 16 6 3.1335 -7.1352 6.3198 17 7 4.2841 -7.6917 6.6295 18 14 1.5375 -8.0544 6.6313 19 1 0.3911 -7.2187 6.1921 20 1 1.5429 -9.3283 5.8683 21 1 1.4094 -8.3465 8.0817 22 6 3.8795 -2.6635 5.7717 23 6 5.2144 -1.9592 6.0229 24 6 5.7313 -1.9177 7.4623 25 6 5.1837 -0.6466 6.8085 26 8 2.0383 -0.7353 1.1338 27 1 -0.3634 -1.0262 0.0531 28 1 -0.3634 0.5592 0.8622 29 1 -0.3634 0.4671 -0.9153 30 1 2.1509 -0.1477 -2.0950 31 1 1.4551 -1.6606 -1.4264 32 1 4.2406 -0.5332 -1.0997 33 1 3.6997 -2.2387 -1.0319 34 1 4.6649 -2.8360 1.0831 35 1 2.9245 -3.2039 1.1431 36 1 2.7470 -2.0113 3.3099 37 1 4.4876 -1.6434 3.2499 38 1 4.9208 -4.9916 6.4507 39 1 5.0176 -5.7117 4.8258 40 1 4.3037 -8.5776 7.0241 41 1 3.1914 -1.9742 5.2823 42 1 3.4550 -2.9872 6.7219 43 1 5.9519 -2.0515 5.2257 44 1 5.1206 -2.3926 8.2303 45 1 6.8089 -1.9823 7.6122 46 1 5.9013 0.1244 6.5284 47 1 4.2125 -0.2846 7.1460 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075198301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:16 Heat of formation + Delta-G solvation = -96.139264 kcal Electronic energy + Delta-G solvation = -24396.697745 eV Core-core repulsion = 20964.749916 eV Total energy + Delta-G solvation = -3431.947829 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.97936 -40.32042 -38.37145 -36.15281 -34.90699 -34.52342 -33.13102 -31.68591 -29.86148 -27.83952 -27.16135 -25.05561 -23.42550 -23.15310 -22.14208 -21.84720 -21.73508 -19.87332 -18.64505 -17.86572 -17.53453 -17.18427 -17.03302 -16.29277 -16.22981 -15.78555 -15.67394 -15.05233 -14.73429 -14.50781 -14.37632 -13.91582 -13.84374 -13.60972 -13.40939 -13.32092 -12.99065 -12.89789 -12.70092 -12.61043 -12.56195 -12.49489 -12.29018 -12.24761 -12.04577 -11.74989 -11.69838 -11.66303 -11.44532 -11.25345 -10.81560 -10.65379 -10.55448 -10.49394 -9.43625 -8.23517 -6.38402 1.33950 1.36519 1.48591 1.85141 2.28526 2.43493 2.90869 2.97783 3.05637 3.56772 3.69061 3.83710 3.94760 3.99530 4.03883 4.05752 4.17911 4.19951 4.32692 4.42054 4.49113 4.51911 4.56307 4.65247 4.71266 4.74875 4.80857 4.85474 4.89972 4.96443 4.98995 5.04526 5.08219 5.14081 5.19305 5.23451 5.25423 5.30318 5.31455 5.34350 5.35120 5.57518 5.86265 6.06408 6.13065 6.69162 6.80854 7.27385 7.49953 8.83761 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.012248 B = 0.004090 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.613186 B = 6844.058492 C = 8136.670404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.063 3.937 3 H 0.084 0.916 4 C -0.148 4.148 5 C -0.153 4.153 6 C 0.082 3.918 7 H 0.087 0.913 8 C -0.096 4.096 9 C -0.118 4.118 10 C 0.493 3.507 11 O -0.600 6.600 12 N -0.600 5.600 13 C 0.265 3.735 14 C -0.543 4.543 15 H 0.050 0.950 16 C 0.008 3.992 17 N -0.928 5.928 18 Si 0.967 3.033 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.267 1.267 22 C 0.141 3.859 23 C -0.184 4.184 24 C -0.190 4.190 25 C -0.142 4.142 26 O -0.394 6.394 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.020 0.980 39 H -0.006 1.006 40 H 0.267 0.733 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.113 0.887 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.501 22.206 -10.048 24.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.006 3.994 3 H 0.102 0.898 4 C -0.185 4.185 5 C -0.191 4.191 6 C 0.024 3.976 7 H 0.104 0.896 8 C -0.135 4.135 9 C -0.157 4.157 10 C 0.283 3.717 11 O -0.482 6.482 12 N -0.330 5.330 13 C 0.144 3.856 14 C -0.582 4.582 15 H 0.068 0.932 16 C -0.191 4.191 17 N -0.567 5.567 18 Si 0.791 3.209 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.192 1.192 22 C 0.018 3.982 23 C -0.203 4.203 24 C -0.227 4.227 25 C -0.179 4.179 26 O -0.315 6.315 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.119 0.881 37 H 0.133 0.867 38 H 0.038 0.962 39 H 0.012 0.988 40 H 0.076 0.924 41 H 0.117 0.883 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.105 0.895 45 H 0.113 0.887 46 H 0.132 0.868 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.444 21.497 -10.119 23.885 hybrid contribution -0.291 -1.411 0.290 1.469 sum -2.734 20.087 -9.829 22.529 Atomic orbital electron populations 1.21794 0.92875 1.02350 1.03310 1.23341 0.95628 0.95725 0.84687 0.89792 1.23181 0.95641 1.00762 0.98960 1.23019 0.98739 1.03248 0.94075 1.22778 0.84756 0.94999 0.95041 0.89555 1.21485 1.02004 0.96548 0.93418 1.21617 1.04677 0.92922 0.96496 1.21522 0.76238 0.91818 0.82090 1.90614 1.52676 1.43132 1.61756 1.48209 1.68415 1.10508 1.05884 1.18659 0.95118 0.80016 0.91841 1.21744 0.93362 1.02135 1.40944 0.93164 1.25856 1.00164 0.97971 0.95074 1.70066 1.26673 1.16534 1.43466 0.85375 0.79044 0.78143 0.78295 1.19292 1.20623 1.19183 1.21235 0.95798 0.86010 0.95110 1.22703 0.99052 1.02557 0.95992 1.23074 1.01373 1.03102 0.95191 1.23039 1.03640 0.89940 1.01308 1.88904 1.28418 1.73917 1.40241 0.93245 0.92043 0.89060 0.88035 0.91515 0.88477 0.91084 0.90690 0.93465 0.88146 0.86729 0.96167 0.98763 0.92398 0.88269 0.91280 0.88635 0.89521 0.88714 0.86837 0.87300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.66 71.98 0.69 -1.57 16 2 C 0.06 1.09 3.98 31.27 0.12 1.21 16 3 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 4 C -0.15 -2.27 6.59 31.89 0.21 -2.06 16 5 C -0.15 -2.64 6.64 31.59 0.21 -2.43 16 6 C 0.08 1.77 3.41 30.97 0.11 1.87 16 7 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 8 C -0.10 -2.81 3.99 30.59 0.12 -2.69 16 9 C -0.12 -3.62 4.17 29.85 0.12 -3.50 16 10 C 0.49 21.84 7.67 87.66 0.67 22.52 16 11 O -0.60 -32.71 15.56 -3.03 -0.05 -32.76 16 12 N -0.60 -26.99 2.46 -826.16 -2.03 -29.02 16 13 C 0.27 15.01 5.16 85.63 0.44 15.46 16 14 C -0.54 -32.71 9.39 25.60 0.24 -32.47 16 15 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 16 C 0.01 0.49 5.46 84.66 0.46 0.95 16 17 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 18 Si 0.97 46.39 29.54 68.60 2.03 48.41 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 22 C 0.14 4.73 5.49 86.38 0.47 5.21 16 23 C -0.18 -5.10 5.94 -10.79 -0.06 -5.17 16 24 C -0.19 -4.94 10.18 30.62 0.31 -4.62 16 25 C -0.14 -2.80 10.25 30.62 0.31 -2.49 16 26 O -0.39 -9.58 10.54 -148.98 -1.57 -11.16 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.07 1.17 8.06 -2.39 -0.02 1.15 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.37 7.70 -2.39 -0.02 1.35 16 34 H 0.07 2.22 8.10 -2.39 -0.02 2.20 16 35 H 0.05 1.64 8.10 -2.39 -0.02 1.62 16 36 H 0.10 2.97 7.17 -2.39 -0.02 2.95 16 37 H 0.11 2.82 8.04 -2.38 -0.02 2.80 16 38 H 0.02 1.17 8.07 -2.38 -0.02 1.15 16 39 H -0.01 -0.38 7.42 -2.39 -0.02 -0.39 16 40 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 41 H 0.10 2.74 6.44 -2.39 -0.02 2.72 16 42 H 0.07 2.48 7.81 -2.39 -0.02 2.46 16 43 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 44 H 0.09 2.41 8.03 -2.38 -0.02 2.39 16 45 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.11 1.77 8.14 -2.39 -0.02 1.76 16 47 H 0.11 1.86 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -77.02 381.29 4.02 -73.01 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.91 Total: 18.70 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 4.44 Total: -9.79 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -1.74 Total: -86.41 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -1.62 Total: -43.91 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -77.02 4.02 -73.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075198301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.134 kcal (2) G-P(sol) polarization free energy of solvation -77.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds