Wall clock time and date at job start Tue Mar 31 2020 07:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.89705 * 2 1 4 4 C 1.54380 * 109.83249 * 239.06033 * 2 1 3 5 5 C 1.55312 * 102.25056 * 219.13160 * 4 2 1 6 6 C 1.54951 * 100.94225 * 34.13333 * 5 4 2 7 7 H 1.08995 * 110.30511 * 82.46801 * 6 5 4 8 8 C 1.53001 * 110.39210 * 204.59612 * 6 5 4 9 9 C 1.52994 * 109.47129 * 182.21644 * 8 6 5 10 10 C 1.50695 * 109.47224 * 180.02562 * 9 8 6 11 11 O 1.21282 * 120.00195 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99936 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99617 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.47232 * 89.99560 * 13 12 10 15 15 H 1.07996 * 119.99721 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00318 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99878 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00014 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47205 * 90.00907 * 18 16 14 20 20 H 1.48506 * 109.46769 * 210.00389 * 18 16 14 21 21 H 1.48498 * 109.47214 * 330.00361 * 18 16 14 22 22 C 1.46498 * 119.99941 * 359.97438 * 12 10 9 23 23 C 1.52992 * 109.47106 * 90.00386 * 22 12 10 24 24 C 1.53005 * 117.50043 * 243.62133 * 23 22 12 25 25 C 1.53002 * 117.49810 * 174.99763 * 23 22 12 26 26 O 1.43245 * 109.82647 * 120.92633 * 2 1 3 27 27 H 1.09003 * 109.47160 * 300.52812 * 1 2 3 28 28 H 1.09006 * 109.46508 * 60.52782 * 1 2 3 29 29 H 1.08999 * 109.46794 * 180.52280 * 1 2 3 30 30 H 1.08999 * 110.84912 * 337.32185 * 4 2 1 31 31 H 1.08999 * 110.84558 * 100.94148 * 4 2 1 32 32 H 1.09000 * 111.12606 * 276.21364 * 5 4 2 33 33 H 1.08998 * 111.12201 * 152.05620 * 5 4 2 34 34 H 1.09000 * 109.46893 * 302.21838 * 8 6 5 35 35 H 1.08996 * 109.47195 * 62.21462 * 8 6 5 36 36 H 1.09003 * 109.46930 * 300.00113 * 9 8 6 37 37 H 1.09005 * 109.47289 * 59.99639 * 9 8 6 38 38 H 1.08998 * 109.47087 * 209.99393 * 13 12 10 39 39 H 1.09001 * 109.47513 * 329.99695 * 13 12 10 40 40 H 0.96994 * 120.00044 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.46798 * 210.00609 * 22 12 10 42 42 H 1.08997 * 109.47145 * 329.99951 * 22 12 10 43 43 H 1.08999 * 115.54960 * 29.32978 * 23 22 12 44 44 H 1.08997 * 117.49608 * 359.97438 * 24 23 22 45 45 H 1.09000 * 117.50037 * 145.02132 * 24 23 22 46 46 H 1.09005 * 117.50125 * 214.98089 * 25 23 22 47 47 H 1.09001 * 117.50150 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0250 0.0000 4 6 2.0538 -0.7466 -1.2456 5 6 3.2731 -1.5222 -0.6764 6 6 2.7747 -1.8444 0.7549 7 1 2.1401 -2.7304 0.7440 8 6 3.9611 -2.0535 1.6981 9 6 3.4466 -2.4240 3.0905 10 6 4.6151 -2.6294 4.0196 11 8 5.7480 -2.4932 3.6086 12 7 4.4012 -2.9654 5.3073 13 6 5.5373 -3.1655 6.2103 14 6 5.8889 -1.8583 6.8726 15 1 5.3226 -0.9676 6.6440 16 6 6.9331 -1.7996 7.7712 17 7 7.6225 -2.8844 8.0499 18 14 7.3684 -0.1794 8.5926 19 1 6.6004 -0.0429 9.8562 20 1 8.8228 -0.1513 8.8918 21 1 7.0284 0.9440 7.6828 22 6 3.0328 -3.1304 5.8037 23 6 2.5951 -4.5846 5.6185 24 6 1.4236 -4.8547 4.6721 25 6 1.2324 -4.9896 6.1842 26 8 2.0159 -0.6926 1.1560 27 1 -0.3633 0.5220 0.8852 28 1 -0.3632 0.5057 -0.8948 29 1 -0.3633 -1.0276 0.0094 30 1 1.3013 -1.4351 -1.6302 31 1 2.3673 -0.0427 -2.0165 32 1 4.1622 -0.8921 -0.6503 33 1 3.4573 -2.4350 -1.2430 34 1 4.5906 -2.8578 1.3174 35 1 4.5435 -1.1341 1.7588 36 1 2.8171 -1.6197 3.4711 37 1 2.8641 -3.3434 3.0298 38 1 5.2713 -3.8986 6.9719 39 1 6.3942 -3.5268 5.6418 40 1 8.3572 -2.8430 8.6818 41 1 2.9967 -2.8719 6.8620 42 1 2.3628 -2.4755 5.2467 43 1 3.3947 -5.3244 5.6540 44 1 0.9645 -3.9963 4.1818 45 1 1.4524 -5.7724 4.0846 46 1 1.1354 -5.9961 6.5914 47 1 0.6479 -4.2201 6.6886 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075198303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:22 Heat of formation + Delta-G solvation = -96.612853 kcal Electronic energy + Delta-G solvation = -24507.673909 eV Core-core repulsion = 21075.705543 eV Total energy + Delta-G solvation = -3431.968365 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.98932 -40.35403 -38.36089 -36.19363 -34.87720 -34.52947 -33.14466 -31.62597 -29.82281 -27.92205 -27.13087 -25.08378 -23.48097 -23.15041 -22.39477 -21.81472 -21.31116 -19.82226 -18.62441 -18.10049 -17.88407 -17.16194 -16.76151 -16.47726 -16.08024 -15.82534 -15.27419 -15.05850 -14.57280 -14.46882 -14.45782 -14.22104 -13.90972 -13.71526 -13.41530 -13.19862 -13.03883 -12.86242 -12.66422 -12.59248 -12.56680 -12.44254 -12.27269 -12.23101 -12.01015 -11.73681 -11.72093 -11.65908 -11.56361 -11.23394 -10.87882 -10.65328 -10.48163 -10.38665 -9.43476 -8.23541 -6.38675 1.34430 1.37698 1.48288 1.86026 2.28590 2.43905 2.87857 2.98068 3.05388 3.55858 3.68991 3.83931 3.92602 3.94959 4.05539 4.12620 4.17916 4.21995 4.33128 4.37083 4.43753 4.52815 4.59988 4.72538 4.76947 4.78909 4.80716 4.85410 4.87798 4.94115 5.01438 5.02882 5.08566 5.11427 5.16177 5.22508 5.28303 5.34185 5.34756 5.35404 5.41065 5.56192 5.85429 6.05882 6.24316 6.68771 6.81087 7.27271 7.50316 8.83611 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013570 B = 0.003994 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.924765 B = 7008.658974 C = 8126.599474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.063 3.937 3 H 0.071 0.929 4 C -0.142 4.142 5 C -0.153 4.153 6 C 0.085 3.915 7 H 0.088 0.912 8 C -0.097 4.097 9 C -0.118 4.118 10 C 0.495 3.505 11 O -0.600 6.600 12 N -0.601 5.601 13 C 0.264 3.736 14 C -0.544 4.544 15 H 0.051 0.949 16 C 0.008 3.992 17 N -0.928 5.928 18 Si 0.968 3.032 19 H -0.262 1.262 20 H -0.279 1.279 21 H -0.274 1.274 22 C 0.143 3.857 23 C -0.194 4.194 24 C -0.163 4.163 25 C -0.162 4.162 26 O -0.397 6.397 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.019 0.981 39 H -0.005 1.005 40 H 0.267 0.733 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.369 0.351 -16.366 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.005 3.995 3 H 0.089 0.911 4 C -0.180 4.180 5 C -0.191 4.191 6 C 0.028 3.972 7 H 0.106 0.894 8 C -0.135 4.135 9 C -0.157 4.157 10 C 0.285 3.715 11 O -0.482 6.482 12 N -0.331 5.331 13 C 0.142 3.858 14 C -0.583 4.583 15 H 0.069 0.931 16 C -0.191 4.191 17 N -0.568 5.568 18 Si 0.792 3.208 19 H -0.187 1.187 20 H -0.204 1.204 21 H -0.199 1.199 22 C 0.020 3.980 23 C -0.213 4.213 24 C -0.199 4.199 25 C -0.199 4.199 26 O -0.318 6.318 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.133 0.867 38 H 0.037 0.963 39 H 0.013 0.987 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.099 0.901 44 H 0.129 0.871 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.685 0.411 -16.236 24.757 hybrid contribution 1.130 0.527 0.765 1.463 sum -17.555 0.938 -15.472 23.418 Atomic orbital electron populations 1.22105 0.93805 1.02779 1.02679 1.22909 0.95208 0.96197 0.85155 0.91055 1.23173 0.97445 0.99877 0.97455 1.23319 0.98736 1.02039 0.95011 1.23015 0.91418 0.89518 0.93213 0.89402 1.21432 0.96936 1.01779 0.93373 1.21617 0.95354 1.04654 0.94086 1.21507 0.91256 0.75788 0.82962 1.90611 1.27094 1.53618 1.76898 1.48197 1.08028 1.67073 1.09785 1.18671 0.84046 0.95639 0.87431 1.21713 1.16214 0.95775 1.24596 0.93105 1.25871 0.95497 1.00543 0.97208 1.70056 1.21392 1.29930 1.35420 0.85406 0.77676 0.78865 0.78810 1.18656 1.20400 1.19915 1.21200 0.81530 0.94890 1.00373 1.22636 0.92840 0.97038 1.08788 1.23175 0.99805 1.04120 0.92849 1.23014 0.96951 1.03311 0.96664 1.88445 1.70775 1.40999 1.31576 0.92843 0.89883 0.91955 0.88921 0.88875 0.91293 0.88215 0.90570 0.93386 0.88254 0.86695 0.96265 0.98654 0.92369 0.91122 0.88555 0.90102 0.87115 0.87953 0.88079 0.87517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.44 71.98 0.68 -1.47 16 2 C 0.06 1.10 4.16 31.06 0.13 1.23 16 3 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 4 C -0.14 -1.87 6.54 31.86 0.21 -1.66 16 5 C -0.15 -2.59 6.57 32.06 0.21 -2.38 16 6 C 0.09 1.82 3.43 31.26 0.11 1.93 16 7 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 8 C -0.10 -2.81 4.25 30.59 0.13 -2.68 16 9 C -0.12 -3.62 4.17 29.84 0.12 -3.50 16 10 C 0.49 21.99 7.67 87.65 0.67 22.67 16 11 O -0.60 -32.80 15.56 -3.04 -0.05 -32.84 16 12 N -0.60 -27.16 2.46 -826.18 -2.03 -29.19 16 13 C 0.26 14.97 5.16 85.63 0.44 15.41 16 14 C -0.54 -32.85 9.39 25.60 0.24 -32.61 16 15 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 16 C 0.01 0.46 5.46 84.65 0.46 0.92 16 17 N -0.93 -57.81 13.29 21.45 0.28 -57.53 16 18 Si 0.97 46.40 29.54 68.60 2.03 48.42 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 22 C 0.14 4.82 5.49 86.38 0.47 5.29 16 23 C -0.19 -5.44 5.95 -10.79 -0.06 -5.50 16 24 C -0.16 -3.20 9.18 30.60 0.28 -2.92 16 25 C -0.16 -3.35 10.25 30.60 0.31 -3.04 16 26 O -0.40 -9.57 10.35 -148.98 -1.54 -11.12 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 0.94 7.85 -2.39 -0.02 0.92 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.33 8.06 -2.39 -0.02 1.31 16 33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 2.24 8.10 -2.39 -0.02 2.22 16 35 H 0.05 1.64 8.10 -2.39 -0.02 1.63 16 36 H 0.10 2.93 7.17 -2.39 -0.02 2.91 16 37 H 0.11 2.86 6.84 -2.38 -0.02 2.84 16 38 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 39 H 0.00 -0.30 7.42 -2.39 -0.02 -0.32 16 40 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 41 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 42 H 0.10 2.68 6.18 -2.39 -0.01 2.66 16 43 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.11 1.85 7.87 -2.39 -0.02 1.83 16 45 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 47 H 0.11 1.96 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -77.01 379.02 4.02 -73.00 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.91 Total: 17.56 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 4.41 Total: -8.31 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -1.74 Total: -86.71 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -1.59 Total: -43.96 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -77.01 4.02 -73.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075198303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.616 kcal (2) G-P(sol) polarization free energy of solvation -77.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds