Wall clock time and date at job start Tue Mar 31 2020 07:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.89705 * 2 1 4 4 C 1.54380 * 109.83249 * 239.06033 * 2 1 3 5 5 C 1.55312 * 102.25056 * 219.13160 * 4 2 1 6 6 C 1.54951 * 100.94225 * 34.13333 * 5 4 2 7 7 H 1.08995 * 110.30511 * 82.46801 * 6 5 4 8 8 C 1.53001 * 110.39210 * 204.59612 * 6 5 4 9 9 C 1.52994 * 109.47129 * 182.21644 * 8 6 5 10 10 C 1.50695 * 109.47224 * 180.02562 * 9 8 6 11 11 O 1.21282 * 120.00195 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99936 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99617 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.47232 * 89.99560 * 13 12 10 15 15 H 1.07996 * 119.99721 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00318 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99878 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00014 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47205 * 90.00907 * 18 16 14 20 20 H 1.48506 * 109.46769 * 210.00389 * 18 16 14 21 21 H 1.48498 * 109.47214 * 330.00361 * 18 16 14 22 22 C 1.46498 * 119.99941 * 359.97438 * 12 10 9 23 23 C 1.52992 * 109.47106 * 90.00386 * 22 12 10 24 24 C 1.53005 * 117.50043 * 243.62133 * 23 22 12 25 25 C 1.53002 * 117.49810 * 174.99763 * 23 22 12 26 26 O 1.43245 * 109.82647 * 120.92633 * 2 1 3 27 27 H 1.09003 * 109.47160 * 300.52812 * 1 2 3 28 28 H 1.09006 * 109.46508 * 60.52782 * 1 2 3 29 29 H 1.08999 * 109.46794 * 180.52280 * 1 2 3 30 30 H 1.08999 * 110.84912 * 337.32185 * 4 2 1 31 31 H 1.08999 * 110.84558 * 100.94148 * 4 2 1 32 32 H 1.09000 * 111.12606 * 276.21364 * 5 4 2 33 33 H 1.08998 * 111.12201 * 152.05620 * 5 4 2 34 34 H 1.09000 * 109.46893 * 302.21838 * 8 6 5 35 35 H 1.08996 * 109.47195 * 62.21462 * 8 6 5 36 36 H 1.09003 * 109.46930 * 300.00113 * 9 8 6 37 37 H 1.09005 * 109.47289 * 59.99639 * 9 8 6 38 38 H 1.08998 * 109.47087 * 209.99393 * 13 12 10 39 39 H 1.09001 * 109.47513 * 329.99695 * 13 12 10 40 40 H 0.96994 * 120.00044 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.46798 * 210.00609 * 22 12 10 42 42 H 1.08997 * 109.47145 * 329.99951 * 22 12 10 43 43 H 1.08999 * 115.54960 * 29.32978 * 23 22 12 44 44 H 1.08997 * 117.49608 * 359.97438 * 24 23 22 45 45 H 1.09000 * 117.50037 * 145.02132 * 24 23 22 46 46 H 1.09005 * 117.50125 * 214.98089 * 25 23 22 47 47 H 1.09001 * 117.50150 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0250 0.0000 4 6 2.0538 -0.7466 -1.2456 5 6 3.2731 -1.5222 -0.6764 6 6 2.7747 -1.8444 0.7549 7 1 2.1401 -2.7304 0.7440 8 6 3.9611 -2.0535 1.6981 9 6 3.4466 -2.4240 3.0905 10 6 4.6151 -2.6294 4.0196 11 8 5.7480 -2.4932 3.6086 12 7 4.4012 -2.9654 5.3073 13 6 5.5373 -3.1655 6.2103 14 6 5.8889 -1.8583 6.8726 15 1 5.3226 -0.9676 6.6440 16 6 6.9331 -1.7996 7.7712 17 7 7.6225 -2.8844 8.0499 18 14 7.3684 -0.1794 8.5926 19 1 6.6004 -0.0429 9.8562 20 1 8.8228 -0.1513 8.8918 21 1 7.0284 0.9440 7.6828 22 6 3.0328 -3.1304 5.8037 23 6 2.5951 -4.5846 5.6185 24 6 1.4236 -4.8547 4.6721 25 6 1.2324 -4.9896 6.1842 26 8 2.0159 -0.6926 1.1560 27 1 -0.3633 0.5220 0.8852 28 1 -0.3632 0.5057 -0.8948 29 1 -0.3633 -1.0276 0.0094 30 1 1.3013 -1.4351 -1.6302 31 1 2.3673 -0.0427 -2.0165 32 1 4.1622 -0.8921 -0.6503 33 1 3.4573 -2.4350 -1.2430 34 1 4.5906 -2.8578 1.3174 35 1 4.5435 -1.1341 1.7588 36 1 2.8171 -1.6197 3.4711 37 1 2.8641 -3.3434 3.0298 38 1 5.2713 -3.8986 6.9719 39 1 6.3942 -3.5268 5.6418 40 1 8.3572 -2.8430 8.6818 41 1 2.9967 -2.8719 6.8620 42 1 2.3628 -2.4755 5.2467 43 1 3.3947 -5.3244 5.6540 44 1 0.9645 -3.9963 4.1818 45 1 1.4524 -5.7724 4.0846 46 1 1.1354 -5.9961 6.5914 47 1 0.6479 -4.2201 6.6886 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075198303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:23 Heat of formation + Delta-G solvation = -77.140381 kcal Electronic energy + Delta-G solvation = -24506.829519 eV Core-core repulsion = 21075.705543 eV Total energy + Delta-G solvation = -3431.123976 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.83787 -39.01636 -37.11005 -34.45373 -33.66551 -32.45993 -32.36196 -30.61316 -27.97972 -26.69059 -25.65956 -23.52803 -22.25139 -22.01727 -21.62058 -20.61001 -20.38315 -18.20034 -17.09688 -16.62147 -16.39899 -15.78651 -15.30763 -15.01256 -14.66987 -14.42231 -14.19495 -13.96757 -13.64904 -13.45764 -13.06223 -12.76683 -12.51564 -12.34297 -12.12593 -11.93982 -11.82077 -11.56936 -11.39602 -11.33858 -11.17247 -11.04175 -10.95685 -10.86075 -10.75503 -10.61461 -10.50548 -10.27230 -10.03191 -9.74590 -9.55283 -9.53676 -8.74542 -8.38252 -7.58215 -5.99064 -4.03259 3.33668 3.39965 3.44621 3.56676 3.68261 3.86967 4.09309 4.34833 4.49274 4.58015 4.64481 4.92346 4.98400 5.05703 5.09225 5.10175 5.14655 5.27686 5.34947 5.36564 5.41029 5.48604 5.54896 5.57880 5.63070 5.67887 5.72916 5.74864 5.87555 5.91077 5.96114 6.00381 6.02674 6.06038 6.17003 6.22763 6.34741 6.49599 6.53399 7.05855 7.15404 7.51535 7.64007 7.98282 8.30357 8.53144 8.97214 9.21277 9.61826 11.09020 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013570 B = 0.003994 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.924765 B = 7008.658974 C = 8126.599474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.074 3.926 3 H 0.077 0.923 4 C -0.152 4.152 5 C -0.153 4.153 6 C 0.082 3.918 7 H 0.068 0.932 8 C -0.100 4.100 9 C -0.137 4.137 10 C 0.507 3.493 11 O -0.546 6.546 12 N -0.597 5.597 13 C 0.246 3.754 14 C -0.524 4.524 15 H 0.057 0.943 16 C 0.060 3.940 17 N -0.896 5.896 18 Si 0.897 3.103 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.143 3.857 23 C -0.164 4.164 24 C -0.185 4.185 25 C -0.177 4.177 26 O -0.371 6.371 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.031 0.969 39 H 0.042 0.958 40 H 0.262 0.738 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.430 -0.176 -15.245 22.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.016 3.984 3 H 0.095 0.905 4 C -0.189 4.189 5 C -0.190 4.190 6 C 0.024 3.976 7 H 0.086 0.914 8 C -0.138 4.138 9 C -0.177 4.177 10 C 0.294 3.706 11 O -0.424 6.424 12 N -0.327 5.327 13 C 0.127 3.873 14 C -0.563 4.563 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.535 5.535 18 Si 0.725 3.275 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.199 1.199 22 C 0.018 3.982 23 C -0.183 4.183 24 C -0.222 4.222 25 C -0.215 4.215 26 O -0.291 6.291 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.125 0.875 44 H 0.112 0.888 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.686 -0.105 -15.118 21.786 hybrid contribution 0.203 0.722 0.404 0.852 sum -15.483 0.617 -14.714 21.369 Atomic orbital electron populations 1.22140 0.95183 1.02431 1.02128 1.22686 0.94088 0.96437 0.85160 0.90532 1.23186 0.97986 0.99720 0.98052 1.23309 0.98541 1.01161 0.96009 1.23048 0.92469 0.88910 0.93139 0.91386 1.21470 0.95693 1.03378 0.93257 1.21669 0.97869 1.03069 0.95102 1.20422 0.90244 0.77232 0.82721 1.90649 1.24468 1.51334 1.75923 1.48181 1.07250 1.67320 1.09992 1.19249 0.83515 0.96774 0.87792 1.21460 1.15582 0.95350 1.23888 0.92495 1.24931 0.95857 0.96624 0.96716 1.69937 1.20989 1.27670 1.34915 0.86514 0.77585 0.83935 0.79499 1.20672 1.21130 1.19897 1.20998 0.83899 0.92338 1.00958 1.22938 0.91849 0.99535 1.03985 1.23047 1.03361 1.03003 0.92807 1.22893 1.00056 1.02471 0.96058 1.88482 1.70543 1.40440 1.29670 0.91921 0.91834 0.92292 0.90596 0.90285 0.90035 0.89986 0.90146 0.90506 0.89169 0.89642 0.95114 0.93988 0.92806 0.89676 0.91302 0.87490 0.88811 0.89282 0.89082 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.44 37.16 0.35 -0.97 16 2 C 0.07 0.73 4.16 -26.01 -0.11 0.62 16 3 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 4 C -0.15 -1.22 6.54 -24.78 -0.16 -1.38 16 5 C -0.15 -1.44 6.57 -24.48 -0.16 -1.60 16 6 C 0.08 0.95 3.43 -25.70 -0.09 0.86 16 7 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 8 C -0.10 -1.45 4.25 -26.73 -0.11 -1.57 16 9 C -0.14 -2.16 4.17 -27.89 -0.12 -2.28 16 10 C 0.51 10.86 7.67 -10.98 -0.08 10.77 16 11 O -0.55 -14.05 15.56 5.56 0.09 -13.96 16 12 N -0.60 -12.94 2.46 -175.07 -0.43 -13.37 16 13 C 0.25 6.57 5.16 -5.19 -0.03 6.54 16 14 C -0.52 -15.20 9.39 -34.44 -0.32 -15.52 16 15 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 18 Si 0.90 22.31 29.54 -169.99 -5.02 17.28 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 22 C 0.14 2.41 5.49 -4.05 -0.02 2.39 16 23 C -0.16 -2.36 5.95 -90.62 -0.54 -2.90 16 24 C -0.19 -2.13 9.18 -26.73 -0.25 -2.37 16 25 C -0.18 -2.07 10.25 -26.73 -0.27 -2.34 16 26 O -0.37 -4.79 10.35 -35.23 -0.36 -5.15 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.54 7.85 -51.93 -0.41 0.13 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 35 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 36 H 0.09 1.40 7.17 -51.93 -0.37 1.03 16 37 H 0.09 1.17 6.84 -51.93 -0.36 0.81 16 38 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 39 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.08 1.51 8.07 -51.93 -0.42 1.09 16 42 H 0.07 1.02 6.18 -51.93 -0.32 0.70 16 43 H 0.11 1.73 8.14 -51.93 -0.42 1.30 16 44 H 0.09 1.00 7.87 -51.93 -0.41 0.59 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 379.02 15.07 5.71 5.71 Total: -1.00 -33.37 379.02 -9.83 -43.20 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -8.54 Total: 0.72 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -2.01 Total: -8.09 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.31 Total: -39.71 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.28 Total: -19.11 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.37 -9.83 -43.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075198303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.938 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds