Wall clock time and date at job start Tue Mar 31 2020 07:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47265 * 2 1 4 4 C 1.50700 * 109.47251 * 120.00272 * 2 1 3 5 5 O 1.20823 * 119.99829 * 90.72409 * 4 2 1 6 6 O 1.34224 * 120.00198 * 270.44983 * 4 2 1 7 7 C 1.45201 * 117.00222 * 175.53474 * 6 4 2 8 8 C 1.52997 * 109.47275 * 184.65222 * 7 6 4 9 9 C 1.50703 * 115.54610 * 59.15027 * 8 7 6 10 10 H 1.07996 * 120.00125 * 266.95854 * 9 8 7 11 11 C 1.37883 * 119.99794 * 86.96388 * 9 8 7 12 12 N 1.31515 * 120.00065 * 178.99901 * 11 9 8 13 13 Si 1.86796 * 120.00054 * 359.00100 * 11 9 8 14 14 H 1.48494 * 109.47249 * 91.24974 * 13 11 9 15 15 H 1.48495 * 109.47202 * 211.25297 * 13 11 9 16 16 H 1.48499 * 109.47111 * 331.25038 * 13 11 9 17 17 C 1.53000 * 117.50241 * 273.48079 * 8 7 6 18 18 C 1.52997 * 117.50207 * 204.82035 * 8 7 6 19 19 N 1.46901 * 109.47140 * 240.00489 * 2 1 3 20 20 C 1.48006 * 110.99969 * 189.05706 * 19 2 1 21 21 C 1.50441 * 112.82769 * 191.34677 * 20 19 2 22 22 C 1.54311 * 108.50374 * 93.72845 * 21 20 19 23 23 C 1.45873 * 112.18207 * 281.46593 * 22 21 20 24 24 C 1.54308 * 112.19060 * 61.12048 * 23 22 21 25 25 C 1.47997 * 111.00421 * 60.34077 * 19 2 1 26 26 H 1.08995 * 109.47169 * 172.09721 * 1 2 3 27 27 H 1.08991 * 109.47436 * 292.10121 * 1 2 3 28 28 H 1.09004 * 109.47047 * 52.10367 * 1 2 3 29 29 H 1.09000 * 109.46955 * 304.65255 * 7 6 4 30 30 H 1.09000 * 109.46913 * 64.65062 * 7 6 4 31 31 H 0.96995 * 120.00314 * 179.97438 * 12 11 9 32 32 H 1.09002 * 117.49416 * 0.02562 * 17 8 7 33 33 H 1.08997 * 117.49856 * 145.01402 * 17 8 7 34 34 H 1.08997 * 117.50209 * 214.98619 * 18 8 7 35 35 H 1.09005 * 117.49837 * 359.97438 * 18 8 7 36 36 H 1.08999 * 108.81423 * 312.21227 * 20 19 2 37 37 H 1.08999 * 108.80930 * 70.47897 * 20 19 2 38 38 H 1.09000 * 109.63161 * 334.02440 * 21 20 19 39 39 H 1.09009 * 109.63268 * 213.43584 * 21 20 19 40 40 H 1.08997 * 108.93927 * 160.76679 * 22 21 20 41 41 H 1.09001 * 108.93453 * 42.15854 * 22 21 20 42 42 H 1.08999 * 108.93873 * 300.41770 * 23 22 21 43 43 H 1.09003 * 108.93745 * 181.81446 * 23 22 21 44 44 H 1.08997 * 109.63563 * 161.76082 * 24 23 22 45 45 H 1.08997 * 109.63468 * 41.15837 * 24 23 22 46 46 H 1.08996 * 108.81344 * 205.70183 * 25 19 2 47 47 H 1.09007 * 108.80966 * 323.97650 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.2462 -1.8991 1.1966 6 8 2.2475 -0.0218 2.3623 7 6 2.6353 -0.7853 3.5349 8 6 2.7218 0.1471 4.7448 9 6 1.4508 0.8772 5.0949 10 1 1.2686 1.8649 4.6979 11 6 0.5206 0.2843 5.9221 12 7 -0.5795 0.9293 6.2435 13 14 0.8230 -1.4352 6.5864 14 1 1.5219 -1.3451 7.8935 15 1 -0.4760 -2.1318 6.7665 16 1 1.6635 -2.1957 5.6271 17 6 4.0447 0.8792 4.9795 18 6 3.6347 -0.2747 5.8979 19 7 2.0196 -0.6924 -1.1995 20 6 3.4829 -0.9034 -1.1299 21 6 4.0699 -1.3581 -2.4383 22 6 4.5664 -0.1173 -3.2099 23 6 3.4749 0.6016 -3.8576 24 6 2.4390 1.1268 -2.8416 25 6 1.5519 -0.0165 -2.4302 26 1 -0.3633 -1.0179 -0.1413 27 1 -0.3634 0.3866 0.9520 28 1 -0.3633 0.6313 -0.8110 29 1 1.8929 -1.5602 3.7257 30 1 3.6071 -1.2477 3.3622 31 1 -1.2341 0.5120 6.8251 32 1 4.8532 0.6969 4.2715 33 1 3.9956 1.8888 5.3873 34 1 3.3162 -0.0238 6.9097 35 1 4.1734 -1.2167 5.7947 36 1 3.9595 0.0322 -0.8371 37 1 3.6938 -1.6555 -0.3697 38 1 3.3070 -1.8719 -3.0231 39 1 4.9064 -2.0313 -2.2502 40 1 5.2805 -0.4354 -3.9694 41 1 5.0686 0.5545 -2.5137 42 1 2.9757 -0.0688 -4.5573 43 1 3.8865 1.4455 -4.4113 44 1 1.8372 1.9095 -3.3034 45 1 2.9532 1.5244 -1.9666 46 1 1.5190 -0.7449 -3.2404 47 1 0.5444 0.3637 -2.2612 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125036732.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:32 Heat of formation + Delta-G solvation = -56.419008 kcal Electronic energy + Delta-G solvation = -25221.461910 eV Core-core repulsion = 21791.236481 eV Total energy + Delta-G solvation = -3430.225429 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.42539 -39.05284 -37.13560 -35.54634 -34.96179 -32.30524 -32.11011 -30.86364 -27.42727 -26.54067 -25.51565 -25.02585 -23.35950 -21.73073 -20.92269 -20.40776 -19.28631 -19.04719 -17.43089 -16.80678 -16.51083 -15.91166 -15.72085 -15.28040 -14.69844 -14.61044 -14.21826 -13.83629 -13.64734 -13.43734 -13.23953 -12.86133 -12.65169 -12.45614 -12.37610 -12.22898 -12.09683 -11.87037 -11.40739 -11.19635 -11.16111 -11.02325 -10.88773 -10.79695 -10.69290 -10.56297 -10.33947 -10.27083 -9.93571 -9.83543 -9.57612 -9.05052 -8.59959 -8.58110 -8.22580 -6.12713 -4.15343 2.65167 3.02356 3.26524 3.36857 3.39737 3.82045 4.39261 4.45409 4.56127 4.71012 4.82868 4.93998 5.03510 5.13205 5.14769 5.19179 5.22316 5.24255 5.35099 5.48024 5.51944 5.61825 5.66847 5.76067 5.80116 5.85066 5.88244 5.93372 5.93570 5.98486 5.99850 6.09062 6.11171 6.14724 6.18041 6.28053 6.31733 6.39868 6.64621 6.88226 6.93351 7.05012 7.06799 7.18994 7.68223 8.35047 8.49838 8.91962 9.49602 10.99139 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.023542 B = 0.003982 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.053504 B = 7030.593451 C = 7410.028343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.097 3.903 3 H 0.071 0.929 4 C 0.458 3.542 5 O -0.506 6.506 6 O -0.331 6.331 7 C 0.109 3.891 8 C -0.005 4.005 9 C -0.479 4.479 10 H 0.081 0.919 11 C 0.077 3.923 12 N -0.896 5.896 13 Si 0.875 3.125 14 H -0.276 1.276 15 H -0.291 1.291 16 H -0.261 1.261 17 C -0.174 4.174 18 C -0.191 4.191 19 N -0.530 5.530 20 C 0.051 3.949 21 C -0.116 4.116 22 C -0.123 4.123 23 C -0.115 4.115 24 C -0.152 4.152 25 C 0.056 3.944 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.265 0.735 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.032 0.968 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.055 -1.319 -18.149 19.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.012 4.012 3 H 0.089 0.911 4 C 0.299 3.701 5 O -0.394 6.394 6 O -0.245 6.245 7 C 0.035 3.965 8 C -0.006 4.006 9 C -0.517 4.517 10 H 0.099 0.901 11 C -0.125 4.125 12 N -0.533 5.533 13 Si 0.703 3.297 14 H -0.202 1.202 15 H -0.218 1.218 16 H -0.185 1.185 17 C -0.212 4.212 18 C -0.228 4.228 19 N -0.257 5.257 20 C -0.076 4.076 21 C -0.154 4.154 22 C -0.160 4.160 23 C -0.153 4.153 24 C -0.191 4.191 25 C -0.071 4.071 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.774 -2.120 -17.999 19.348 hybrid contribution 0.518 -0.273 0.577 0.822 sum 7.292 -2.393 -17.422 19.038 Atomic orbital electron populations 1.21853 0.91036 1.03629 1.03535 1.21116 0.97562 0.96102 0.86412 0.91128 1.23377 0.74723 0.86589 0.85366 1.90588 1.47463 1.16506 1.84863 1.86549 1.77869 1.41675 1.18429 1.22981 0.97894 0.93596 0.82009 1.19332 0.92540 0.97694 0.91047 1.20196 0.99178 1.03345 1.28932 0.90088 1.24974 0.94701 0.97315 0.95520 1.69877 1.09495 1.37825 1.36111 0.86935 0.77458 0.85338 0.80012 1.20207 1.21811 1.18543 1.22843 0.98923 0.96806 1.02584 1.22994 1.05044 0.98039 0.96732 1.61711 1.13194 1.50480 1.00354 1.21976 0.86023 1.00535 0.99018 1.21387 1.00599 0.97366 0.96036 1.20633 0.98220 0.97309 0.99886 1.20534 0.96875 0.99784 0.98098 1.21961 0.98496 0.98983 0.99706 1.22013 0.98575 0.94787 0.91699 0.90898 0.90263 0.91084 0.91527 0.93683 0.92509 0.90880 0.89140 0.88762 0.90748 0.95019 0.89642 0.90600 0.91145 0.92206 0.92285 0.91995 0.92439 0.91153 0.91626 0.90451 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.83 37.16 0.33 -1.60 16 2 C 0.10 1.45 2.52 -68.87 -0.17 1.28 16 3 H 0.07 1.00 7.73 -51.92 -0.40 0.60 16 4 C 0.46 8.74 6.16 36.01 0.22 8.96 16 5 O -0.51 -10.59 14.66 -18.75 -0.27 -10.87 16 6 O -0.33 -7.11 10.05 -39.24 -0.39 -7.51 16 7 C 0.11 2.43 5.04 37.16 0.19 2.62 16 8 C -0.01 -0.12 1.09 -155.66 -0.17 -0.29 16 9 C -0.48 -13.26 9.26 -34.44 -0.32 -13.58 16 10 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 11 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 12 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 13 Si 0.87 21.57 24.90 -169.99 -4.23 17.33 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.26 -6.17 5.64 56.52 0.32 -5.85 16 17 C -0.17 -3.53 9.94 -26.70 -0.27 -3.80 16 18 C -0.19 -4.00 7.60 -26.70 -0.20 -4.21 16 19 N -0.53 -7.01 4.36 -229.30 -1.00 -8.01 16 20 C 0.05 0.67 4.23 -4.49 -0.02 0.65 16 21 C -0.12 -1.19 5.63 -27.32 -0.15 -1.34 16 22 C -0.12 -1.07 5.30 -29.42 -0.16 -1.22 16 23 C -0.12 -0.93 5.30 -29.42 -0.16 -1.08 16 24 C -0.15 -1.36 5.59 -27.32 -0.15 -1.51 16 25 C 0.06 0.56 5.00 -4.49 -0.02 0.54 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.08 1.19 8.13 -51.93 -0.42 0.76 16 28 H 0.07 0.75 6.38 -51.93 -0.33 0.42 16 29 H 0.07 1.58 6.47 -51.93 -0.34 1.25 16 30 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 31 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 34 H 0.09 2.04 7.24 -51.93 -0.38 1.67 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.03 0.42 6.49 -51.93 -0.34 0.08 16 37 H 0.09 1.34 6.13 -51.93 -0.32 1.02 16 38 H 0.08 0.78 7.08 -51.93 -0.37 0.41 16 39 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.55 7.52 -51.93 -0.39 0.16 16 42 H 0.06 0.47 7.52 -51.93 -0.39 0.08 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.68 6.62 -51.93 -0.34 0.34 16 46 H 0.08 0.73 6.59 -51.93 -0.34 0.39 16 47 H 0.08 0.72 5.60 -51.93 -0.29 0.43 16 LS Contribution 353.83 15.07 5.33 5.33 Total: -1.00 -30.65 353.83 -9.04 -39.69 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -8.09 Total: 2.65 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -1.15 Total: -12.50 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: -0.23 Total: -34.13 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.67 Total: -18.38 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.23 Total: 17.33 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.65 -9.04 -39.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125036732.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.730 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds