Wall clock time and date at job start Tue Mar 31 2020 07:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.48986 * 2 1 4 4 C 1.53094 * 109.47729 * 120.02733 * 2 1 3 5 5 C 1.53170 * 109.16684 * 62.37525 * 4 2 1 6 6 C 1.50697 * 109.54536 * 176.84782 * 5 4 2 7 7 O 1.21283 * 119.99780 * 325.92098 * 6 5 4 8 8 N 1.34777 * 120.00048 * 145.92658 * 6 5 4 9 9 C 1.46499 * 119.99992 * 4.00304 * 8 6 5 10 10 C 1.50697 * 109.46925 * 84.19416 * 9 8 6 11 11 H 1.07999 * 120.00192 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99692 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00428 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00059 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47307 * 180.02562 * 14 12 10 16 16 H 1.48507 * 109.47123 * 300.00008 * 14 12 10 17 17 H 1.48498 * 109.46909 * 59.99916 * 14 12 10 18 18 C 1.46498 * 119.99729 * 184.00543 * 8 6 5 19 19 C 1.53004 * 109.47349 * 271.87941 * 18 8 6 20 20 C 1.52996 * 117.49752 * 243.74906 * 19 18 8 21 21 C 1.52997 * 117.49782 * 175.08702 * 19 18 8 22 22 C 1.53182 * 109.11173 * 56.93205 * 5 4 2 23 23 C 1.53110 * 109.15347 * 303.15721 * 22 5 4 24 24 H 1.08993 * 109.40485 * 297.48636 * 23 22 5 25 25 C 1.53006 * 109.47805 * 177.49999 * 23 22 5 26 26 O 1.42899 * 109.48291 * 239.96807 * 2 1 3 27 27 H 1.09000 * 109.46834 * 299.97174 * 1 2 3 28 28 H 1.08999 * 109.46834 * 59.97320 * 1 2 3 29 29 H 1.08994 * 109.46798 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.52373 * 302.46491 * 4 2 1 31 31 H 1.09007 * 109.57041 * 182.31291 * 4 2 1 32 32 H 1.09002 * 109.54337 * 297.02727 * 5 4 2 33 33 H 1.08999 * 109.46990 * 324.19000 * 9 8 6 34 34 H 1.09001 * 109.47138 * 204.19269 * 9 8 6 35 35 H 0.96999 * 120.00205 * 180.02562 * 13 12 10 36 36 H 1.09001 * 109.47378 * 31.88433 * 18 8 6 37 37 H 1.09008 * 109.47081 * 151.88301 * 18 8 6 38 38 H 1.09000 * 115.54275 * 29.42105 * 19 18 8 39 39 H 1.09000 * 117.50264 * 0.02562 * 20 19 18 40 40 H 1.09001 * 117.49270 * 145.02411 * 20 19 18 41 41 H 1.08999 * 117.50069 * 214.97998 * 21 19 18 42 42 H 1.09004 * 117.49886 * 0.02562 * 21 19 18 43 43 H 1.08997 * 109.51761 * 62.96666 * 22 5 4 44 44 H 1.08999 * 109.52654 * 183.15894 * 22 5 4 45 45 H 1.09003 * 109.46938 * 299.96479 * 25 23 22 46 46 H 1.09000 * 109.46820 * 59.96519 * 25 23 22 47 47 H 1.09001 * 109.47002 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0405 -0.7223 1.2496 5 6 1.5758 -2.1813 1.2123 6 6 2.1381 -2.9201 2.3993 7 8 3.2358 -2.6330 2.8277 8 7 1.4213 -3.8999 2.9846 9 6 0.1345 -4.3066 2.4146 10 6 0.3672 -5.3088 1.3135 11 1 1.3730 -5.6122 1.0631 12 6 -0.7041 -5.8385 0.6258 13 7 -1.9289 -5.4695 0.9311 14 14 -0.4157 -7.0803 -0.7395 15 1 -1.7200 -7.4927 -1.3172 16 1 0.4222 -6.4646 -1.7998 17 1 0.2801 -8.2704 -0.1874 18 6 1.9289 -4.5581 4.1909 19 6 2.8159 -5.7395 3.7925 20 6 2.3511 -7.1398 4.1972 21 6 3.5380 -6.4902 4.9131 22 6 2.0747 -2.8336 -0.0807 23 6 1.5645 -2.0285 -1.2789 24 1 0.4751 -2.0550 -1.2957 25 6 2.1100 -2.6374 -2.5723 26 8 2.0067 -0.6742 -1.1663 27 1 -0.3633 0.5134 0.8903 28 1 -0.3633 0.5143 -0.8897 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6421 -0.2357 2.1399 31 1 3.1298 -0.6874 1.2721 32 1 0.4868 -2.2179 1.2424 33 1 -0.3755 -3.4329 2.0089 34 1 -0.4812 -4.7579 3.1926 35 1 -2.6825 -5.8425 0.4475 36 1 2.5124 -3.8464 4.7750 37 1 1.0912 -4.9181 4.7883 38 1 3.3348 -5.6371 2.8394 39 1 1.4133 -7.2196 4.7469 40 1 2.5648 -7.9589 3.5105 41 1 4.5319 -6.8822 4.6972 42 1 3.3809 -6.1427 5.9342 43 1 3.1646 -2.8427 -0.0871 44 1 1.7006 -3.8557 -0.1410 45 1 3.1995 -2.6111 -2.5550 46 1 1.7727 -3.6704 -2.6580 47 1 1.7463 -2.0643 -3.4253 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094107453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:40 Heat of formation + Delta-G solvation = -74.322241 kcal Electronic energy + Delta-G solvation = -26047.918972 eV Core-core repulsion = 22616.917200 eV Total energy + Delta-G solvation = -3431.001772 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.10495 -38.56811 -36.80417 -34.68051 -33.23275 -32.94241 -32.49125 -29.33472 -27.89500 -26.38500 -26.21740 -23.47690 -22.89141 -21.99970 -21.95400 -20.34407 -19.10721 -18.11993 -16.61599 -16.41046 -16.07042 -15.83480 -15.43588 -14.70059 -14.46025 -14.30978 -14.17212 -13.73470 -13.63411 -12.90566 -12.55059 -12.50844 -12.36832 -12.22155 -12.06504 -11.76163 -11.69799 -11.52796 -11.33488 -11.27030 -11.13282 -11.01924 -10.92242 -10.80423 -10.53199 -10.29739 -10.19947 -9.92832 -9.73566 -9.68013 -9.39994 -9.32000 -8.73120 -8.53000 -7.74164 -6.20829 -4.25988 3.19985 3.26250 3.27730 3.39823 3.86326 4.07576 4.28078 4.34693 5.02433 5.10064 5.12782 5.19325 5.24574 5.26853 5.36026 5.41056 5.46088 5.59235 5.67025 5.70606 5.75352 5.84220 5.86030 5.93881 5.95861 6.08412 6.11777 6.16306 6.22479 6.26850 6.30029 6.31113 6.40648 6.42607 6.48659 6.52132 6.64586 6.72718 6.78448 6.85713 7.16446 7.53961 7.61819 7.74669 8.04475 8.32480 8.78002 9.03697 9.40160 10.86006 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.011150 B = 0.007323 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.552230 B = 3822.551006 C = 5289.009404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.092 3.908 3 H 0.097 0.903 4 C -0.133 4.133 5 C -0.101 4.101 6 C 0.524 3.476 7 O -0.573 6.573 8 N -0.594 5.594 9 C 0.238 3.762 10 C -0.525 4.525 11 H 0.061 0.939 12 C 0.067 3.933 13 N -0.891 5.891 14 Si 0.888 3.112 15 H -0.287 1.287 16 H -0.274 1.274 17 H -0.276 1.276 18 C 0.153 3.847 19 C -0.143 4.143 20 C -0.169 4.169 21 C -0.189 4.189 22 C -0.137 4.137 23 C 0.087 3.913 24 H 0.065 0.935 25 C -0.142 4.142 26 O -0.380 6.380 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.265 0.735 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.063 0.937 44 H 0.104 0.896 45 H 0.059 0.941 46 H 0.072 0.928 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.879 5.019 0.312 6.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.034 3.966 3 H 0.115 0.885 4 C -0.171 4.171 5 C -0.122 4.122 6 C 0.312 3.688 7 O -0.454 6.454 8 N -0.324 5.324 9 C 0.119 3.881 10 C -0.564 4.564 11 H 0.080 0.920 12 C -0.136 4.136 13 N -0.529 5.529 14 Si 0.716 3.284 15 H -0.212 1.212 16 H -0.199 1.199 17 H -0.202 1.202 18 C 0.030 3.970 19 C -0.162 4.162 20 C -0.206 4.206 21 C -0.227 4.227 22 C -0.174 4.174 23 C 0.029 3.971 24 H 0.083 0.917 25 C -0.199 4.199 26 O -0.300 6.300 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.119 0.881 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.082 0.918 44 H 0.122 0.878 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.323 5.209 0.359 6.779 hybrid contribution -0.281 -1.109 -0.540 1.265 sum 4.042 4.100 -0.181 5.760 Atomic orbital electron populations 1.22493 0.96499 1.03508 1.02172 1.22091 0.93380 0.95877 0.85247 0.88484 1.22072 1.02546 0.94638 0.97843 1.21267 1.02558 0.94264 0.94069 1.20411 0.84633 0.79839 0.83905 1.90580 1.20758 1.68427 1.65610 1.48240 1.22937 1.34528 1.26669 1.19461 0.78736 0.95767 0.94169 1.21371 0.93175 1.24526 1.17325 0.92049 1.24885 0.94961 0.96491 0.97230 1.69899 0.98136 1.43540 1.41370 0.86706 0.77509 0.81940 0.82285 1.21214 1.19925 1.20183 1.20833 0.96309 0.92735 0.87167 1.22605 1.01714 0.93067 0.98846 1.22917 0.97895 0.96614 1.03194 1.22935 0.96792 1.05672 0.97275 1.22203 1.01078 1.02000 0.92165 1.22075 0.98434 0.81526 0.95031 0.91711 1.21739 1.01648 1.00631 0.95900 1.87904 1.73989 1.25097 1.42988 0.91703 0.92186 0.91083 0.91400 0.90301 0.88133 0.94587 0.94728 0.92531 0.91069 0.91036 0.88072 0.88951 0.89369 0.89490 0.89297 0.91797 0.87754 0.92185 0.90925 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.55 8.65 37.16 0.32 -2.23 16 2 C 0.09 1.33 3.91 -26.68 -0.10 1.22 16 3 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 4 C -0.13 -2.15 4.63 -26.59 -0.12 -2.27 16 5 C -0.10 -1.85 1.74 -91.59 -0.16 -2.01 16 6 C 0.52 10.84 6.63 -10.99 -0.07 10.77 16 7 O -0.57 -12.98 15.85 5.55 0.09 -12.89 16 8 N -0.59 -12.20 2.47 -175.06 -0.43 -12.63 16 9 C 0.24 5.38 5.00 -5.20 -0.03 5.35 16 10 C -0.53 -12.72 7.61 -34.44 -0.26 -12.98 16 11 H 0.06 1.53 7.44 -52.49 -0.39 1.14 16 12 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -23.41 13.29 55.43 0.74 -22.68 16 14 Si 0.89 19.78 29.54 -169.99 -5.02 14.76 16 15 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 C 0.15 2.82 5.68 -4.04 -0.02 2.80 16 19 C -0.14 -2.55 6.00 -90.62 -0.54 -3.10 16 20 C -0.17 -2.72 10.18 -26.69 -0.27 -2.99 16 21 C -0.19 -2.76 10.25 -26.69 -0.27 -3.03 16 22 C -0.14 -2.51 4.69 -26.58 -0.12 -2.63 16 23 C 0.09 1.43 2.93 -26.67 -0.08 1.35 16 24 H 0.06 1.09 6.34 -51.93 -0.33 0.76 16 25 C -0.14 -2.08 9.56 37.16 0.36 -1.72 16 26 O -0.38 -6.20 10.24 -35.23 -0.36 -6.56 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.08 4.98 -51.93 -0.26 0.83 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.38 7.76 -51.92 -0.40 0.97 16 32 H 0.10 1.92 4.31 -51.93 -0.22 1.70 16 33 H 0.04 0.84 5.92 -51.93 -0.31 0.54 16 34 H 0.03 0.83 7.81 -51.93 -0.41 0.42 16 35 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 36 H 0.07 1.30 7.54 -51.93 -0.39 0.90 16 37 H 0.07 1.23 7.56 -51.92 -0.39 0.84 16 38 H 0.10 2.04 8.14 -51.93 -0.42 1.62 16 39 H 0.09 1.45 8.03 -51.93 -0.42 1.03 16 40 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.10 2.13 5.87 -51.93 -0.30 1.82 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -27.06 365.22 -9.00 -36.06 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -8.03 Total: 8.33 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -1.48 Total: -9.90 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.30 Total: -35.31 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.27 Total: -19.45 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.06 -9.00 -36.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094107453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.262 kcal (2) G-P(sol) polarization free energy of solvation -27.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds