Wall clock time and date at job start Tue Mar 31 2020 07:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.35351 * 2 1 4 4 C 1.54947 * 110.30865 * 237.85618 * 2 1 3 5 5 C 1.55446 * 100.98729 * 204.69109 * 4 2 1 6 6 C 1.54388 * 102.18746 * 34.03910 * 5 4 2 7 7 H 1.08997 * 109.83163 * 98.29994 * 6 5 4 8 8 C 1.53000 * 109.82913 * 219.18241 * 6 5 4 9 9 C 1.53004 * 109.46862 * 184.81268 * 8 6 5 10 10 C 1.50696 * 109.47162 * 179.97438 * 9 8 6 11 11 O 1.21300 * 120.00035 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00090 * 180.02562 * 10 9 8 13 13 C 1.37090 * 119.99825 * 0.02562 * 12 10 9 14 14 H 1.07999 * 120.00172 * 127.91375 * 13 12 10 15 15 C 1.38951 * 120.00460 * 307.91021 * 13 12 10 16 16 N 1.31416 * 119.99635 * 336.92113 * 15 13 12 17 17 Si 1.86793 * 120.00483 * 156.91730 * 15 13 12 18 18 H 1.48507 * 109.47146 * 90.00234 * 17 15 13 19 19 H 1.48495 * 109.47430 * 210.00544 * 17 15 13 20 20 H 1.48506 * 109.47190 * 330.00351 * 17 15 13 21 21 C 1.46496 * 119.99967 * 179.97438 * 12 10 9 22 22 C 1.53875 * 110.03402 * 240.83470 * 21 12 10 23 23 C 1.54262 * 106.59943 * 240.71594 * 22 21 12 24 24 C 1.54892 * 104.31555 * 336.32349 * 23 22 21 25 25 C 1.54274 * 110.03065 * 123.66860 * 21 12 10 26 26 O 1.43233 * 107.66189 * 338.73948 * 6 5 4 27 27 H 1.08994 * 109.47113 * 299.31376 * 1 2 3 28 28 H 1.09010 * 109.46692 * 59.31229 * 1 2 3 29 29 H 1.08997 * 109.47301 * 179.30807 * 1 2 3 30 30 H 1.08997 * 111.12716 * 322.55668 * 4 2 1 31 31 H 1.08998 * 111.12387 * 86.72202 * 4 2 1 32 32 H 1.08999 * 110.83578 * 275.89391 * 5 4 2 33 33 H 1.09005 * 110.93033 * 152.22800 * 5 4 2 34 34 H 1.08997 * 109.47258 * 64.81889 * 8 6 5 35 35 H 1.09001 * 109.47369 * 304.80961 * 8 6 5 36 36 H 1.08999 * 109.47200 * 59.99723 * 9 8 6 37 37 H 1.09001 * 109.46878 * 299.99994 * 9 8 6 38 38 H 0.96997 * 119.99685 * 175.40843 * 16 15 13 39 39 H 1.09001 * 110.05608 * 2.25443 * 21 12 10 40 40 H 1.08998 * 110.02710 * 121.43424 * 22 21 12 41 41 H 1.08992 * 110.03154 * 0.02562 * 22 21 12 42 42 H 1.08999 * 110.48724 * 95.07015 * 23 22 21 43 43 H 1.09002 * 110.49077 * 217.57729 * 23 22 21 44 44 H 1.09004 * 110.75543 * 156.32121 * 24 23 22 45 45 H 1.08994 * 110.75839 * 279.69360 * 24 23 22 46 46 H 1.09001 * 110.48689 * 261.56993 * 25 21 12 47 47 H 1.08998 * 110.48694 * 24.08684 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9092 1.0220 0.0000 4 6 2.0678 -0.7731 -1.2304 5 6 3.4709 -1.2047 -0.7191 6 6 3.2112 -1.4419 0.7842 7 1 3.0630 -2.5056 0.9705 8 6 4.3991 -0.9324 1.6029 9 6 4.1878 -1.2789 3.0781 10 6 5.3581 -0.7777 3.8844 11 8 6.2712 -0.1996 3.3334 12 7 5.3902 -0.9716 5.2178 13 6 4.3586 -1.6253 5.8404 14 1 4.5639 -2.4636 6.4896 15 6 3.0486 -1.2093 5.6365 16 7 2.8030 0.0225 5.2498 17 14 1.6366 -2.4008 5.9117 18 1 1.1823 -2.3125 7.3228 19 1 0.5117 -2.0529 5.0069 20 1 2.0932 -3.7844 5.6244 21 6 6.5282 -0.4848 6.0016 22 6 7.2325 -1.6633 6.6963 23 6 7.1431 -1.3979 8.2133 24 6 6.9632 0.1366 8.3236 25 6 6.0353 0.4558 7.1207 26 8 2.0286 -0.7167 1.1406 27 1 -0.3633 0.5031 0.8960 28 1 -0.3633 0.5245 -0.8839 29 1 -0.3634 -1.0275 -0.0124 30 1 1.4472 -1.6416 -1.4507 31 1 2.1497 -0.1204 -2.0995 32 1 4.1992 -0.4071 -0.8657 33 1 3.7972 -2.1237 -1.2061 34 1 4.4800 0.1488 1.4917 35 1 5.3150 -1.4039 1.2465 36 1 4.1069 -2.3602 3.1894 37 1 3.2720 -0.8074 3.4345 38 1 1.8950 0.2940 5.0432 39 1 7.2303 0.0409 5.3544 40 1 8.2764 -1.7096 6.3863 41 1 6.7279 -2.5975 6.4500 42 1 6.2838 -1.9145 8.6410 43 1 8.0613 -1.7110 8.7102 44 1 6.4837 0.4025 9.2658 45 1 7.9209 0.6463 8.2189 46 1 6.1461 1.4976 6.8198 47 1 4.9964 0.2401 7.3703 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075201280.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:35 Heat of formation + Delta-G solvation = -118.204431 kcal Electronic energy + Delta-G solvation = -25431.311164 eV Core-core repulsion = 21998.406518 eV Total energy + Delta-G solvation = -3432.904646 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.93865 -40.39910 -38.37859 -35.98578 -34.64934 -33.26255 -33.15879 -31.41362 -29.46135 -28.83978 -27.27085 -26.34842 -24.00306 -22.41424 -21.66777 -21.41912 -21.06480 -20.81210 -18.34547 -17.93918 -17.45857 -17.17123 -16.67332 -16.25582 -15.93284 -15.78751 -15.25597 -15.02424 -14.60162 -14.43118 -14.25759 -14.11634 -13.83608 -13.41975 -13.29034 -13.20044 -12.97212 -12.77962 -12.59317 -12.53909 -12.38374 -12.28282 -12.09251 -11.90914 -11.89151 -11.82299 -11.70243 -11.62828 -11.60172 -11.39244 -11.33577 -10.55468 -10.41060 -10.12611 -9.18782 -8.27321 -6.13859 1.41478 1.49277 1.58300 2.17995 2.36099 2.89348 3.02376 3.07655 3.61456 3.81685 3.85746 3.88482 3.91249 4.16593 4.17969 4.28169 4.30536 4.44526 4.48876 4.58059 4.64492 4.69808 4.75093 4.78329 4.81326 4.84065 4.88061 4.88358 4.90759 5.01194 5.06367 5.07073 5.10967 5.16359 5.22395 5.23945 5.30141 5.40270 5.42519 5.49217 5.53569 5.60098 5.66048 6.14330 6.27282 6.74292 7.05047 7.70359 8.15928 8.74725 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018445 B = 0.004905 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.682880 B = 5706.943508 C = 6603.670856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.057 3.943 3 H 0.056 0.944 4 C -0.137 4.137 5 C -0.145 4.145 6 C 0.080 3.920 7 H 0.081 0.919 8 C -0.098 4.098 9 C -0.124 4.124 10 C 0.490 3.510 11 O -0.650 6.650 12 N -0.452 5.452 13 C -0.343 4.343 14 H 0.085 0.915 15 C 0.025 3.975 16 N -0.874 5.874 17 Si 0.954 3.046 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.257 1.257 21 C 0.117 3.883 22 C -0.121 4.121 23 C -0.107 4.107 24 C -0.111 4.111 25 C -0.117 4.117 26 O -0.400 6.400 27 H 0.045 0.955 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.037 0.963 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.269 0.731 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.035 0.965 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.690 -3.788 -6.298 7.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.000 4.000 3 H 0.074 0.926 4 C -0.175 4.175 5 C -0.183 4.183 6 C 0.022 3.978 7 H 0.099 0.901 8 C -0.137 4.137 9 C -0.163 4.163 10 C 0.282 3.718 11 O -0.539 6.539 12 N -0.170 5.170 13 C -0.470 4.470 14 H 0.102 0.898 15 C -0.180 4.180 16 N -0.510 5.510 17 Si 0.778 3.222 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.181 1.181 21 C 0.014 3.986 22 C -0.159 4.159 23 C -0.145 4.145 24 C -0.148 4.148 25 C -0.156 4.156 26 O -0.320 6.320 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.054 0.946 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.483 -3.367 -6.297 7.293 hybrid contribution -0.659 0.071 0.094 0.670 sum -2.142 -3.296 -6.203 7.344 Atomic orbital electron populations 1.21858 0.92690 1.02883 1.02704 1.23205 0.95808 0.95426 0.85582 0.92614 1.23303 0.95288 1.01150 0.97711 1.23191 0.98436 1.03612 0.93041 1.22822 0.84379 0.95745 0.94812 0.90097 1.21616 0.97640 1.00062 0.94336 1.21640 0.99189 1.01262 0.94245 1.21039 0.87221 0.80239 0.83278 1.90417 1.41792 1.49541 1.72178 1.43654 1.18496 1.50683 1.04172 1.19247 0.84662 1.11738 1.31392 0.89775 1.26109 1.00770 0.95624 0.95525 1.70154 1.22282 1.16216 1.42361 0.85547 0.78483 0.80000 0.78187 1.19723 1.20910 1.18115 1.21805 0.89172 0.95030 0.92627 1.22343 0.99322 0.97692 0.96556 1.22227 1.02041 0.95863 0.94367 1.22470 0.98978 0.96384 0.97007 1.22535 1.00497 0.96923 0.95622 1.88517 1.42500 1.65131 1.35896 0.93548 0.88738 0.91866 0.89123 0.87878 0.90790 0.87838 0.94385 0.91356 0.90808 0.87794 0.92119 0.93018 0.91482 0.92459 0.92088 0.89498 0.90542 0.90619 0.94565 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.62 71.98 0.69 -2.68 16 2 C 0.06 1.60 4.08 31.26 0.13 1.73 16 3 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.14 -2.85 6.57 32.10 0.21 -2.64 16 5 C -0.15 -3.56 6.56 31.91 0.21 -3.35 16 6 C 0.08 2.70 3.51 31.07 0.11 2.81 16 7 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 8 C -0.10 -4.12 4.07 30.60 0.12 -3.99 16 9 C -0.12 -6.05 3.99 29.85 0.12 -5.93 16 10 C 0.49 26.91 7.17 87.66 0.63 27.54 16 11 O -0.65 -38.26 15.33 -3.09 -0.05 -38.31 16 12 N -0.45 -23.59 2.36 -609.37 -1.44 -25.03 16 13 C -0.34 -17.50 6.88 84.04 0.58 -16.92 16 14 H 0.08 4.15 7.33 -2.91 -0.02 4.13 16 15 C 0.02 1.25 3.46 84.93 0.29 1.55 16 16 N -0.87 -48.03 11.46 21.66 0.25 -47.78 16 17 Si 0.95 40.48 29.61 68.60 2.03 42.52 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 21 C 0.12 5.46 3.29 45.72 0.15 5.61 16 22 C -0.12 -4.55 6.26 31.32 0.20 -4.35 16 23 C -0.11 -3.31 6.82 31.67 0.22 -3.09 16 24 C -0.11 -3.52 6.94 32.01 0.22 -3.30 16 25 C -0.12 -5.06 6.41 31.80 0.20 -4.85 16 26 O -0.40 -15.09 10.32 -148.98 -1.54 -16.63 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 1.64 8.06 -2.39 -0.02 1.62 16 31 H 0.10 1.63 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.87 7.85 -2.39 -0.02 1.85 16 33 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 35 H 0.07 2.75 8.10 -2.39 -0.02 2.73 16 36 H 0.07 3.44 8.09 -2.39 -0.02 3.42 16 37 H 0.10 5.55 4.65 -2.39 -0.01 5.53 16 38 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 39 H 0.05 2.61 6.95 -2.39 -0.02 2.60 16 40 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.06 2.30 7.03 -2.39 -0.02 2.28 16 42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.06 2.99 6.97 -2.39 -0.02 2.97 16 Total: -1.00 -66.59 363.34 4.26 -62.33 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.92 Total: 34.76 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 4.08 Total: -11.87 kcal Atomic # 7 Polarization: -71.61 SS G_CDS: -1.19 Total: -72.80 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: -1.59 Total: -54.94 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.52 kcal Total: -66.59 4.26 -62.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075201280.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.869 kcal (2) G-P(sol) polarization free energy of solvation -66.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds