Wall clock time and date at job start Tue Mar 31 2020 07:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.48428 * 2 1 4 4 C 1.53092 * 109.47921 * 120.01951 * 2 1 3 5 5 C 1.53178 * 109.16153 * 62.38635 * 4 2 1 6 6 C 1.50703 * 109.54425 * 176.84812 * 5 4 2 7 7 O 1.21287 * 119.99706 * 346.50735 * 6 5 4 8 8 N 1.34782 * 120.00022 * 166.23108 * 6 5 4 9 9 C 1.37091 * 119.99836 * 184.51772 * 8 6 5 10 10 H 1.08003 * 119.99900 * 134.56873 * 9 8 6 11 11 C 1.38957 * 120.00172 * 314.57292 * 9 8 6 12 12 N 1.31409 * 120.00026 * 162.87400 * 11 9 8 13 13 Si 1.86801 * 119.99579 * 342.87318 * 11 9 8 14 14 H 1.48493 * 109.46799 * 95.77840 * 13 11 9 15 15 H 1.48503 * 109.46887 * 215.77636 * 13 11 9 16 16 H 1.48496 * 109.47346 * 335.77831 * 13 11 9 17 17 C 1.46495 * 119.99699 * 4.51126 * 8 6 5 18 18 C 1.54266 * 110.03340 * 241.92409 * 17 8 6 19 19 C 1.54892 * 104.19679 * 217.10924 * 18 17 8 20 20 C 1.54895 * 102.74795 * 37.94212 * 19 18 17 21 21 C 1.53880 * 110.02782 * 124.75939 * 17 8 6 22 22 C 1.53175 * 109.03786 * 56.97805 * 5 4 2 23 23 C 1.53084 * 109.16514 * 303.02143 * 22 5 4 24 24 H 1.08999 * 109.48258 * 297.62160 * 23 22 5 25 25 C 1.52999 * 109.48190 * 177.58786 * 23 22 5 26 26 O 1.42902 * 109.49162 * 239.96691 * 2 1 3 27 27 H 1.08996 * 109.47435 * 304.70886 * 1 2 3 28 28 H 1.09004 * 109.46587 * 64.70505 * 1 2 3 29 29 H 1.08994 * 109.47158 * 184.69956 * 1 2 3 30 30 H 1.09001 * 109.52120 * 302.48560 * 4 2 1 31 31 H 1.08999 * 109.57848 * 182.31743 * 4 2 1 32 32 H 1.09004 * 109.54405 * 297.02009 * 5 4 2 33 33 H 0.97001 * 119.99879 * 179.97438 * 12 11 9 34 34 H 1.08998 * 110.02212 * 3.37005 * 17 8 6 35 35 H 1.09003 * 110.48621 * 335.78583 * 18 17 8 36 36 H 1.08997 * 110.49053 * 98.43514 * 18 17 8 37 37 H 1.08994 * 110.75786 * 279.62870 * 19 18 17 38 38 H 1.09001 * 110.91433 * 156.32946 * 19 18 17 39 39 H 1.08998 * 110.48825 * 203.37673 * 20 19 18 40 40 H 1.09007 * 110.59420 * 80.79244 * 20 19 18 41 41 H 1.09000 * 110.03171 * 238.56521 * 21 17 8 42 42 H 1.09004 * 110.03137 * 359.95381 * 21 17 8 43 43 H 1.09008 * 109.52085 * 62.92685 * 22 5 4 44 44 H 1.09004 * 109.52404 * 183.11461 * 22 5 4 45 45 H 1.08999 * 109.47382 * 300.06111 * 25 23 22 46 46 H 1.08999 * 109.47411 * 60.05660 * 25 23 22 47 47 H 1.09004 * 109.47154 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7221 1.2497 5 6 1.5759 -2.1812 1.2123 6 6 2.1383 -2.9199 2.3994 7 8 3.0269 -2.4222 3.0580 8 7 1.6500 -4.1312 2.7325 9 6 2.0959 -4.7622 3.8649 10 1 1.3900 -5.2254 4.5385 11 6 3.4560 -4.8059 4.1462 12 7 3.8669 -5.0975 5.3599 13 14 4.7001 -4.4501 2.7990 14 1 5.1093 -3.0243 2.8672 15 1 5.8919 -5.3165 2.9845 16 1 4.0883 -4.7267 1.4745 17 6 0.6427 -4.7733 1.8845 18 6 -0.6634 -4.9796 2.6791 19 6 -1.1994 -6.3449 2.1812 20 6 0.0947 -7.1790 2.0121 21 6 1.1247 -6.1718 1.4604 22 6 2.0768 -2.8321 -0.0806 23 6 1.5650 -2.0286 -1.2789 24 1 0.4754 -2.0553 -1.2958 25 6 2.1106 -2.6374 -2.5721 26 8 2.0068 -0.6742 -1.1663 27 1 -0.3634 0.5851 0.8448 28 1 -0.3633 0.4391 -0.9292 29 1 -0.3633 -1.0241 0.0842 30 1 1.6418 -0.2356 2.1399 31 1 3.1297 -0.6872 1.2723 32 1 0.4869 -2.2180 1.2425 33 1 4.8163 -5.1283 5.5561 34 1 0.4516 -4.1611 1.0031 35 1 -0.4571 -5.0179 3.7488 36 1 -1.3757 -4.1856 2.4552 37 1 -1.7143 -6.2330 1.2271 38 1 -1.8572 -6.7984 2.9226 39 1 -0.0643 -7.9900 1.3014 40 1 0.4245 -7.5743 2.9730 41 1 1.1667 -6.2384 0.3732 42 1 2.1085 -6.3723 1.8849 43 1 3.1669 -2.8398 -0.0860 44 1 1.7042 -3.8547 -0.1418 45 1 3.2002 -2.6110 -2.5547 46 1 1.7736 -3.6704 -2.6579 47 1 1.7464 -2.0648 -3.4252 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094162393.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:46 Heat of formation + Delta-G solvation = -86.783166 kcal Electronic energy + Delta-G solvation = -26687.957705 eV Core-core repulsion = 23256.415587 eV Total energy + Delta-G solvation = -3431.542118 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.34899 -38.77438 -37.04662 -33.70736 -33.42014 -33.20910 -31.69545 -29.45163 -28.20361 -27.18839 -26.51419 -25.28841 -23.09948 -22.24138 -20.31690 -20.16951 -19.38869 -18.75229 -17.09010 -16.27060 -16.12537 -15.90482 -15.19078 -14.93217 -14.62241 -14.31796 -14.10828 -13.48748 -13.38586 -13.19005 -12.86305 -12.70541 -12.59341 -12.45619 -12.03999 -11.97649 -11.87655 -11.60452 -11.51338 -11.22903 -10.97498 -10.80190 -10.76081 -10.65706 -10.59029 -10.55777 -10.16785 -9.98200 -9.97130 -9.91554 -9.79585 -9.38401 -8.53260 -8.32148 -7.51524 -6.14156 -3.94213 3.31168 3.47771 3.68656 3.83029 3.86298 4.39284 4.59692 4.82021 4.90855 5.00533 5.04918 5.09888 5.10895 5.18032 5.26611 5.31707 5.39511 5.44820 5.50865 5.58342 5.61707 5.68158 5.76786 5.81871 5.91449 5.94030 5.99766 6.05308 6.07344 6.09259 6.11541 6.12528 6.21193 6.31458 6.32628 6.34472 6.45684 6.48753 6.62768 6.74013 6.84403 6.97087 7.37637 7.89720 8.06964 8.83594 8.96801 9.48049 9.87034 10.90943 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013488 B = 0.007526 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.405942 B = 3719.714141 C = 4601.841714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.088 3.912 3 H 0.101 0.899 4 C -0.127 4.127 5 C -0.105 4.105 6 C 0.458 3.542 7 O -0.543 6.543 8 N -0.458 5.458 9 C -0.340 4.340 10 H 0.093 0.907 11 C 0.091 3.909 12 N -0.872 5.872 13 Si 0.913 3.087 14 H -0.259 1.259 15 H -0.313 1.313 16 H -0.280 1.280 17 C 0.123 3.877 18 C -0.132 4.132 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.130 4.130 22 C -0.146 4.146 23 C 0.087 3.913 24 H 0.060 0.940 25 C -0.144 4.144 26 O -0.377 6.377 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.270 0.730 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.345 3.018 -13.622 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.030 3.970 3 H 0.119 0.881 4 C -0.165 4.165 5 C -0.127 4.127 6 C 0.247 3.753 7 O -0.425 6.425 8 N -0.180 5.180 9 C -0.465 4.465 10 H 0.111 0.889 11 C -0.117 4.117 12 N -0.507 5.507 13 Si 0.744 3.256 14 H -0.185 1.185 15 H -0.243 1.243 16 H -0.205 1.205 17 C 0.019 3.981 18 C -0.170 4.170 19 C -0.159 4.159 20 C -0.155 4.155 21 C -0.168 4.168 22 C -0.184 4.184 23 C 0.029 3.971 24 H 0.078 0.922 25 C -0.201 4.201 26 O -0.296 6.296 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.644 3.313 -13.269 16.179 hybrid contribution 0.451 -0.105 -0.281 0.542 sum -8.192 3.209 -13.550 16.156 Atomic orbital electron populations 1.22469 0.96677 1.02785 1.02374 1.22205 0.93231 0.96270 0.85277 0.88122 1.21972 1.02884 0.94055 0.97624 1.21337 1.00835 0.95908 0.94597 1.20301 0.86078 0.81980 0.86897 1.90500 1.30647 1.67182 1.54169 1.43756 1.37393 1.14190 1.22624 1.18647 0.91960 1.37642 0.98298 0.88927 1.25339 0.97969 0.92477 0.95951 1.69734 1.16082 1.45813 1.19068 0.86309 0.79393 0.78474 0.81389 1.18530 1.24331 1.20537 1.21912 0.89363 0.93970 0.92892 1.22708 0.95933 0.96123 1.02251 1.22424 0.97167 0.96167 1.00122 1.22260 0.94898 0.97141 1.01161 1.22414 1.01126 0.94453 0.98793 1.22376 1.02642 0.99800 0.93573 1.22061 0.97821 0.82357 0.94865 0.92189 1.21763 1.02208 1.00256 0.95921 1.87937 1.74015 1.24439 1.43229 0.91436 0.92104 0.91883 0.90542 0.90197 0.89716 0.92001 0.90653 0.89863 0.92664 0.92288 0.92112 0.92699 0.91167 0.92976 0.89765 0.90813 0.90164 0.91854 0.91139 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.07 8.62 37.16 0.32 -1.75 16 2 C 0.09 1.18 3.91 -26.68 -0.10 1.07 16 3 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 4 C -0.13 -2.12 4.38 -26.59 -0.12 -2.24 16 5 C -0.11 -1.86 1.43 -91.59 -0.13 -1.99 16 6 C 0.46 10.69 5.29 -10.98 -0.06 10.63 16 7 O -0.54 -15.01 11.33 5.55 0.06 -14.95 16 8 N -0.46 -10.59 2.07 -106.54 -0.22 -10.81 16 9 C -0.34 -9.29 8.02 -14.93 -0.12 -9.41 16 10 H 0.09 2.67 7.04 -52.48 -0.37 2.30 16 11 C 0.09 2.66 4.91 -17.47 -0.09 2.58 16 12 N -0.87 -26.73 13.96 55.50 0.77 -25.95 16 13 Si 0.91 24.67 24.71 -169.99 -4.20 20.47 16 14 H -0.26 -7.45 6.37 56.52 0.36 -7.09 16 15 H -0.31 -8.39 7.11 56.52 0.40 -7.99 16 16 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 17 C 0.12 2.23 2.46 -66.81 -0.16 2.06 16 18 C -0.13 -2.15 6.42 -25.07 -0.16 -2.31 16 19 C -0.12 -1.65 6.91 -24.73 -0.17 -1.82 16 20 C -0.12 -1.76 6.83 -25.07 -0.17 -1.93 16 21 C -0.13 -2.25 6.24 -25.61 -0.16 -2.41 16 22 C -0.15 -2.36 4.32 -26.60 -0.12 -2.47 16 23 C 0.09 1.15 2.94 -26.69 -0.08 1.07 16 24 H 0.06 0.71 6.45 -51.93 -0.34 0.38 16 25 C -0.14 -1.63 9.56 37.16 0.36 -1.27 16 26 O -0.38 -5.52 10.24 -35.23 -0.36 -5.88 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.72 5.01 -51.93 -0.26 0.46 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.08 1.52 7.85 -51.93 -0.41 1.12 16 32 H 0.08 1.33 5.68 -51.93 -0.30 1.04 16 33 H 0.27 7.88 8.31 -40.82 -0.34 7.54 16 34 H 0.08 1.20 4.25 -51.93 -0.22 0.98 16 35 H 0.08 1.60 6.59 -51.93 -0.34 1.26 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.76 7.19 -51.93 -0.37 1.39 16 43 H 0.07 1.37 8.14 -51.92 -0.42 0.94 16 44 H 0.08 1.24 5.92 -51.93 -0.31 0.93 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 343.42 15.07 5.18 5.18 Total: -1.00 -32.66 343.42 -7.74 -40.40 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -8.01 Total: 1.76 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -0.96 Total: -10.20 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.55 Total: -36.77 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.30 Total: -20.83 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -4.20 Total: 20.47 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.66 -7.74 -40.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094162393.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.383 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds