Wall clock time and date at job start Tue Mar 31 2020 07:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.48046 * 2 1 4 4 C 1.53095 * 109.48357 * 239.97525 * 2 1 3 5 5 C 1.53174 * 109.16504 * 182.39610 * 4 2 1 6 6 C 1.50695 * 109.54579 * 176.84828 * 5 4 2 7 7 O 1.21284 * 119.99736 * 337.32209 * 6 5 4 8 8 N 1.34779 * 120.00099 * 157.04780 * 6 5 4 9 9 C 1.46504 * 120.00011 * 356.20966 * 8 6 5 10 10 C 1.50696 * 109.46950 * 94.69231 * 9 8 6 11 11 H 1.08008 * 120.00496 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00114 * 179.97438 * 10 9 8 13 13 N 1.31522 * 119.99750 * 359.97438 * 12 10 9 14 14 Si 1.86791 * 120.00333 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47242 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47414 * 119.99781 * 14 12 10 17 17 H 1.48502 * 109.47161 * 239.99807 * 14 12 10 18 18 C 1.46505 * 119.99871 * 176.20615 * 8 6 5 19 19 C 1.53005 * 109.46519 * 86.29639 * 18 8 6 20 20 C 1.53005 * 117.49666 * 245.64944 * 19 18 8 21 21 C 1.53000 * 60.00053 * 252.51596 * 20 19 18 22 22 C 1.53183 * 109.11117 * 56.93526 * 5 4 2 23 23 C 1.53110 * 109.15555 * 303.15604 * 22 5 4 24 24 H 1.08997 * 109.48126 * 177.49983 * 23 22 5 25 25 C 1.53003 * 109.41219 * 297.48424 * 23 22 5 26 26 O 1.42903 * 109.48823 * 57.47053 * 23 22 5 27 27 H 1.08996 * 109.46756 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47160 * 300.02704 * 1 2 3 29 29 H 1.09004 * 109.46815 * 60.02796 * 1 2 3 30 30 H 1.08999 * 109.51766 * 62.49168 * 4 2 1 31 31 H 1.08996 * 109.52203 * 302.30621 * 4 2 1 32 32 H 1.09006 * 109.54490 * 297.02725 * 5 4 2 33 33 H 1.08996 * 109.46701 * 214.69196 * 9 8 6 34 34 H 1.08998 * 109.46860 * 334.69112 * 9 8 6 35 35 H 0.96994 * 119.99592 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.47169 * 206.29305 * 18 8 6 37 37 H 1.09002 * 109.47081 * 326.29998 * 18 8 6 38 38 H 1.08993 * 115.55572 * 31.35744 * 19 18 8 39 39 H 1.09001 * 117.49872 * 359.97438 * 20 19 18 40 40 H 1.08993 * 117.50287 * 145.02476 * 20 19 18 41 41 H 1.09004 * 117.49580 * 252.51849 * 21 20 19 42 42 H 1.09000 * 117.50455 * 107.49080 * 21 20 19 43 43 H 1.08999 * 109.51957 * 62.96344 * 22 5 4 44 44 H 1.08995 * 109.52325 * 183.15870 * 22 5 4 45 45 H 1.09000 * 109.46691 * 179.97438 * 25 23 22 46 46 H 1.08997 * 109.47170 * 299.99116 * 25 23 22 47 47 H 1.08998 * 109.47381 * 59.99510 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0277 0.0000 4 6 2.0407 -0.7222 -1.2496 5 6 3.5712 -0.7705 -1.2123 6 6 4.0801 -1.5471 -2.3993 7 8 3.3575 -2.3462 -2.9562 8 7 5.3365 -1.3496 -2.8453 9 6 6.1794 -0.3216 -2.2296 10 6 7.0353 -0.9485 -1.1594 11 1 6.9594 -2.0070 -0.9582 12 6 7.9160 -0.1711 -0.4376 13 7 8.0096 1.1175 -0.6836 14 14 8.9775 -0.9482 0.8885 15 1 8.6858 -2.4022 0.9672 16 1 10.4109 -0.7488 0.5554 17 1 8.6801 -0.3117 2.1968 18 6 5.8594 -2.1631 -3.9459 19 6 5.4719 -1.5241 -5.2810 20 6 4.5081 -2.2992 -6.1818 21 6 5.9869 -2.1900 -6.5587 22 6 4.0199 -1.4584 0.0807 23 6 3.4310 -0.7090 1.2790 24 1 3.7104 -1.2199 2.2003 25 6 3.9761 0.7205 1.3026 26 8 2.0068 -0.6741 1.1664 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5142 0.8897 29 1 -0.3633 0.5134 -0.8903 30 1 1.7148 -0.1842 -2.1398 31 1 1.6446 -1.7374 -1.2710 32 1 3.9689 0.2440 -1.2426 33 1 6.8188 0.1271 -2.9897 34 1 5.5479 0.4479 -1.7855 35 1 8.6295 1.6643 -0.1761 36 1 6.9454 -2.2196 -3.8718 37 1 5.4384 -3.1668 -3.8877 38 1 5.3930 -0.4370 -5.2767 39 1 4.1504 -3.2645 -5.8234 40 1 3.7948 -1.7221 -6.7701 41 1 6.2465 -1.5408 -7.3949 42 1 6.6018 -3.0831 -6.4481 43 1 3.6649 -2.4889 0.0871 44 1 5.1081 -1.4465 0.1409 45 1 3.5570 1.2550 2.1551 46 1 5.0623 0.6937 1.3885 47 1 3.6969 1.2311 0.3810 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094107454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:43 Heat of formation + Delta-G solvation = -75.179797 kcal Electronic energy + Delta-G solvation = -25880.690098 eV Core-core repulsion = 22449.651139 eV Total energy + Delta-G solvation = -3431.038958 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.10188 -38.56525 -36.84943 -34.77738 -33.16818 -32.97616 -32.51167 -29.26330 -27.86573 -26.43657 -26.24359 -23.45853 -22.80578 -22.12170 -22.04051 -20.39354 -19.05820 -18.18222 -16.60568 -16.54303 -15.95109 -15.87370 -15.33320 -14.74877 -14.60981 -14.24859 -14.10772 -13.84728 -13.51151 -13.03652 -12.67141 -12.52719 -12.36664 -12.28728 -11.95435 -11.81151 -11.59002 -11.55166 -11.29705 -11.26047 -11.22485 -10.95538 -10.92045 -10.66472 -10.62163 -10.26813 -10.20704 -10.08357 -9.74169 -9.70081 -9.56688 -9.28597 -8.74334 -8.55639 -7.72675 -6.23891 -4.30217 3.16281 3.26369 3.29121 3.42425 3.83336 4.07429 4.19995 4.28286 5.01476 5.07989 5.11576 5.15049 5.16050 5.25908 5.31705 5.37636 5.44779 5.57321 5.69613 5.74291 5.77775 5.78421 5.81813 5.85553 5.88651 6.04304 6.14137 6.16698 6.19085 6.23967 6.26855 6.31005 6.38645 6.41691 6.54463 6.58906 6.60847 6.74088 6.80237 6.85699 7.16769 7.53278 7.63382 7.70641 8.00470 8.36258 8.75010 9.04741 9.36701 10.82345 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.009136 B = 0.008103 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3064.006917 B = 3454.563754 C = 5987.410591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.084 3.916 3 H 0.059 0.941 4 C -0.129 4.129 5 C -0.101 4.101 6 C 0.521 3.479 7 O -0.570 6.570 8 N -0.593 5.593 9 C 0.235 3.765 10 C -0.533 4.533 11 H 0.062 0.938 12 C 0.068 3.932 13 N -0.887 5.887 14 Si 0.888 3.112 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.281 1.281 18 C 0.153 3.847 19 C -0.158 4.158 20 C -0.171 4.171 21 C -0.183 4.183 22 C -0.143 4.143 23 C 0.093 3.907 24 H 0.099 0.901 25 C -0.182 4.182 26 O -0.381 6.381 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.033 0.967 34 H 0.040 0.960 35 H 0.265 0.735 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.112 0.888 45 H 0.053 0.947 46 H 0.079 0.921 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.674 -0.874 -1.741 7.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.026 3.974 3 H 0.077 0.923 4 C -0.167 4.167 5 C -0.122 4.122 6 C 0.309 3.691 7 O -0.450 6.450 8 N -0.322 5.322 9 C 0.116 3.884 10 C -0.572 4.572 11 H 0.081 0.919 12 C -0.135 4.135 13 N -0.525 5.525 14 Si 0.716 3.284 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.207 1.207 18 C 0.029 3.971 19 C -0.177 4.177 20 C -0.208 4.208 21 C -0.220 4.220 22 C -0.181 4.181 23 C 0.036 3.964 24 H 0.117 0.883 25 C -0.240 4.240 26 O -0.300 6.300 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.081 0.919 44 H 0.131 0.869 45 H 0.072 0.928 46 H 0.098 0.902 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.042 -1.188 -1.836 8.334 hybrid contribution 1.097 -0.047 0.475 1.196 sum -6.946 -1.235 -1.362 7.185 Atomic orbital electron populations 1.21737 0.93608 1.02668 1.01878 1.22050 0.94410 0.95488 0.85426 0.92288 1.22062 0.94608 1.02439 0.97639 1.21272 0.95527 1.01177 0.94187 1.20420 0.81593 0.82744 0.84312 1.90573 1.56762 1.38065 1.59645 1.48192 1.13312 1.37387 1.33328 1.19487 0.89726 0.85927 0.93298 1.21472 1.21711 0.95436 1.18532 0.91949 1.24905 0.96687 0.94728 0.97217 1.69929 1.36875 1.04858 1.40886 0.86582 0.80442 0.79730 0.81656 1.19583 1.20872 1.20702 1.20811 0.99006 0.93818 0.83485 1.22763 1.04011 0.99143 0.91828 1.22911 0.92118 1.02305 1.03473 1.22909 0.97357 1.03032 0.98715 1.22272 1.04732 0.98747 0.92338 1.22139 0.79988 0.95940 0.98384 0.88303 1.22412 1.03073 0.96694 1.01781 1.87903 1.21477 1.77800 1.42855 0.91979 0.92201 0.91414 0.91477 0.90355 0.88426 0.94851 0.94186 0.92569 0.89942 0.91341 0.88087 0.88788 0.89658 0.89258 0.88996 0.91912 0.86944 0.92800 0.90243 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.57 37.16 0.36 -1.35 16 2 C 0.08 1.23 2.94 -26.68 -0.08 1.15 16 3 H 0.06 0.85 6.34 -51.92 -0.33 0.52 16 4 C -0.13 -2.12 4.27 -26.59 -0.11 -2.23 16 5 C -0.10 -1.85 1.61 -91.59 -0.15 -1.99 16 6 C 0.52 10.73 6.79 -10.99 -0.07 10.65 16 7 O -0.57 -12.69 15.69 5.55 0.09 -12.61 16 8 N -0.59 -12.17 2.46 -175.05 -0.43 -12.60 16 9 C 0.24 5.31 4.96 -5.19 -0.03 5.28 16 10 C -0.53 -12.89 7.26 -34.44 -0.25 -13.14 16 11 H 0.06 1.55 7.70 -52.48 -0.40 1.15 16 12 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -23.08 13.29 55.43 0.74 -22.34 16 14 Si 0.89 19.57 29.54 -169.99 -5.02 14.55 16 15 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 C 0.15 2.83 5.64 -4.04 -0.02 2.81 16 19 C -0.16 -2.61 5.99 -90.61 -0.54 -3.15 16 20 C -0.17 -2.55 10.18 -26.73 -0.27 -2.82 16 21 C -0.18 -2.48 10.25 -26.73 -0.27 -2.75 16 22 C -0.14 -2.60 4.89 -26.58 -0.13 -2.73 16 23 C 0.09 1.51 3.91 -26.67 -0.10 1.40 16 24 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 25 C -0.18 -2.91 8.65 37.16 0.32 -2.59 16 26 O -0.38 -6.20 10.24 -35.23 -0.36 -6.57 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.39 7.78 -51.93 -0.40 0.98 16 32 H 0.10 1.84 4.52 -51.93 -0.23 1.61 16 33 H 0.03 0.81 8.11 -51.93 -0.42 0.39 16 34 H 0.04 0.93 5.75 -51.93 -0.30 0.63 16 35 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 36 H 0.08 1.53 8.04 -51.93 -0.42 1.11 16 37 H 0.07 1.29 7.34 -51.93 -0.38 0.91 16 38 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 39 H 0.09 1.46 8.04 -51.93 -0.42 1.04 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.11 2.27 5.66 -51.93 -0.29 1.98 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.06 0.99 4.98 -51.93 -0.26 0.73 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -26.73 365.16 -9.01 -35.74 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -8.07 Total: 8.18 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -1.46 Total: -9.85 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.31 Total: -34.94 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.27 Total: -19.17 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -26.73 -9.01 -35.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094107454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.442 kcal (2) G-P(sol) polarization free energy of solvation -26.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds