Wall clock time and date at job start Tue Mar 31 2020 07:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.87069 * 2 1 4 4 O 1.43747 * 109.88109 * 121.16420 * 2 1 3 5 5 C 1.44376 * 106.98004 * 145.93379 * 4 2 1 6 6 H 1.09008 * 110.61090 * 78.43880 * 5 4 2 7 7 C 1.52998 * 110.62218 * 201.43741 * 5 4 2 8 8 C 1.54994 * 103.48933 * 319.94321 * 5 4 2 9 9 H 1.08999 * 110.90495 * 155.22048 * 8 5 4 10 10 C 1.52998 * 110.90309 * 278.81984 * 8 5 4 11 11 C 1.54104 * 109.87841 * 238.99156 * 2 1 3 12 12 H 1.09003 * 110.59651 * 119.81265 * 11 2 1 13 13 C 1.50703 * 110.48682 * 357.22303 * 11 2 1 14 14 O 1.21289 * 119.99976 * 299.62526 * 13 11 2 15 15 N 1.34771 * 119.99742 * 119.62326 * 13 11 2 16 16 C 1.37098 * 120.00359 * 5.51767 * 15 13 11 17 17 H 1.08005 * 120.00328 * 233.80910 * 16 15 13 18 18 C 1.38952 * 119.99875 * 53.80652 * 16 15 13 19 19 N 1.31414 * 119.99869 * 209.46400 * 18 16 15 20 20 Si 1.86800 * 120.00177 * 29.46430 * 18 16 15 21 21 H 1.48499 * 109.46876 * 94.92254 * 20 18 16 22 22 H 1.48496 * 109.47311 * 214.92792 * 20 18 16 23 23 H 1.48498 * 109.46978 * 334.93203 * 20 18 16 24 24 C 1.46502 * 120.00140 * 185.51727 * 15 13 11 25 25 C 1.54259 * 110.03418 * 234.40561 * 24 15 13 26 26 C 1.54965 * 104.16414 * 217.13513 * 25 24 15 27 27 C 1.54893 * 102.77374 * 37.88335 * 26 25 24 28 28 C 1.53872 * 110.03285 * 117.18677 * 24 15 13 29 29 H 1.09003 * 109.47459 * 187.89925 * 1 2 3 30 30 H 1.09006 * 109.46957 * 307.89431 * 1 2 3 31 31 H 1.08999 * 109.47485 * 67.89447 * 1 2 3 32 32 H 1.08995 * 109.47391 * 174.07134 * 7 5 4 33 33 H 1.09005 * 109.47067 * 294.07239 * 7 5 4 34 34 H 1.09003 * 109.46876 * 54.06953 * 7 5 4 35 35 H 1.09011 * 109.46977 * 169.10795 * 10 8 5 36 36 H 1.09000 * 109.47743 * 289.10816 * 10 8 5 37 37 H 1.08994 * 109.47358 * 49.11077 * 10 8 5 38 38 H 0.97002 * 119.99729 * 180.02562 * 19 18 16 39 39 H 1.09005 * 110.01118 * 355.79375 * 24 15 13 40 40 H 1.09003 * 110.48863 * 335.78241 * 25 24 15 41 41 H 1.08999 * 110.49102 * 98.42132 * 25 24 15 42 42 H 1.08998 * 110.71523 * 279.57935 * 26 25 24 43 43 H 1.08992 * 110.77016 * 156.21948 * 26 25 24 44 44 H 1.09003 * 110.48675 * 203.40572 * 27 26 25 45 45 H 1.09002 * 110.48124 * 80.76738 * 27 26 25 46 46 H 1.09000 * 110.03035 * 238.57358 * 28 24 15 47 47 H 1.08997 * 110.03592 * 0.02562 * 28 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6995 1.1567 5 6 3.2378 -1.3653 0.7629 6 1 4.0684 -0.6599 0.7347 7 6 3.5474 -2.5269 1.7093 8 6 2.9194 -1.8906 -0.6601 9 1 3.8331 -2.0208 -1.2401 10 6 2.1256 -3.1969 -0.5949 11 6 2.0539 -0.7466 -1.2421 12 1 2.6614 -0.0847 -1.8594 13 6 0.9072 -1.3077 -2.0430 14 8 0.1513 -2.1112 -1.5388 15 7 0.7217 -0.9168 -3.3193 16 6 1.6386 -0.0972 -3.9254 17 1 1.3170 0.8251 -4.3863 18 6 2.9816 -0.4531 -3.9466 19 7 3.9079 0.4787 -3.9695 20 14 3.4702 -2.2561 -3.9426 21 1 3.6909 -2.7121 -5.3385 22 1 4.7215 -2.4281 -3.1618 23 1 2.3863 -3.0613 -3.3245 24 6 -0.4596 -1.3675 -4.0592 25 6 -0.0312 -2.0423 -5.3785 26 6 -1.1161 -1.6081 -6.3963 27 6 -1.4039 -0.1425 -5.9857 28 6 -1.3324 -0.1603 -4.4448 29 1 -0.3634 -1.0179 0.1412 30 1 -0.3633 0.6312 0.8110 31 1 -0.3634 0.3867 -0.9521 32 1 4.4094 -3.0798 1.3361 33 1 3.7683 -2.1370 2.7030 34 1 2.6851 -3.1914 1.7632 35 1 1.7492 -3.4433 -1.5878 36 1 2.7741 -3.9991 -0.2428 37 1 1.2878 -3.0790 0.0923 38 1 4.8455 0.2302 -3.9848 39 1 -1.0357 -2.0661 -3.4523 40 1 0.9495 -1.6828 -5.6900 41 1 -0.0234 -3.1266 -5.2675 42 1 -2.0110 -2.2214 -6.2911 43 1 -0.7315 -1.6554 -7.4150 44 1 -2.3974 0.1587 -6.3181 45 1 -0.6451 0.5243 -6.3952 46 1 -2.3323 -0.2735 -4.0259 47 1 -0.8768 0.7610 -4.0819 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087215802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:44 Heat of formation + Delta-G solvation = -76.031812 kcal Electronic energy + Delta-G solvation = -27158.706010 eV Core-core repulsion = 23727.630106 eV Total energy + Delta-G solvation = -3431.075904 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.40832 -38.49870 -36.67063 -34.25363 -33.19439 -32.07883 -31.65147 -28.65666 -28.11403 -27.59885 -26.37467 -24.63188 -23.32323 -21.71303 -20.13248 -19.69638 -19.27601 -19.14043 -16.83470 -16.34277 -15.84622 -15.52230 -14.98371 -14.89707 -14.55014 -14.09131 -13.89163 -13.45296 -13.17541 -12.99424 -12.65927 -12.43261 -12.36834 -12.04114 -11.81613 -11.56322 -11.42935 -11.41005 -11.19607 -10.98611 -10.87718 -10.70070 -10.61664 -10.55751 -10.47332 -10.19502 -10.16135 -10.09664 -10.07525 -9.85669 -9.79079 -9.10813 -8.80166 -8.27142 -7.46476 -6.62668 -4.26814 3.06710 3.18691 3.28718 3.67984 4.08322 4.27325 4.40253 4.71090 5.11382 5.19038 5.22392 5.29557 5.42914 5.45829 5.56633 5.64807 5.77816 5.88647 5.94047 5.96926 6.00762 6.12394 6.12839 6.15495 6.17816 6.21614 6.24082 6.32250 6.37057 6.39691 6.42365 6.44864 6.47727 6.56234 6.60779 6.71481 6.79623 6.84829 6.90872 6.95344 7.07120 7.12389 7.52010 7.59851 7.82531 8.45277 8.93591 9.30271 9.75271 10.45995 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.017683 B = 0.007431 C = 0.006450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.048073 B = 3766.885346 C = 4339.982375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.098 3.902 3 H 0.067 0.933 4 O -0.372 6.372 5 C 0.079 3.921 6 H 0.066 0.934 7 C -0.143 4.143 8 C -0.112 4.112 9 H 0.075 0.925 10 C -0.135 4.135 11 C -0.143 4.143 12 H 0.134 0.866 13 C 0.513 3.487 14 O -0.583 6.583 15 N -0.464 5.464 16 C -0.345 4.345 17 H 0.097 0.903 18 C 0.085 3.915 19 N -0.845 5.845 20 Si 0.835 3.165 21 H -0.279 1.279 22 H -0.281 1.281 23 H -0.245 1.245 24 C 0.128 3.872 25 C -0.131 4.131 26 C -0.120 4.120 27 C -0.117 4.117 28 C -0.126 4.126 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.073 0.927 38 H 0.276 0.724 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.067 0.933 46 H 0.053 0.947 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.894 -2.448 2.158 4.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.040 3.960 3 H 0.085 0.915 4 O -0.291 6.291 5 C 0.021 3.979 6 H 0.084 0.916 7 C -0.200 4.200 8 C -0.131 4.131 9 H 0.094 0.906 10 C -0.192 4.192 11 C -0.164 4.164 12 H 0.152 0.848 13 C 0.303 3.697 14 O -0.467 6.467 15 N -0.185 5.185 16 C -0.472 4.472 17 H 0.114 0.886 18 C -0.124 4.124 19 N -0.479 5.479 20 Si 0.660 3.340 21 H -0.205 1.205 22 H -0.207 1.207 23 H -0.168 1.168 24 C 0.025 3.975 25 C -0.169 4.169 26 C -0.158 4.158 27 C -0.155 4.155 28 C -0.164 4.164 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.189 -2.768 2.594 4.956 hybrid contribution 0.825 -0.753 -0.601 1.268 sum -2.364 -3.521 1.993 4.686 Atomic orbital electron populations 1.22124 0.93793 1.03969 1.01016 1.22440 0.95307 0.94593 0.83665 0.91518 1.88797 1.39399 1.67515 1.33433 1.23036 0.87989 0.93571 0.93272 0.91649 1.21790 1.02010 0.97516 0.98722 1.22616 0.98471 0.96253 0.95754 0.90634 1.22010 0.99200 0.94131 1.03847 1.22911 0.97690 0.98617 0.97159 0.84789 1.20003 0.85676 0.82255 0.81752 1.90503 1.48952 1.36494 1.70784 1.43833 1.20855 1.45036 1.08807 1.18704 0.86262 1.02570 1.39643 0.88599 1.25590 0.95867 0.97089 0.93856 1.69880 1.01306 1.33392 1.43287 0.87399 0.79583 0.88288 0.78748 1.20527 1.20659 1.16847 1.21659 0.88443 0.94806 0.92639 1.22685 1.00274 0.98904 0.95061 1.22419 0.98391 0.96473 0.98537 1.22266 1.00336 0.96784 0.96081 1.22389 0.98695 0.99925 0.95406 0.89641 0.93650 0.91640 0.91644 0.92451 0.91319 0.91390 0.94672 0.90784 0.91379 0.90018 0.89650 0.92963 0.92310 0.92206 0.92788 0.91434 0.92811 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.27 37.15 0.31 -2.61 16 2 C 0.10 1.95 4.05 -26.16 -0.11 1.84 16 3 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 4 O -0.37 -7.22 10.84 -35.23 -0.38 -7.60 16 5 C 0.08 1.39 3.79 -25.68 -0.10 1.30 16 6 H 0.07 1.10 8.14 -51.92 -0.42 0.67 16 7 C -0.14 -2.08 8.76 37.16 0.33 -1.76 16 8 C -0.11 -2.24 2.34 -88.62 -0.21 -2.44 16 9 H 0.08 1.55 5.86 -51.93 -0.30 1.25 16 10 C -0.14 -2.69 6.29 37.16 0.23 -2.46 16 11 C -0.14 -3.08 2.16 -90.24 -0.20 -3.28 16 12 H 0.13 3.17 4.94 -51.93 -0.26 2.92 16 13 C 0.51 11.60 2.35 -10.99 -0.03 11.58 16 14 O -0.58 -13.75 10.42 5.55 0.06 -13.69 16 15 N -0.46 -10.42 1.80 -106.54 -0.19 -10.61 16 16 C -0.34 -8.30 6.90 -14.93 -0.10 -8.40 16 17 H 0.10 2.47 7.59 -52.48 -0.40 2.07 16 18 C 0.09 2.10 3.28 -17.47 -0.06 2.04 16 19 N -0.85 -21.64 13.84 55.50 0.77 -20.88 16 20 Si 0.83 19.44 23.19 -169.99 -3.94 15.50 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.44 6.80 56.52 0.38 -6.06 16 23 H -0.24 -5.83 4.64 56.52 0.26 -5.57 16 24 C 0.13 2.57 3.29 -66.82 -0.22 2.35 16 25 C -0.13 -2.45 6.37 -25.03 -0.16 -2.61 16 26 C -0.12 -1.83 6.91 -24.70 -0.17 -2.00 16 27 C -0.12 -1.80 6.83 -25.07 -0.17 -1.97 16 28 C -0.13 -2.20 6.29 -25.62 -0.16 -2.36 16 29 H 0.08 1.78 6.31 -51.93 -0.33 1.46 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.30 7.23 -51.93 -0.38 0.92 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.03 6.72 -51.93 -0.35 0.68 16 35 H 0.07 1.52 4.45 -51.92 -0.23 1.29 16 36 H 0.03 0.60 7.43 -51.93 -0.39 0.22 16 37 H 0.07 1.54 6.97 -51.93 -0.36 1.18 16 38 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 39 H 0.08 1.71 6.95 -51.93 -0.36 1.35 16 40 H 0.09 1.79 6.05 -51.93 -0.31 1.47 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.07 1.40 7.16 -51.93 -0.37 1.03 16 LS Contribution 332.09 15.07 5.00 5.00 Total: -1.00 -25.87 332.09 -7.47 -33.34 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -7.98 Total: 9.72 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -0.81 Total: -10.78 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 0.58 Total: -31.49 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.32 Total: -21.29 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -3.94 Total: 15.50 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -25.87 -7.47 -33.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087215802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.691 kcal (2) G-P(sol) polarization free energy of solvation -25.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds