Wall clock time and date at job start Tue Mar 31 2020 07:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.87069 * 2 1 4 4 O 1.43747 * 109.88109 * 121.16420 * 2 1 3 5 5 C 1.44376 * 106.98004 * 145.93379 * 4 2 1 6 6 H 1.09008 * 110.61090 * 78.43880 * 5 4 2 7 7 C 1.52998 * 110.62218 * 201.43741 * 5 4 2 8 8 C 1.54994 * 103.48933 * 319.94321 * 5 4 2 9 9 H 1.08999 * 110.90495 * 155.22048 * 8 5 4 10 10 C 1.52998 * 110.90309 * 278.81984 * 8 5 4 11 11 C 1.54104 * 109.87841 * 238.99156 * 2 1 3 12 12 H 1.09003 * 110.59651 * 119.81265 * 11 2 1 13 13 C 1.50703 * 110.48682 * 357.22303 * 11 2 1 14 14 O 1.21289 * 119.99976 * 299.62526 * 13 11 2 15 15 N 1.34771 * 119.99742 * 119.62326 * 13 11 2 16 16 C 1.37098 * 120.00359 * 5.51767 * 15 13 11 17 17 H 1.08005 * 120.00328 * 233.80910 * 16 15 13 18 18 C 1.38952 * 119.99875 * 53.80652 * 16 15 13 19 19 N 1.31414 * 119.99869 * 209.46400 * 18 16 15 20 20 Si 1.86800 * 120.00177 * 29.46430 * 18 16 15 21 21 H 1.48499 * 109.46876 * 94.92254 * 20 18 16 22 22 H 1.48496 * 109.47311 * 214.92792 * 20 18 16 23 23 H 1.48498 * 109.46978 * 334.93203 * 20 18 16 24 24 C 1.46502 * 120.00140 * 185.51727 * 15 13 11 25 25 C 1.54259 * 110.03418 * 234.40561 * 24 15 13 26 26 C 1.54965 * 104.16414 * 217.13513 * 25 24 15 27 27 C 1.54893 * 102.77374 * 37.88335 * 26 25 24 28 28 C 1.53872 * 110.03285 * 117.18677 * 24 15 13 29 29 H 1.09003 * 109.47459 * 187.89925 * 1 2 3 30 30 H 1.09006 * 109.46957 * 307.89431 * 1 2 3 31 31 H 1.08999 * 109.47485 * 67.89447 * 1 2 3 32 32 H 1.08995 * 109.47391 * 174.07134 * 7 5 4 33 33 H 1.09005 * 109.47067 * 294.07239 * 7 5 4 34 34 H 1.09003 * 109.46876 * 54.06953 * 7 5 4 35 35 H 1.09011 * 109.46977 * 169.10795 * 10 8 5 36 36 H 1.09000 * 109.47743 * 289.10816 * 10 8 5 37 37 H 1.08994 * 109.47358 * 49.11077 * 10 8 5 38 38 H 0.97002 * 119.99729 * 180.02562 * 19 18 16 39 39 H 1.09005 * 110.01118 * 355.79375 * 24 15 13 40 40 H 1.09003 * 110.48863 * 335.78241 * 25 24 15 41 41 H 1.08999 * 110.49102 * 98.42132 * 25 24 15 42 42 H 1.08998 * 110.71523 * 279.57935 * 26 25 24 43 43 H 1.08992 * 110.77016 * 156.21948 * 26 25 24 44 44 H 1.09003 * 110.48675 * 203.40572 * 27 26 25 45 45 H 1.09002 * 110.48124 * 80.76738 * 27 26 25 46 46 H 1.09000 * 110.03035 * 238.57358 * 28 24 15 47 47 H 1.08997 * 110.03592 * 0.02562 * 28 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6995 1.1567 5 6 3.2378 -1.3653 0.7629 6 1 4.0684 -0.6599 0.7347 7 6 3.5474 -2.5269 1.7093 8 6 2.9194 -1.8906 -0.6601 9 1 3.8331 -2.0208 -1.2401 10 6 2.1256 -3.1969 -0.5949 11 6 2.0539 -0.7466 -1.2421 12 1 2.6614 -0.0847 -1.8594 13 6 0.9072 -1.3077 -2.0430 14 8 0.1513 -2.1112 -1.5388 15 7 0.7217 -0.9168 -3.3193 16 6 1.6386 -0.0972 -3.9254 17 1 1.3170 0.8251 -4.3863 18 6 2.9816 -0.4531 -3.9466 19 7 3.9079 0.4787 -3.9695 20 14 3.4702 -2.2561 -3.9426 21 1 3.6909 -2.7121 -5.3385 22 1 4.7215 -2.4281 -3.1618 23 1 2.3863 -3.0613 -3.3245 24 6 -0.4596 -1.3675 -4.0592 25 6 -0.0312 -2.0423 -5.3785 26 6 -1.1161 -1.6081 -6.3963 27 6 -1.4039 -0.1425 -5.9857 28 6 -1.3324 -0.1603 -4.4448 29 1 -0.3634 -1.0179 0.1412 30 1 -0.3633 0.6312 0.8110 31 1 -0.3634 0.3867 -0.9521 32 1 4.4094 -3.0798 1.3361 33 1 3.7683 -2.1370 2.7030 34 1 2.6851 -3.1914 1.7632 35 1 1.7492 -3.4433 -1.5878 36 1 2.7741 -3.9991 -0.2428 37 1 1.2878 -3.0790 0.0923 38 1 4.8455 0.2302 -3.9848 39 1 -1.0357 -2.0661 -3.4523 40 1 0.9495 -1.6828 -5.6900 41 1 -0.0234 -3.1266 -5.2675 42 1 -2.0110 -2.2214 -6.2911 43 1 -0.7315 -1.6554 -7.4150 44 1 -2.3974 0.1587 -6.3181 45 1 -0.6451 0.5243 -6.3952 46 1 -2.3323 -0.2735 -4.0259 47 1 -0.8768 0.7610 -4.0819 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087215802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:43 Heat of formation + Delta-G solvation = -89.920178 kcal Electronic energy + Delta-G solvation = -27159.308255 eV Core-core repulsion = 23727.630106 eV Total energy + Delta-G solvation = -3431.678149 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.06913 -40.07243 -38.24257 -36.04417 -34.71110 -33.79564 -33.35343 -30.04997 -29.52291 -29.12977 -28.00003 -26.47647 -24.79425 -23.32580 -21.44968 -21.21097 -21.06404 -20.72753 -18.58834 -17.96762 -17.53486 -17.22645 -16.56784 -16.47650 -16.04434 -15.81078 -15.41211 -15.08291 -14.79579 -14.62770 -14.15821 -14.05578 -13.78427 -13.66897 -13.30010 -13.17927 -13.05596 -12.87153 -12.76472 -12.66805 -12.49677 -12.36070 -12.15015 -11.94766 -11.89559 -11.85596 -11.81291 -11.63688 -11.48970 -11.41590 -11.35398 -10.69342 -10.60253 -10.07004 -9.27799 -8.58161 -6.21026 1.16565 1.26772 1.37720 1.90574 2.16647 2.66518 2.77647 2.85412 3.55430 3.75148 3.81185 3.87234 3.94472 3.99104 4.11771 4.21440 4.33974 4.36812 4.52140 4.53303 4.60128 4.60407 4.63900 4.71382 4.73931 4.77305 4.82614 4.89490 4.92496 4.94545 5.01477 5.03643 5.11010 5.11985 5.15136 5.22943 5.26776 5.31726 5.39596 5.48297 5.50258 5.56900 5.70731 5.98682 6.00245 6.52687 7.00599 7.46698 7.92474 8.54381 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.017683 B = 0.007431 C = 0.006450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.048073 B = 3766.885346 C = 4339.982375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.098 3.902 3 H 0.074 0.926 4 O -0.376 6.376 5 C 0.078 3.922 6 H 0.076 0.924 7 C -0.139 4.139 8 C -0.115 4.115 9 H 0.068 0.932 10 C -0.123 4.123 11 C -0.148 4.148 12 H 0.112 0.888 13 C 0.511 3.489 14 O -0.595 6.595 15 N -0.471 5.471 16 C -0.333 4.333 17 H 0.075 0.925 18 C 0.067 3.933 19 N -0.872 5.872 20 Si 0.870 3.130 21 H -0.282 1.282 22 H -0.274 1.274 23 H -0.254 1.254 24 C 0.119 3.881 25 C -0.133 4.133 26 C -0.110 4.110 27 C -0.111 4.111 28 C -0.121 4.121 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.039 0.961 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.280 0.720 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.305 -3.097 2.590 5.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.040 3.960 3 H 0.092 0.908 4 O -0.296 6.296 5 C 0.020 3.980 6 H 0.094 0.906 7 C -0.196 4.196 8 C -0.134 4.134 9 H 0.087 0.913 10 C -0.180 4.180 11 C -0.169 4.169 12 H 0.130 0.870 13 C 0.302 3.698 14 O -0.480 6.480 15 N -0.192 5.192 16 C -0.461 4.461 17 H 0.092 0.908 18 C -0.140 4.140 19 N -0.507 5.507 20 Si 0.695 3.305 21 H -0.209 1.209 22 H -0.199 1.199 23 H -0.179 1.179 24 C 0.016 3.984 25 C -0.171 4.171 26 C -0.148 4.148 27 C -0.149 4.149 28 C -0.160 4.160 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.602 -3.419 3.020 5.812 hybrid contribution 0.915 -0.536 -0.717 1.280 sum -2.687 -3.955 2.303 5.307 Atomic orbital electron populations 1.21987 0.93429 1.03245 1.01226 1.22438 0.95637 0.94770 0.83190 0.90828 1.88785 1.40257 1.67621 1.32965 1.23239 0.87548 0.94731 0.92439 0.90600 1.21807 1.02526 0.96260 0.98992 1.22664 0.97719 0.95767 0.97288 0.91337 1.21851 0.99268 0.95030 1.01862 1.22889 0.97357 0.99104 0.97558 0.87027 1.20201 0.85794 0.81969 0.81827 1.90491 1.49509 1.36994 1.70995 1.43912 1.21292 1.44908 1.09049 1.18444 0.86588 1.02042 1.39022 0.90757 1.25794 0.95858 0.98457 0.93855 1.69907 1.01691 1.34321 1.44773 0.86875 0.79250 0.86078 0.78308 1.20911 1.19913 1.17859 1.21870 0.87775 0.95876 0.92864 1.22664 1.00258 0.98737 0.95445 1.22410 0.97918 0.96300 0.98137 1.22241 1.01742 0.96839 0.94048 1.22344 0.98724 0.97582 0.97333 0.91375 0.91239 0.92909 0.89735 0.90543 0.91846 0.94254 0.91904 0.91851 0.91014 0.91094 0.92226 0.92920 0.90079 0.90644 0.89669 0.92692 0.91055 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.40 8.27 71.98 0.60 -4.81 16 2 C 0.10 3.85 4.05 30.97 0.13 3.97 16 3 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 4 O -0.38 -14.08 10.84 -148.98 -1.61 -15.70 16 5 C 0.08 2.60 3.79 31.28 0.12 2.72 16 6 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 7 C -0.14 -3.64 8.76 71.98 0.63 -3.01 16 8 C -0.12 -4.52 2.34 -9.50 -0.02 -4.55 16 9 H 0.07 2.77 5.86 -2.39 -0.01 2.75 16 10 C -0.12 -4.82 6.29 71.98 0.45 -4.37 16 11 C -0.15 -6.42 2.16 -10.55 -0.02 -6.44 16 12 H 0.11 5.38 4.94 -2.39 -0.01 5.37 16 13 C 0.51 23.49 2.35 87.66 0.21 23.70 16 14 O -0.59 -28.43 10.42 -3.06 -0.03 -28.46 16 15 N -0.47 -21.56 1.80 -609.39 -1.10 -22.65 16 16 C -0.33 -16.47 6.90 84.04 0.58 -15.89 16 17 H 0.07 3.98 7.59 -2.91 -0.02 3.95 16 18 C 0.07 3.38 3.28 84.93 0.28 3.66 16 19 N -0.87 -45.33 13.84 21.66 0.30 -45.03 16 20 Si 0.87 40.42 23.19 68.60 1.59 42.01 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 22 H -0.27 -12.28 6.80 99.48 0.68 -11.60 16 23 H -0.25 -12.21 4.64 99.48 0.46 -11.75 16 24 C 0.12 4.80 3.29 45.71 0.15 4.95 16 25 C -0.13 -4.91 6.37 31.69 0.20 -4.71 16 26 C -0.11 -3.09 6.91 31.91 0.22 -2.87 16 27 C -0.11 -3.21 6.83 31.67 0.22 -2.99 16 28 C -0.12 -4.18 6.29 31.32 0.20 -3.98 16 29 H 0.07 2.84 6.31 -2.39 -0.02 2.82 16 30 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.05 2.11 7.23 -2.39 -0.02 2.09 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.06 1.74 6.72 -2.39 -0.02 1.72 16 35 H 0.04 1.75 4.45 -2.38 -0.01 1.74 16 36 H 0.06 2.06 7.43 -2.39 -0.02 2.04 16 37 H 0.06 2.59 6.97 -2.39 -0.02 2.58 16 38 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 39 H 0.07 2.99 6.95 -2.38 -0.02 2.97 16 40 H 0.06 2.51 6.05 -2.39 -0.01 2.50 16 41 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.05 2.01 7.16 -2.39 -0.02 2.00 16 Total: -1.00 -56.07 332.09 3.75 -52.32 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 0.67 Total: 32.13 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 3.93 Total: -14.61 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -0.80 Total: -67.69 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -1.65 Total: -44.16 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 1.59 Total: 42.01 kcal Total: -56.07 3.75 -52.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087215802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.602 kcal (2) G-P(sol) polarization free energy of solvation -56.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds