Wall clock time and date at job start Tue Mar 31 2020 07:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.48046 * 2 1 4 4 C 1.53095 * 109.48357 * 239.97525 * 2 1 3 5 5 C 1.53174 * 109.16504 * 182.39610 * 4 2 1 6 6 C 1.50695 * 109.54579 * 176.84828 * 5 4 2 7 7 O 1.21284 * 119.99736 * 337.32209 * 6 5 4 8 8 N 1.34779 * 120.00099 * 157.04780 * 6 5 4 9 9 C 1.46504 * 120.00011 * 356.20966 * 8 6 5 10 10 C 1.50696 * 109.46950 * 94.69231 * 9 8 6 11 11 H 1.08008 * 120.00496 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00114 * 179.97438 * 10 9 8 13 13 N 1.31522 * 119.99750 * 359.97438 * 12 10 9 14 14 Si 1.86791 * 120.00333 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47242 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47414 * 119.99781 * 14 12 10 17 17 H 1.48502 * 109.47161 * 239.99807 * 14 12 10 18 18 C 1.46505 * 119.99871 * 176.20615 * 8 6 5 19 19 C 1.53005 * 109.46519 * 86.29639 * 18 8 6 20 20 C 1.53005 * 117.49666 * 245.64944 * 19 18 8 21 21 C 1.53000 * 60.00053 * 252.51596 * 20 19 18 22 22 C 1.53183 * 109.11117 * 56.93526 * 5 4 2 23 23 C 1.53110 * 109.15555 * 303.15604 * 22 5 4 24 24 H 1.08997 * 109.48126 * 177.49983 * 23 22 5 25 25 C 1.53003 * 109.41219 * 297.48424 * 23 22 5 26 26 O 1.42903 * 109.48823 * 57.47053 * 23 22 5 27 27 H 1.08996 * 109.46756 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47160 * 300.02704 * 1 2 3 29 29 H 1.09004 * 109.46815 * 60.02796 * 1 2 3 30 30 H 1.08999 * 109.51766 * 62.49168 * 4 2 1 31 31 H 1.08996 * 109.52203 * 302.30621 * 4 2 1 32 32 H 1.09006 * 109.54490 * 297.02725 * 5 4 2 33 33 H 1.08996 * 109.46701 * 214.69196 * 9 8 6 34 34 H 1.08998 * 109.46860 * 334.69112 * 9 8 6 35 35 H 0.96994 * 119.99592 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.47169 * 206.29305 * 18 8 6 37 37 H 1.09002 * 109.47081 * 326.29998 * 18 8 6 38 38 H 1.08993 * 115.55572 * 31.35744 * 19 18 8 39 39 H 1.09001 * 117.49872 * 359.97438 * 20 19 18 40 40 H 1.08993 * 117.50287 * 145.02476 * 20 19 18 41 41 H 1.09004 * 117.49580 * 252.51849 * 21 20 19 42 42 H 1.09000 * 117.50455 * 107.49080 * 21 20 19 43 43 H 1.08999 * 109.51957 * 62.96344 * 22 5 4 44 44 H 1.08995 * 109.52325 * 183.15870 * 22 5 4 45 45 H 1.09000 * 109.46691 * 179.97438 * 25 23 22 46 46 H 1.08997 * 109.47170 * 299.99116 * 25 23 22 47 47 H 1.08998 * 109.47381 * 59.99510 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0277 0.0000 4 6 2.0407 -0.7222 -1.2496 5 6 3.5712 -0.7705 -1.2123 6 6 4.0801 -1.5471 -2.3993 7 8 3.3575 -2.3462 -2.9562 8 7 5.3365 -1.3496 -2.8453 9 6 6.1794 -0.3216 -2.2296 10 6 7.0353 -0.9485 -1.1594 11 1 6.9594 -2.0070 -0.9582 12 6 7.9160 -0.1711 -0.4376 13 7 8.0096 1.1175 -0.6836 14 14 8.9775 -0.9482 0.8885 15 1 8.6858 -2.4022 0.9672 16 1 10.4109 -0.7488 0.5554 17 1 8.6801 -0.3117 2.1968 18 6 5.8594 -2.1631 -3.9459 19 6 5.4719 -1.5241 -5.2810 20 6 4.5081 -2.2992 -6.1818 21 6 5.9869 -2.1900 -6.5587 22 6 4.0199 -1.4584 0.0807 23 6 3.4310 -0.7090 1.2790 24 1 3.7104 -1.2199 2.2003 25 6 3.9761 0.7205 1.3026 26 8 2.0068 -0.6741 1.1664 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5142 0.8897 29 1 -0.3633 0.5134 -0.8903 30 1 1.7148 -0.1842 -2.1398 31 1 1.6446 -1.7374 -1.2710 32 1 3.9689 0.2440 -1.2426 33 1 6.8188 0.1271 -2.9897 34 1 5.5479 0.4479 -1.7855 35 1 8.6295 1.6643 -0.1761 36 1 6.9454 -2.2196 -3.8718 37 1 5.4384 -3.1668 -3.8877 38 1 5.3930 -0.4370 -5.2767 39 1 4.1504 -3.2645 -5.8234 40 1 3.7948 -1.7221 -6.7701 41 1 6.2465 -1.5408 -7.3949 42 1 6.6018 -3.0831 -6.4481 43 1 3.6649 -2.4889 0.0871 44 1 5.1081 -1.4465 0.1409 45 1 3.5570 1.2550 2.1551 46 1 5.0623 0.6937 1.3885 47 1 3.6969 1.2311 0.3810 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094107454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:42 Heat of formation + Delta-G solvation = -87.674444 kcal Electronic energy + Delta-G solvation = -25881.231906 eV Core-core repulsion = 22449.651139 eV Total energy + Delta-G solvation = -3431.580767 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.58881 -40.01557 -38.19401 -36.49249 -34.57867 -34.39558 -34.20448 -30.53773 -29.60113 -28.02679 -27.55968 -25.10169 -24.43992 -23.37610 -23.19320 -21.73669 -20.41650 -19.79233 -18.47471 -18.11128 -17.50561 -17.20465 -16.73045 -16.41695 -16.08605 -15.64367 -15.43917 -15.29779 -14.90632 -14.47309 -14.33146 -14.04712 -13.77802 -13.59655 -13.46690 -13.30520 -12.92218 -12.84197 -12.79911 -12.68426 -12.56926 -12.56263 -12.36505 -12.23474 -11.96834 -11.89940 -11.69550 -11.57757 -11.31040 -11.15909 -10.87729 -10.68925 -10.53927 -10.17840 -9.45030 -8.17173 -6.28918 1.39876 1.45439 1.53551 1.76001 2.25892 2.44627 2.85203 2.94785 3.13301 3.64760 3.77140 3.79383 3.85681 3.98967 4.00314 4.11800 4.18955 4.25558 4.36164 4.40453 4.41854 4.48577 4.58961 4.66824 4.74625 4.75406 4.81122 4.83603 4.91954 4.92935 4.99748 5.02733 5.06203 5.19018 5.20323 5.25368 5.26090 5.28169 5.31284 5.34028 5.43857 5.69366 5.86078 6.08275 6.36379 6.60625 6.84130 7.32814 7.44532 8.88495 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.009136 B = 0.008103 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3064.006917 B = 3454.563754 C = 5987.410591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.081 3.919 3 H 0.066 0.934 4 C -0.122 4.122 5 C -0.097 4.097 6 C 0.516 3.484 7 O -0.588 6.588 8 N -0.595 5.595 9 C 0.253 3.747 10 C -0.532 4.532 11 H 0.052 0.948 12 C 0.032 3.968 13 N -0.914 5.914 14 Si 0.942 3.058 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.275 1.275 18 C 0.152 3.848 19 C -0.182 4.182 20 C -0.169 4.169 21 C -0.155 4.155 22 C -0.137 4.137 23 C 0.097 3.903 24 H 0.113 0.887 25 C -0.175 4.175 26 O -0.385 6.385 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.015 0.985 34 H 0.033 0.967 35 H 0.267 0.733 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.054 0.946 44 H 0.090 0.910 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.309 -0.794 -1.601 8.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.024 3.976 3 H 0.084 0.916 4 C -0.160 4.160 5 C -0.118 4.118 6 C 0.305 3.695 7 O -0.470 6.470 8 N -0.324 5.324 9 C 0.132 3.868 10 C -0.571 4.571 11 H 0.071 0.929 12 C -0.169 4.169 13 N -0.553 5.553 14 Si 0.768 3.232 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.201 1.201 18 C 0.029 3.971 19 C -0.201 4.201 20 C -0.206 4.206 21 C -0.193 4.193 22 C -0.175 4.175 23 C 0.039 3.961 24 H 0.131 0.869 25 C -0.232 4.232 26 O -0.305 6.305 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.033 0.967 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.115 0.885 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.073 0.927 44 H 0.108 0.892 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.678 -1.115 -1.705 8.914 hybrid contribution 1.292 -0.098 0.377 1.349 sum -7.387 -1.213 -1.328 7.603 Atomic orbital electron populations 1.21746 0.91240 1.03005 1.03450 1.22224 0.96227 0.95232 0.83921 0.91596 1.22027 0.92803 1.02028 0.99158 1.21269 0.97050 1.00247 0.93274 1.20831 0.81347 0.82661 0.84676 1.90552 1.57084 1.38990 1.60388 1.48210 1.13249 1.37111 1.33836 1.19138 0.89257 0.86058 0.92331 1.21523 1.21870 0.94888 1.18799 0.92946 1.25463 0.97611 0.95013 0.98790 1.70005 1.37608 1.05809 1.41865 0.85745 0.78816 0.78893 0.79733 1.19608 1.20888 1.20054 1.20870 0.98618 0.93458 0.84190 1.22602 1.07020 0.98579 0.91928 1.22928 0.93236 1.01579 1.02839 1.23025 0.96303 1.02934 0.97010 1.22177 1.03309 0.98707 0.93357 1.22116 0.80184 0.95900 0.97860 0.86887 1.22323 1.01726 0.96715 1.02422 1.87912 1.21043 1.78087 1.43437 0.92267 0.90949 0.89566 0.90748 0.91754 0.89067 0.96661 0.94939 0.92423 0.90401 0.91959 0.89186 0.89623 0.88519 0.87174 0.87873 0.92696 0.89185 0.90799 0.92259 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.57 71.98 0.69 -2.28 16 2 C 0.08 2.26 2.94 30.63 0.09 2.35 16 3 H 0.07 1.76 6.34 -2.38 -0.02 1.75 16 4 C -0.12 -3.92 4.27 30.68 0.13 -3.79 16 5 C -0.10 -3.61 1.61 -11.42 -0.02 -3.63 16 6 C 0.52 21.63 6.79 87.66 0.59 22.22 16 7 O -0.59 -26.52 15.69 -3.04 -0.05 -26.57 16 8 N -0.60 -25.07 2.46 -826.14 -2.03 -27.10 16 9 C 0.25 11.72 4.96 85.63 0.42 12.14 16 10 C -0.53 -26.18 7.26 25.60 0.19 -26.00 16 11 H 0.05 2.66 7.70 -2.91 -0.02 2.63 16 12 C 0.03 1.60 5.46 84.65 0.46 2.07 16 13 N -0.91 -47.84 13.29 21.45 0.28 -47.56 16 14 Si 0.94 40.09 29.54 68.60 2.03 42.12 16 15 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 16 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 17 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 18 C 0.15 5.74 5.64 86.38 0.49 6.23 16 19 C -0.18 -5.96 5.99 -10.79 -0.06 -6.03 16 20 C -0.17 -4.84 10.18 30.60 0.31 -4.53 16 21 C -0.16 -3.92 10.25 30.60 0.31 -3.61 16 22 C -0.14 -5.03 4.89 30.69 0.15 -4.88 16 23 C 0.10 3.05 3.91 30.63 0.12 3.17 16 24 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 25 C -0.17 -5.42 8.65 71.98 0.62 -4.80 16 26 O -0.39 -11.93 10.24 -148.98 -1.53 -13.46 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.06 2.25 7.78 -2.39 -0.02 2.24 16 32 H 0.09 3.50 4.52 -2.38 -0.01 3.49 16 33 H 0.02 0.76 8.11 -2.39 -0.02 0.74 16 34 H 0.03 1.56 5.75 -2.39 -0.01 1.55 16 35 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 36 H 0.08 2.95 8.04 -2.39 -0.02 2.93 16 37 H 0.06 2.40 7.34 -2.39 -0.02 2.39 16 38 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.09 2.60 8.04 -2.39 -0.02 2.59 16 40 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 42 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.09 3.72 5.66 -2.39 -0.01 3.70 16 45 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.06 1.79 4.98 -2.39 -0.01 1.77 16 Total: -1.00 -56.45 365.16 4.14 -52.32 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: 0.94 Total: 31.61 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 4.50 Total: -11.36 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -1.75 Total: -74.66 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -1.57 Total: -40.02 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Total: -56.45 4.14 -52.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094107454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.359 kcal (2) G-P(sol) polarization free energy of solvation -56.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds