Wall clock time and date at job start Tue Mar 31 2020 07:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.48428 * 2 1 4 4 C 1.53092 * 109.47921 * 120.01951 * 2 1 3 5 5 C 1.53178 * 109.16153 * 62.38635 * 4 2 1 6 6 C 1.50703 * 109.54425 * 176.84812 * 5 4 2 7 7 O 1.21287 * 119.99706 * 346.50735 * 6 5 4 8 8 N 1.34782 * 120.00022 * 166.23108 * 6 5 4 9 9 C 1.37091 * 119.99836 * 184.51772 * 8 6 5 10 10 H 1.08003 * 119.99900 * 134.56873 * 9 8 6 11 11 C 1.38957 * 120.00172 * 314.57292 * 9 8 6 12 12 N 1.31409 * 120.00026 * 162.87400 * 11 9 8 13 13 Si 1.86801 * 119.99579 * 342.87318 * 11 9 8 14 14 H 1.48493 * 109.46799 * 95.77840 * 13 11 9 15 15 H 1.48503 * 109.46887 * 215.77636 * 13 11 9 16 16 H 1.48496 * 109.47346 * 335.77831 * 13 11 9 17 17 C 1.46495 * 119.99699 * 4.51126 * 8 6 5 18 18 C 1.54266 * 110.03340 * 241.92409 * 17 8 6 19 19 C 1.54892 * 104.19679 * 217.10924 * 18 17 8 20 20 C 1.54895 * 102.74795 * 37.94212 * 19 18 17 21 21 C 1.53880 * 110.02782 * 124.75939 * 17 8 6 22 22 C 1.53175 * 109.03786 * 56.97805 * 5 4 2 23 23 C 1.53084 * 109.16514 * 303.02143 * 22 5 4 24 24 H 1.08999 * 109.48258 * 297.62160 * 23 22 5 25 25 C 1.52999 * 109.48190 * 177.58786 * 23 22 5 26 26 O 1.42902 * 109.49162 * 239.96691 * 2 1 3 27 27 H 1.08996 * 109.47435 * 304.70886 * 1 2 3 28 28 H 1.09004 * 109.46587 * 64.70505 * 1 2 3 29 29 H 1.08994 * 109.47158 * 184.69956 * 1 2 3 30 30 H 1.09001 * 109.52120 * 302.48560 * 4 2 1 31 31 H 1.08999 * 109.57848 * 182.31743 * 4 2 1 32 32 H 1.09004 * 109.54405 * 297.02009 * 5 4 2 33 33 H 0.97001 * 119.99879 * 179.97438 * 12 11 9 34 34 H 1.08998 * 110.02212 * 3.37005 * 17 8 6 35 35 H 1.09003 * 110.48621 * 335.78583 * 18 17 8 36 36 H 1.08997 * 110.49053 * 98.43514 * 18 17 8 37 37 H 1.08994 * 110.75786 * 279.62870 * 19 18 17 38 38 H 1.09001 * 110.91433 * 156.32946 * 19 18 17 39 39 H 1.08998 * 110.48825 * 203.37673 * 20 19 18 40 40 H 1.09007 * 110.59420 * 80.79244 * 20 19 18 41 41 H 1.09000 * 110.03171 * 238.56521 * 21 17 8 42 42 H 1.09004 * 110.03137 * 359.95381 * 21 17 8 43 43 H 1.09008 * 109.52085 * 62.92685 * 22 5 4 44 44 H 1.09004 * 109.52404 * 183.11461 * 22 5 4 45 45 H 1.08999 * 109.47382 * 300.06111 * 25 23 22 46 46 H 1.08999 * 109.47411 * 60.05660 * 25 23 22 47 47 H 1.09004 * 109.47154 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7221 1.2497 5 6 1.5759 -2.1812 1.2123 6 6 2.1383 -2.9199 2.3994 7 8 3.0269 -2.4222 3.0580 8 7 1.6500 -4.1312 2.7325 9 6 2.0959 -4.7622 3.8649 10 1 1.3900 -5.2254 4.5385 11 6 3.4560 -4.8059 4.1462 12 7 3.8669 -5.0975 5.3599 13 14 4.7001 -4.4501 2.7990 14 1 5.1093 -3.0243 2.8672 15 1 5.8919 -5.3165 2.9845 16 1 4.0883 -4.7267 1.4745 17 6 0.6427 -4.7733 1.8845 18 6 -0.6634 -4.9796 2.6791 19 6 -1.1994 -6.3449 2.1812 20 6 0.0947 -7.1790 2.0121 21 6 1.1247 -6.1718 1.4604 22 6 2.0768 -2.8321 -0.0806 23 6 1.5650 -2.0286 -1.2789 24 1 0.4754 -2.0553 -1.2958 25 6 2.1106 -2.6374 -2.5721 26 8 2.0068 -0.6742 -1.1663 27 1 -0.3634 0.5851 0.8448 28 1 -0.3633 0.4391 -0.9292 29 1 -0.3633 -1.0241 0.0842 30 1 1.6418 -0.2356 2.1399 31 1 3.1297 -0.6872 1.2723 32 1 0.4869 -2.2180 1.2425 33 1 4.8163 -5.1283 5.5561 34 1 0.4516 -4.1611 1.0031 35 1 -0.4571 -5.0179 3.7488 36 1 -1.3757 -4.1856 2.4552 37 1 -1.7143 -6.2330 1.2271 38 1 -1.8572 -6.7984 2.9226 39 1 -0.0643 -7.9900 1.3014 40 1 0.4245 -7.5743 2.9730 41 1 1.1667 -6.2384 0.3732 42 1 2.1085 -6.3723 1.8849 43 1 3.1669 -2.8398 -0.0860 44 1 1.7042 -3.8547 -0.1418 45 1 3.2002 -2.6110 -2.5547 46 1 1.7736 -3.6704 -2.6579 47 1 1.7464 -2.0648 -3.4252 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094162393.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:45 Heat of formation + Delta-G solvation = -107.827765 kcal Electronic energy + Delta-G solvation = -26688.870267 eV Core-core repulsion = 23256.415587 eV Total energy + Delta-G solvation = -3432.454680 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.82011 -40.17322 -38.61199 -35.48911 -34.87279 -34.32963 -33.68340 -30.50383 -29.49215 -28.69508 -27.65023 -27.04021 -24.56509 -23.44586 -21.76842 -21.50708 -20.86600 -20.19035 -18.85196 -17.90980 -17.38124 -17.19037 -16.89117 -16.26800 -16.00231 -15.81507 -15.49680 -15.32668 -14.83078 -14.66428 -14.40135 -14.12102 -13.86023 -13.75522 -13.46589 -13.37175 -12.98739 -12.82733 -12.79462 -12.59839 -12.42746 -12.35263 -12.29388 -11.95954 -11.94074 -11.81187 -11.80000 -11.63706 -11.38102 -11.29571 -11.11825 -10.79327 -10.62553 -10.11030 -9.49014 -8.41572 -6.17737 1.15091 1.26549 1.44012 1.93160 2.40965 2.64344 2.84490 3.04727 3.57763 3.67358 3.74700 3.81427 3.88607 3.92314 4.12599 4.16355 4.23349 4.32693 4.37224 4.47254 4.50366 4.51626 4.60912 4.66649 4.74098 4.75926 4.79718 4.84456 4.93316 4.99964 5.01122 5.09026 5.12573 5.15909 5.17090 5.21118 5.29682 5.32519 5.40686 5.41778 5.53995 5.61327 5.72368 5.93717 6.34229 6.80111 6.93408 7.37248 7.89998 8.67157 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013488 B = 0.007526 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.405942 B = 3719.714141 C = 4601.841714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.092 3.908 3 H 0.113 0.887 4 C -0.127 4.127 5 C -0.096 4.096 6 C 0.448 3.552 7 O -0.595 6.595 8 N -0.468 5.468 9 C -0.318 4.318 10 H 0.069 0.931 11 C 0.043 3.957 12 N -0.917 5.917 13 Si 0.959 3.041 14 H -0.291 1.291 15 H -0.313 1.313 16 H -0.259 1.259 17 C 0.115 3.885 18 C -0.133 4.133 19 C -0.108 4.108 20 C -0.116 4.116 21 C -0.133 4.133 22 C -0.144 4.144 23 C 0.089 3.911 24 H 0.089 0.911 25 C -0.144 4.144 26 O -0.390 6.390 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.117 0.883 33 H 0.269 0.731 34 H 0.109 0.891 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.039 0.961 41 H 0.086 0.914 42 H 0.040 0.960 43 H 0.041 0.959 44 H 0.092 0.908 45 H 0.047 0.953 46 H 0.090 0.910 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.742 3.189 -17.563 21.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.035 3.965 3 H 0.131 0.869 4 C -0.165 4.165 5 C -0.117 4.117 6 C 0.240 3.760 7 O -0.480 6.480 8 N -0.189 5.189 9 C -0.446 4.446 10 H 0.086 0.914 11 C -0.160 4.160 12 N -0.556 5.556 13 Si 0.791 3.209 14 H -0.219 1.219 15 H -0.243 1.243 16 H -0.184 1.184 17 C 0.012 3.988 18 C -0.171 4.171 19 C -0.146 4.146 20 C -0.154 4.154 21 C -0.171 4.171 22 C -0.182 4.182 23 C 0.031 3.969 24 H 0.107 0.893 25 C -0.201 4.201 26 O -0.310 6.310 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.135 0.865 33 H 0.078 0.922 34 H 0.126 0.874 35 H 0.061 0.939 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.058 0.942 41 H 0.105 0.895 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.111 0.889 45 H 0.066 0.934 46 H 0.109 0.891 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.079 3.453 -17.251 21.341 hybrid contribution 1.441 -0.109 0.979 1.745 sum -10.638 3.344 -16.273 19.727 Atomic orbital electron populations 1.22429 0.94115 1.03364 1.03837 1.22246 0.95129 0.96128 0.83026 0.86886 1.21978 1.00739 0.94095 0.99729 1.21342 1.02205 0.95585 0.92551 1.21407 0.84940 0.81896 0.87787 1.90468 1.32972 1.68332 1.56234 1.43976 1.38168 1.14512 1.22249 1.18506 0.90959 1.35698 0.99436 0.91370 1.25897 0.99676 0.93387 0.97000 1.69816 1.16115 1.49180 1.20478 0.85546 0.78224 0.76099 0.81013 1.21916 1.24313 1.18352 1.22315 0.88473 0.94633 0.93352 1.22699 0.95712 0.99114 0.99567 1.22409 0.96448 0.93611 1.02085 1.22256 0.95037 0.97757 1.00343 1.22458 0.99385 0.94533 1.00772 1.22415 1.00758 1.01046 0.93986 1.22217 0.99355 0.81229 0.94064 0.89288 1.21807 1.01302 1.01614 0.95359 1.87946 1.74696 1.25122 1.43222 0.90509 0.90273 0.91574 0.90992 0.93815 0.86547 0.92221 0.87374 0.93903 0.89958 0.88637 0.91187 0.89591 0.94195 0.89521 0.94145 0.94047 0.88921 0.93378 0.89142 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 8.62 71.98 0.62 -2.57 16 2 C 0.09 2.22 3.91 30.63 0.12 2.34 16 3 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 4 C -0.13 -4.15 4.38 30.68 0.13 -4.02 16 5 C -0.10 -3.21 1.43 -11.42 -0.02 -3.23 16 6 C 0.45 21.05 5.29 87.66 0.46 21.52 16 7 O -0.59 -34.21 11.33 -3.05 -0.03 -34.24 16 8 N -0.47 -21.69 2.07 -609.37 -1.26 -22.95 16 9 C -0.32 -18.13 8.02 84.04 0.67 -17.45 16 10 H 0.07 4.16 7.04 -2.91 -0.02 4.14 16 11 C 0.04 2.66 4.91 84.93 0.42 3.08 16 12 N -0.92 -59.37 13.96 21.66 0.30 -59.07 16 13 Si 0.96 53.46 24.71 68.60 1.70 55.15 16 14 H -0.29 -17.63 6.37 99.48 0.63 -16.99 16 15 H -0.31 -17.10 7.11 99.48 0.71 -16.39 16 16 H -0.26 -13.23 7.11 99.48 0.71 -12.52 16 17 C 0.12 3.88 2.46 45.72 0.11 3.99 16 18 C -0.13 -3.99 6.42 31.67 0.20 -3.78 16 19 C -0.11 -2.50 6.91 31.89 0.22 -2.28 16 20 C -0.12 -3.21 6.83 31.67 0.22 -2.99 16 21 C -0.13 -4.32 6.24 31.32 0.20 -4.12 16 22 C -0.14 -4.27 4.32 30.68 0.13 -4.14 16 23 C 0.09 1.99 2.94 30.62 0.09 2.08 16 24 H 0.09 1.55 6.45 -2.39 -0.02 1.54 16 25 C -0.14 -2.67 9.56 71.98 0.69 -1.98 16 26 O -0.39 -10.23 10.24 -148.98 -1.52 -11.75 16 27 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.07 1.12 5.01 -2.39 -0.01 1.11 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.04 1.72 7.85 -2.39 -0.02 1.70 16 32 H 0.12 3.18 5.68 -2.38 -0.01 3.17 16 33 H 0.27 16.61 8.31 -92.71 -0.77 15.84 16 34 H 0.11 2.93 4.25 -2.39 -0.01 2.92 16 35 H 0.04 1.64 6.59 -2.39 -0.02 1.62 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.04 1.67 7.19 -2.38 -0.02 1.66 16 43 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 44 H 0.09 2.48 5.92 -2.39 -0.01 2.47 16 45 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 46 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -77.95 343.42 4.32 -73.64 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.87 Total: 12.78 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 4.27 Total: -13.56 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -0.96 Total: -82.02 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -1.56 Total: -46.00 kcal Atomic # 14 Polarization: 53.46 SS G_CDS: 1.70 Total: 55.15 kcal Total: -77.95 4.32 -73.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094162393.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.190 kcal (2) G-P(sol) polarization free energy of solvation -77.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds