Wall clock time and date at job start Tue Mar 31 2020 07:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.48986 * 2 1 4 4 C 1.53094 * 109.47729 * 120.02733 * 2 1 3 5 5 C 1.53170 * 109.16684 * 62.37525 * 4 2 1 6 6 C 1.50697 * 109.54536 * 176.84782 * 5 4 2 7 7 O 1.21283 * 119.99780 * 325.92098 * 6 5 4 8 8 N 1.34777 * 120.00048 * 145.92658 * 6 5 4 9 9 C 1.46499 * 119.99992 * 4.00304 * 8 6 5 10 10 C 1.50697 * 109.46925 * 84.19416 * 9 8 6 11 11 H 1.07999 * 120.00192 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99692 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00428 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00059 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47307 * 180.02562 * 14 12 10 16 16 H 1.48507 * 109.47123 * 300.00008 * 14 12 10 17 17 H 1.48498 * 109.46909 * 59.99916 * 14 12 10 18 18 C 1.46498 * 119.99729 * 184.00543 * 8 6 5 19 19 C 1.53004 * 109.47349 * 271.87941 * 18 8 6 20 20 C 1.52996 * 117.49752 * 243.74906 * 19 18 8 21 21 C 1.52997 * 117.49782 * 175.08702 * 19 18 8 22 22 C 1.53182 * 109.11173 * 56.93205 * 5 4 2 23 23 C 1.53110 * 109.15347 * 303.15721 * 22 5 4 24 24 H 1.08993 * 109.40485 * 297.48636 * 23 22 5 25 25 C 1.53006 * 109.47805 * 177.49999 * 23 22 5 26 26 O 1.42899 * 109.48291 * 239.96807 * 2 1 3 27 27 H 1.09000 * 109.46834 * 299.97174 * 1 2 3 28 28 H 1.08999 * 109.46834 * 59.97320 * 1 2 3 29 29 H 1.08994 * 109.46798 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.52373 * 302.46491 * 4 2 1 31 31 H 1.09007 * 109.57041 * 182.31291 * 4 2 1 32 32 H 1.09002 * 109.54337 * 297.02727 * 5 4 2 33 33 H 1.08999 * 109.46990 * 324.19000 * 9 8 6 34 34 H 1.09001 * 109.47138 * 204.19269 * 9 8 6 35 35 H 0.96999 * 120.00205 * 180.02562 * 13 12 10 36 36 H 1.09001 * 109.47378 * 31.88433 * 18 8 6 37 37 H 1.09008 * 109.47081 * 151.88301 * 18 8 6 38 38 H 1.09000 * 115.54275 * 29.42105 * 19 18 8 39 39 H 1.09000 * 117.50264 * 0.02562 * 20 19 18 40 40 H 1.09001 * 117.49270 * 145.02411 * 20 19 18 41 41 H 1.08999 * 117.50069 * 214.97998 * 21 19 18 42 42 H 1.09004 * 117.49886 * 0.02562 * 21 19 18 43 43 H 1.08997 * 109.51761 * 62.96666 * 22 5 4 44 44 H 1.08999 * 109.52654 * 183.15894 * 22 5 4 45 45 H 1.09003 * 109.46938 * 299.96479 * 25 23 22 46 46 H 1.09000 * 109.46820 * 59.96519 * 25 23 22 47 47 H 1.09001 * 109.47002 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0405 -0.7223 1.2496 5 6 1.5758 -2.1813 1.2123 6 6 2.1381 -2.9201 2.3993 7 8 3.2358 -2.6330 2.8277 8 7 1.4213 -3.8999 2.9846 9 6 0.1345 -4.3066 2.4146 10 6 0.3672 -5.3088 1.3135 11 1 1.3730 -5.6122 1.0631 12 6 -0.7041 -5.8385 0.6258 13 7 -1.9289 -5.4695 0.9311 14 14 -0.4157 -7.0803 -0.7395 15 1 -1.7200 -7.4927 -1.3172 16 1 0.4222 -6.4646 -1.7998 17 1 0.2801 -8.2704 -0.1874 18 6 1.9289 -4.5581 4.1909 19 6 2.8159 -5.7395 3.7925 20 6 2.3511 -7.1398 4.1972 21 6 3.5380 -6.4902 4.9131 22 6 2.0747 -2.8336 -0.0807 23 6 1.5645 -2.0285 -1.2789 24 1 0.4751 -2.0550 -1.2957 25 6 2.1100 -2.6374 -2.5723 26 8 2.0067 -0.6742 -1.1663 27 1 -0.3633 0.5134 0.8903 28 1 -0.3633 0.5143 -0.8897 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6421 -0.2357 2.1399 31 1 3.1298 -0.6874 1.2721 32 1 0.4868 -2.2179 1.2424 33 1 -0.3755 -3.4329 2.0089 34 1 -0.4812 -4.7579 3.1926 35 1 -2.6825 -5.8425 0.4475 36 1 2.5124 -3.8464 4.7750 37 1 1.0912 -4.9181 4.7883 38 1 3.3348 -5.6371 2.8394 39 1 1.4133 -7.2196 4.7469 40 1 2.5648 -7.9589 3.5105 41 1 4.5319 -6.8822 4.6972 42 1 3.3809 -6.1427 5.9342 43 1 3.1646 -2.8427 -0.0871 44 1 1.7006 -3.8557 -0.1410 45 1 3.1995 -2.6111 -2.5550 46 1 1.7727 -3.6704 -2.6580 47 1 1.7463 -2.0643 -3.4253 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094107453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:40 Heat of formation + Delta-G solvation = -87.209434 kcal Electronic energy + Delta-G solvation = -26048.477802 eV Core-core repulsion = 22616.917200 eV Total energy + Delta-G solvation = -3431.560602 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.59041 -40.02722 -38.21845 -36.40786 -34.60722 -34.39411 -34.23020 -30.58914 -29.62351 -27.94925 -27.55270 -25.14097 -24.48303 -23.34038 -23.19342 -21.76600 -20.46241 -19.71148 -18.50891 -18.02744 -17.57240 -17.17437 -16.78625 -16.43813 -16.03760 -15.76537 -15.50332 -15.10339 -15.00489 -14.46303 -14.14419 -13.97431 -13.83831 -13.63762 -13.55019 -13.28833 -13.00267 -12.93048 -12.80942 -12.73074 -12.59930 -12.56804 -12.34468 -12.30410 -12.01626 -11.83228 -11.68748 -11.54366 -11.31644 -11.12404 -10.78519 -10.73843 -10.51548 -10.18004 -9.46697 -8.15763 -6.25595 1.41317 1.43969 1.49316 1.72545 2.27864 2.44674 2.84209 2.99702 3.15500 3.61236 3.76252 3.83883 3.89179 3.95183 4.03672 4.13751 4.18319 4.25195 4.39053 4.41676 4.42542 4.47592 4.53086 4.67949 4.74144 4.75753 4.79079 4.80729 4.87759 4.93967 5.01279 5.03687 5.05072 5.13157 5.19935 5.22412 5.25367 5.27081 5.28966 5.32343 5.44513 5.70715 5.88657 6.11783 6.34818 6.57164 6.85758 7.32575 7.45640 8.90088 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.011150 B = 0.007323 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.552230 B = 3822.551006 C = 5289.009404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.091 3.909 3 H 0.126 0.874 4 C -0.127 4.127 5 C -0.098 4.098 6 C 0.519 3.481 7 O -0.594 6.594 8 N -0.596 5.596 9 C 0.254 3.746 10 C -0.520 4.520 11 H 0.050 0.950 12 C 0.030 3.970 13 N -0.917 5.917 14 Si 0.936 3.064 15 H -0.285 1.285 16 H -0.266 1.266 17 H -0.278 1.278 18 C 0.151 3.849 19 C -0.171 4.171 20 C -0.170 4.170 21 C -0.158 4.158 22 C -0.130 4.130 23 C 0.090 3.910 24 H 0.061 0.939 25 C -0.140 4.140 26 O -0.385 6.385 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.028 0.972 34 H 0.021 0.979 35 H 0.265 0.735 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.053 0.947 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.069 0.931 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.196 5.442 0.145 6.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.033 3.967 3 H 0.144 0.856 4 C -0.165 4.165 5 C -0.119 4.119 6 C 0.308 3.692 7 O -0.477 6.477 8 N -0.325 5.325 9 C 0.133 3.867 10 C -0.558 4.558 11 H 0.068 0.932 12 C -0.170 4.170 13 N -0.557 5.557 14 Si 0.762 3.238 15 H -0.210 1.210 16 H -0.191 1.191 17 H -0.203 1.203 18 C 0.028 3.972 19 C -0.190 4.190 20 C -0.207 4.207 21 C -0.195 4.195 22 C -0.168 4.168 23 C 0.033 3.967 24 H 0.079 0.921 25 C -0.197 4.197 26 O -0.305 6.305 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.046 0.954 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.119 0.881 42 H 0.128 0.872 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.649 5.628 0.198 7.303 hybrid contribution -0.350 -1.235 -0.423 1.352 sum 4.299 4.393 -0.226 6.151 Atomic orbital electron populations 1.22449 0.95608 1.02454 1.03674 1.22293 0.94095 0.96634 0.83642 0.85650 1.22054 1.01665 0.93208 0.99570 1.21266 1.01876 0.95653 0.93069 1.20824 0.84353 0.79752 0.84251 1.90556 1.21592 1.69109 1.66405 1.48252 1.22305 1.34674 1.27253 1.19142 0.79332 0.94930 0.93273 1.21401 0.92509 1.24449 1.17478 0.93188 1.25430 0.94763 0.97878 0.98924 1.69978 0.98678 1.44642 1.42404 0.85936 0.77408 0.80038 0.80395 1.21036 1.19064 1.20344 1.20967 0.96796 0.92985 0.86451 1.22444 1.03425 0.93915 0.99216 1.22959 0.99050 0.95255 1.03448 1.23038 0.96775 1.02673 0.97063 1.22100 1.00258 1.01122 0.93325 1.22022 0.98164 0.81666 0.94861 0.92138 1.21734 1.01870 1.00575 0.95509 1.87903 1.74237 1.24667 1.43675 0.90096 0.90835 0.93341 0.90258 0.91658 0.88892 0.95374 0.96111 0.92539 0.90902 0.89967 0.91066 0.88507 0.89505 0.88115 0.87194 0.92783 0.90145 0.91826 0.91242 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.65 8.65 71.98 0.62 -4.03 16 2 C 0.09 2.45 3.91 30.63 0.12 2.57 16 3 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 4 C -0.13 -4.01 4.63 30.68 0.14 -3.87 16 5 C -0.10 -3.65 1.74 -11.42 -0.02 -3.67 16 6 C 0.52 21.88 6.63 87.66 0.58 22.46 16 7 O -0.59 -27.29 15.85 -3.04 -0.05 -27.33 16 8 N -0.60 -24.94 2.47 -826.15 -2.04 -26.99 16 9 C 0.25 11.69 5.00 85.63 0.43 12.12 16 10 C -0.52 -25.59 7.61 25.60 0.19 -25.39 16 11 H 0.05 2.56 7.44 -2.91 -0.02 2.54 16 12 C 0.03 1.53 5.46 84.66 0.46 1.99 16 13 N -0.92 -48.49 13.29 21.45 0.28 -48.21 16 14 Si 0.94 40.47 29.54 68.60 2.03 42.50 16 15 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 16 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 17 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 18 C 0.15 5.57 5.68 86.38 0.49 6.06 16 19 C -0.17 -6.08 6.00 -10.79 -0.06 -6.15 16 20 C -0.17 -5.31 10.18 30.62 0.31 -5.00 16 21 C -0.16 -4.31 10.25 30.62 0.31 -4.00 16 22 C -0.13 -4.86 4.69 30.69 0.14 -4.71 16 23 C 0.09 2.93 2.93 30.63 0.09 3.02 16 24 H 0.06 2.02 6.34 -2.39 -0.02 2.01 16 25 C -0.14 -3.94 9.56 71.98 0.69 -3.25 16 26 O -0.39 -11.98 10.24 -148.98 -1.53 -13.51 16 27 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.05 1.45 4.98 -2.39 -0.01 1.43 16 30 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.06 2.25 7.76 -2.38 -0.02 2.23 16 32 H 0.09 3.63 4.31 -2.39 -0.01 3.62 16 33 H 0.03 1.36 5.92 -2.39 -0.01 1.34 16 34 H 0.02 1.02 7.81 -2.39 -0.02 1.00 16 35 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 36 H 0.07 2.64 7.54 -2.39 -0.02 2.62 16 37 H 0.08 2.80 7.56 -2.38 -0.02 2.79 16 38 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 39 H 0.10 2.92 8.03 -2.39 -0.02 2.90 16 40 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.11 2.56 8.14 -2.38 -0.02 2.54 16 43 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.08 3.38 5.87 -2.39 -0.01 3.37 16 45 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -57.49 365.22 4.14 -53.35 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: 0.94 Total: 32.01 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 4.50 Total: -11.83 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -1.76 Total: -75.19 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -1.57 Total: -40.84 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -57.49 4.14 -53.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094107453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.855 kcal (2) G-P(sol) polarization free energy of solvation -57.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds