Wall clock time and date at job start Tue Mar 31 2020 07:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.35351 * 2 1 4 4 C 1.54947 * 110.30865 * 237.85618 * 2 1 3 5 5 C 1.55446 * 100.98729 * 204.69109 * 4 2 1 6 6 C 1.54388 * 102.18746 * 34.03910 * 5 4 2 7 7 H 1.08997 * 109.83163 * 98.29994 * 6 5 4 8 8 C 1.53000 * 109.82913 * 219.18241 * 6 5 4 9 9 C 1.53004 * 109.46862 * 184.81268 * 8 6 5 10 10 C 1.50696 * 109.47162 * 179.97438 * 9 8 6 11 11 O 1.21300 * 120.00035 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00090 * 180.02562 * 10 9 8 13 13 C 1.37090 * 119.99825 * 0.02562 * 12 10 9 14 14 H 1.07999 * 120.00172 * 127.91375 * 13 12 10 15 15 C 1.38951 * 120.00460 * 307.91021 * 13 12 10 16 16 N 1.31416 * 119.99635 * 336.92113 * 15 13 12 17 17 Si 1.86793 * 120.00483 * 156.91730 * 15 13 12 18 18 H 1.48507 * 109.47146 * 90.00234 * 17 15 13 19 19 H 1.48495 * 109.47430 * 210.00544 * 17 15 13 20 20 H 1.48506 * 109.47190 * 330.00351 * 17 15 13 21 21 C 1.46496 * 119.99967 * 179.97438 * 12 10 9 22 22 C 1.53875 * 110.03402 * 240.83470 * 21 12 10 23 23 C 1.54262 * 106.59943 * 240.71594 * 22 21 12 24 24 C 1.54892 * 104.31555 * 336.32349 * 23 22 21 25 25 C 1.54274 * 110.03065 * 123.66860 * 21 12 10 26 26 O 1.43233 * 107.66189 * 338.73948 * 6 5 4 27 27 H 1.08994 * 109.47113 * 299.31376 * 1 2 3 28 28 H 1.09010 * 109.46692 * 59.31229 * 1 2 3 29 29 H 1.08997 * 109.47301 * 179.30807 * 1 2 3 30 30 H 1.08997 * 111.12716 * 322.55668 * 4 2 1 31 31 H 1.08998 * 111.12387 * 86.72202 * 4 2 1 32 32 H 1.08999 * 110.83578 * 275.89391 * 5 4 2 33 33 H 1.09005 * 110.93033 * 152.22800 * 5 4 2 34 34 H 1.08997 * 109.47258 * 64.81889 * 8 6 5 35 35 H 1.09001 * 109.47369 * 304.80961 * 8 6 5 36 36 H 1.08999 * 109.47200 * 59.99723 * 9 8 6 37 37 H 1.09001 * 109.46878 * 299.99994 * 9 8 6 38 38 H 0.96997 * 119.99685 * 175.40843 * 16 15 13 39 39 H 1.09001 * 110.05608 * 2.25443 * 21 12 10 40 40 H 1.08998 * 110.02710 * 121.43424 * 22 21 12 41 41 H 1.08992 * 110.03154 * 0.02562 * 22 21 12 42 42 H 1.08999 * 110.48724 * 95.07015 * 23 22 21 43 43 H 1.09002 * 110.49077 * 217.57729 * 23 22 21 44 44 H 1.09004 * 110.75543 * 156.32121 * 24 23 22 45 45 H 1.08994 * 110.75839 * 279.69360 * 24 23 22 46 46 H 1.09001 * 110.48689 * 261.56993 * 25 21 12 47 47 H 1.08998 * 110.48694 * 24.08684 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9092 1.0220 0.0000 4 6 2.0678 -0.7731 -1.2304 5 6 3.4709 -1.2047 -0.7191 6 6 3.2112 -1.4419 0.7842 7 1 3.0630 -2.5056 0.9705 8 6 4.3991 -0.9324 1.6029 9 6 4.1878 -1.2789 3.0781 10 6 5.3581 -0.7777 3.8844 11 8 6.2712 -0.1996 3.3334 12 7 5.3902 -0.9716 5.2178 13 6 4.3586 -1.6253 5.8404 14 1 4.5639 -2.4636 6.4896 15 6 3.0486 -1.2093 5.6365 16 7 2.8030 0.0225 5.2498 17 14 1.6366 -2.4008 5.9117 18 1 1.1823 -2.3125 7.3228 19 1 0.5117 -2.0529 5.0069 20 1 2.0932 -3.7844 5.6244 21 6 6.5282 -0.4848 6.0016 22 6 7.2325 -1.6633 6.6963 23 6 7.1431 -1.3979 8.2133 24 6 6.9632 0.1366 8.3236 25 6 6.0353 0.4558 7.1207 26 8 2.0286 -0.7167 1.1406 27 1 -0.3633 0.5031 0.8960 28 1 -0.3633 0.5245 -0.8839 29 1 -0.3634 -1.0275 -0.0124 30 1 1.4472 -1.6416 -1.4507 31 1 2.1497 -0.1204 -2.0995 32 1 4.1992 -0.4071 -0.8657 33 1 3.7972 -2.1237 -1.2061 34 1 4.4800 0.1488 1.4917 35 1 5.3150 -1.4039 1.2465 36 1 4.1069 -2.3602 3.1894 37 1 3.2720 -0.8074 3.4345 38 1 1.8950 0.2940 5.0432 39 1 7.2303 0.0409 5.3544 40 1 8.2764 -1.7096 6.3863 41 1 6.7279 -2.5975 6.4500 42 1 6.2838 -1.9145 8.6410 43 1 8.0613 -1.7110 8.7102 44 1 6.4837 0.4025 9.2658 45 1 7.9209 0.6463 8.2189 46 1 6.1461 1.4976 6.8198 47 1 4.9964 0.2401 7.3703 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075201280.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:35 Heat of formation + Delta-G solvation = -102.852572 kcal Electronic energy + Delta-G solvation = -25430.645458 eV Core-core repulsion = 21998.406518 eV Total energy + Delta-G solvation = -3432.238940 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.43191 -38.75383 -36.62230 -34.02541 -33.17206 -31.99055 -31.35282 -30.03453 -27.87805 -27.21359 -25.72943 -24.53402 -22.57715 -21.28941 -20.24913 -19.94033 -19.21798 -19.07642 -16.72530 -16.39795 -15.67319 -15.58028 -15.01052 -14.58446 -14.26022 -14.00482 -13.97460 -13.45532 -13.33590 -13.02043 -12.63668 -12.57689 -12.39489 -12.01608 -11.90460 -11.52812 -11.43590 -11.29225 -11.00857 -10.95558 -10.82312 -10.67285 -10.60709 -10.49353 -10.43950 -10.31959 -10.28574 -10.13769 -9.98054 -9.90543 -9.57742 -9.07301 -8.58638 -8.09790 -7.19211 -6.29827 -4.10762 3.19178 3.30847 3.32573 4.05574 4.15637 4.29899 4.66744 4.84789 4.86439 4.97341 5.11163 5.34208 5.38556 5.42280 5.43847 5.49628 5.62775 5.68607 5.73508 5.77983 5.88473 5.94513 6.11739 6.13493 6.17764 6.25922 6.27110 6.35008 6.37559 6.39153 6.47439 6.49382 6.56549 6.60417 6.66741 6.78965 6.85130 6.99936 7.11064 7.19868 7.38389 7.46375 7.51135 7.58897 8.11241 8.75899 9.03785 9.73601 10.17109 10.72060 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018445 B = 0.004905 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.682880 B = 5706.943508 C = 6603.670856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.073 3.927 3 H 0.066 0.934 4 C -0.152 4.152 5 C -0.151 4.151 6 C 0.081 3.919 7 H 0.075 0.925 8 C -0.108 4.108 9 C -0.130 4.130 10 C 0.512 3.488 11 O -0.620 6.620 12 N -0.448 5.448 13 C -0.336 4.336 14 H 0.079 0.921 15 C 0.055 3.945 16 N -0.843 5.843 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.278 1.278 20 H -0.268 1.268 21 C 0.131 3.869 22 C -0.127 4.127 23 C -0.116 4.116 24 C -0.123 4.123 25 C -0.120 4.120 26 O -0.364 6.364 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.123 0.877 38 H 0.271 0.729 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.049 0.951 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.431 -2.278 -6.176 6.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.016 3.984 3 H 0.084 0.916 4 C -0.189 4.189 5 C -0.189 4.189 6 C 0.024 3.976 7 H 0.092 0.908 8 C -0.146 4.146 9 C -0.170 4.170 10 C 0.304 3.696 11 O -0.507 6.507 12 N -0.168 5.168 13 C -0.463 4.463 14 H 0.097 0.903 15 C -0.152 4.152 16 N -0.478 5.478 17 Si 0.721 3.279 18 H -0.205 1.205 19 H -0.203 1.203 20 H -0.193 1.193 21 C 0.027 3.973 22 C -0.166 4.166 23 C -0.154 4.154 24 C -0.161 4.161 25 C -0.158 4.158 26 O -0.284 6.284 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.141 0.859 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.229 -1.846 -6.204 6.588 hybrid contribution -0.773 -0.482 0.018 0.912 sum -2.002 -2.328 -6.185 6.906 Atomic orbital electron populations 1.21866 0.94248 1.02454 1.02091 1.22900 0.94479 0.95812 0.85259 0.91569 1.23332 0.96614 1.00599 0.98398 1.23207 0.97381 1.02395 0.95877 1.22813 0.86081 0.95899 0.92819 0.90759 1.21700 0.95488 1.01742 0.95691 1.21710 1.01255 1.01474 0.92544 1.20441 0.86666 0.79951 0.82568 1.90462 1.40593 1.48020 1.71588 1.43425 1.17895 1.51347 1.04101 1.19054 0.84398 1.11528 1.31359 0.90318 1.25455 0.98911 0.94675 0.96159 1.70058 1.21997 1.14479 1.41310 0.86467 0.81607 0.81562 0.78293 1.20465 1.20284 1.19269 1.21547 0.89944 0.93180 0.92611 1.22411 0.99182 1.00184 0.94778 1.22252 1.00356 0.96286 0.96482 1.22503 0.99141 0.95950 0.98513 1.22635 1.01195 0.98057 0.93944 1.88549 1.42064 1.64576 1.33183 0.91795 0.91770 0.92201 0.90675 0.90484 0.90375 0.90419 0.91688 0.91720 0.91289 0.85935 0.91876 0.90622 0.93083 0.91176 0.91743 0.93080 0.92456 0.92606 0.93242 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.62 37.16 0.36 -1.48 16 2 C 0.07 1.05 4.08 -25.70 -0.10 0.95 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.15 -1.78 6.57 -24.40 -0.16 -1.94 16 5 C -0.15 -1.98 6.56 -24.70 -0.16 -2.14 16 6 C 0.08 1.38 3.51 -26.00 -0.09 1.29 16 7 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 8 C -0.11 -2.18 4.07 -26.73 -0.11 -2.29 16 9 C -0.13 -3.07 3.99 -27.88 -0.11 -3.18 16 10 C 0.51 13.46 7.17 -10.99 -0.08 13.39 16 11 O -0.62 -17.38 15.33 5.54 0.08 -17.30 16 12 N -0.45 -11.32 2.36 -106.54 -0.25 -11.57 16 13 C -0.34 -8.42 6.88 -14.94 -0.10 -8.52 16 14 H 0.08 1.94 7.33 -52.49 -0.38 1.56 16 15 C 0.06 1.39 3.46 -17.47 -0.06 1.33 16 16 N -0.84 -22.38 11.46 55.50 0.64 -21.74 16 17 Si 0.90 19.65 29.61 -169.99 -5.03 14.62 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 21 C 0.13 2.98 3.29 -66.81 -0.22 2.76 16 22 C -0.13 -2.45 6.26 -25.62 -0.16 -2.61 16 23 C -0.12 -1.94 6.82 -25.07 -0.17 -2.11 16 24 C -0.12 -2.09 6.94 -24.55 -0.17 -2.26 16 25 C -0.12 -2.54 6.41 -24.88 -0.16 -2.70 16 26 O -0.36 -6.77 10.32 -35.23 -0.36 -7.14 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.81 8.06 -51.93 -0.42 0.40 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.03 7.85 -51.93 -0.41 0.62 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 1.42 8.10 -51.93 -0.42 1.00 16 35 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 36 H 0.07 1.56 8.09 -51.93 -0.42 1.14 16 37 H 0.12 3.13 4.65 -51.93 -0.24 2.89 16 38 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.08 1.83 6.95 -51.93 -0.36 1.47 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.07 1.42 7.03 -51.93 -0.36 1.06 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.09 2.18 6.97 -51.93 -0.36 1.82 16 LS Contribution 363.34 15.07 5.48 5.48 Total: -1.00 -29.22 363.34 -9.39 -38.61 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -8.43 Total: 8.57 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -1.50 Total: -9.52 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.39 Total: -33.32 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.28 Total: -24.44 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.22 -9.39 -38.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075201280.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.247 kcal (2) G-P(sol) polarization free energy of solvation -29.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds