Wall clock time and date at job start Tue Mar 31 2020 07:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47265 * 2 1 4 4 C 1.50700 * 109.47251 * 120.00272 * 2 1 3 5 5 O 1.20823 * 119.99829 * 90.72409 * 4 2 1 6 6 O 1.34224 * 120.00198 * 270.44983 * 4 2 1 7 7 C 1.45201 * 117.00222 * 175.53474 * 6 4 2 8 8 C 1.52997 * 109.47275 * 184.65222 * 7 6 4 9 9 C 1.50703 * 115.54610 * 59.15027 * 8 7 6 10 10 H 1.07996 * 120.00125 * 266.95854 * 9 8 7 11 11 C 1.37883 * 119.99794 * 86.96388 * 9 8 7 12 12 N 1.31515 * 120.00065 * 178.99901 * 11 9 8 13 13 Si 1.86796 * 120.00054 * 359.00100 * 11 9 8 14 14 H 1.48494 * 109.47249 * 91.24974 * 13 11 9 15 15 H 1.48495 * 109.47202 * 211.25297 * 13 11 9 16 16 H 1.48499 * 109.47111 * 331.25038 * 13 11 9 17 17 C 1.53000 * 117.50241 * 273.48079 * 8 7 6 18 18 C 1.52997 * 117.50207 * 204.82035 * 8 7 6 19 19 N 1.46901 * 109.47140 * 240.00489 * 2 1 3 20 20 C 1.48006 * 110.99969 * 189.05706 * 19 2 1 21 21 C 1.50441 * 112.82769 * 191.34677 * 20 19 2 22 22 C 1.54311 * 108.50374 * 93.72845 * 21 20 19 23 23 C 1.45873 * 112.18207 * 281.46593 * 22 21 20 24 24 C 1.54308 * 112.19060 * 61.12048 * 23 22 21 25 25 C 1.47997 * 111.00421 * 60.34077 * 19 2 1 26 26 H 1.08995 * 109.47169 * 172.09721 * 1 2 3 27 27 H 1.08991 * 109.47436 * 292.10121 * 1 2 3 28 28 H 1.09004 * 109.47047 * 52.10367 * 1 2 3 29 29 H 1.09000 * 109.46955 * 304.65255 * 7 6 4 30 30 H 1.09000 * 109.46913 * 64.65062 * 7 6 4 31 31 H 0.96995 * 120.00314 * 179.97438 * 12 11 9 32 32 H 1.09002 * 117.49416 * 0.02562 * 17 8 7 33 33 H 1.08997 * 117.49856 * 145.01402 * 17 8 7 34 34 H 1.08997 * 117.50209 * 214.98619 * 18 8 7 35 35 H 1.09005 * 117.49837 * 359.97438 * 18 8 7 36 36 H 1.08999 * 108.81423 * 312.21227 * 20 19 2 37 37 H 1.08999 * 108.80930 * 70.47897 * 20 19 2 38 38 H 1.09000 * 109.63161 * 334.02440 * 21 20 19 39 39 H 1.09009 * 109.63268 * 213.43584 * 21 20 19 40 40 H 1.08997 * 108.93927 * 160.76679 * 22 21 20 41 41 H 1.09001 * 108.93453 * 42.15854 * 22 21 20 42 42 H 1.08999 * 108.93873 * 300.41770 * 23 22 21 43 43 H 1.09003 * 108.93745 * 181.81446 * 23 22 21 44 44 H 1.08997 * 109.63563 * 161.76082 * 24 23 22 45 45 H 1.08997 * 109.63468 * 41.15837 * 24 23 22 46 46 H 1.08996 * 108.81344 * 205.70183 * 25 19 2 47 47 H 1.09007 * 108.80966 * 323.97650 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.2462 -1.8991 1.1966 6 8 2.2475 -0.0218 2.3623 7 6 2.6353 -0.7853 3.5349 8 6 2.7218 0.1471 4.7448 9 6 1.4508 0.8772 5.0949 10 1 1.2686 1.8649 4.6979 11 6 0.5206 0.2843 5.9221 12 7 -0.5795 0.9293 6.2435 13 14 0.8230 -1.4352 6.5864 14 1 1.5219 -1.3451 7.8935 15 1 -0.4760 -2.1318 6.7665 16 1 1.6635 -2.1957 5.6271 17 6 4.0447 0.8792 4.9795 18 6 3.6347 -0.2747 5.8979 19 7 2.0196 -0.6924 -1.1995 20 6 3.4829 -0.9034 -1.1299 21 6 4.0699 -1.3581 -2.4383 22 6 4.5664 -0.1173 -3.2099 23 6 3.4749 0.6016 -3.8576 24 6 2.4390 1.1268 -2.8416 25 6 1.5519 -0.0165 -2.4302 26 1 -0.3633 -1.0179 -0.1413 27 1 -0.3634 0.3866 0.9520 28 1 -0.3633 0.6313 -0.8110 29 1 1.8929 -1.5602 3.7257 30 1 3.6071 -1.2477 3.3622 31 1 -1.2341 0.5120 6.8251 32 1 4.8532 0.6969 4.2715 33 1 3.9956 1.8888 5.3873 34 1 3.3162 -0.0238 6.9097 35 1 4.1734 -1.2167 5.7947 36 1 3.9595 0.0322 -0.8371 37 1 3.6938 -1.6555 -0.3697 38 1 3.3070 -1.8719 -3.0231 39 1 4.9064 -2.0313 -2.2502 40 1 5.2805 -0.4354 -3.9694 41 1 5.0686 0.5545 -2.5137 42 1 2.9757 -0.0688 -4.5573 43 1 3.8865 1.4455 -4.4113 44 1 1.8372 1.9095 -3.3034 45 1 2.9532 1.5244 -1.9666 46 1 1.5190 -0.7449 -3.2404 47 1 0.5444 0.3637 -2.2612 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125036732.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:32 Heat of formation + Delta-G solvation = -74.661622 kcal Electronic energy + Delta-G solvation = -25222.252969 eV Core-core repulsion = 21791.236481 eV Total energy + Delta-G solvation = -3431.016489 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.80663 -40.17183 -38.80035 -37.09088 -36.06923 -34.26668 -33.13270 -31.88696 -29.11491 -27.62018 -27.31092 -26.06969 -24.55177 -23.38113 -21.98816 -21.29505 -21.07406 -20.25511 -18.94203 -18.49138 -17.81000 -17.43994 -17.03642 -16.76161 -16.16802 -15.67072 -15.56959 -15.08343 -14.78985 -14.64686 -14.55431 -14.25331 -14.16956 -13.83446 -13.64843 -13.32754 -13.19030 -13.09515 -13.03092 -12.75430 -12.48042 -12.29765 -12.11339 -12.07389 -11.87144 -11.73690 -11.63683 -11.51769 -11.42055 -11.29037 -11.00820 -10.94087 -10.66823 -10.39375 -9.24182 -8.31533 -6.38150 1.14156 1.30770 1.35272 1.44437 1.61124 2.32835 2.73298 3.01448 3.11999 3.63785 3.75068 3.81975 3.92428 3.98347 4.01129 4.08915 4.17912 4.18802 4.27890 4.31883 4.35094 4.39332 4.48276 4.57188 4.62284 4.70084 4.74518 4.78782 4.81776 4.94964 4.97489 5.01396 5.08694 5.12524 5.16363 5.23269 5.27505 5.34951 5.37893 5.41681 5.47974 5.57505 5.64375 5.89183 6.14762 6.28974 6.68503 6.81583 7.30258 8.84106 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.023542 B = 0.003982 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.053504 B = 7030.593451 C = 7410.028343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.103 3.897 3 H 0.078 0.922 4 C 0.453 3.547 5 O -0.527 6.527 6 O -0.348 6.348 7 C 0.114 3.886 8 C -0.039 4.039 9 C -0.478 4.478 10 H 0.035 0.965 11 C 0.024 3.976 12 N -0.944 5.944 13 Si 0.930 3.070 14 H -0.259 1.259 15 H -0.296 1.296 16 H -0.244 1.244 17 C -0.155 4.155 18 C -0.179 4.179 19 N -0.540 5.540 20 C 0.055 3.945 21 C -0.111 4.111 22 C -0.119 4.119 23 C -0.115 4.115 24 C -0.150 4.150 25 C 0.055 3.945 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.106 0.894 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.266 0.734 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.026 0.974 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.048 0.952 46 H 0.089 0.911 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.616 -2.157 -19.939 21.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.007 4.007 3 H 0.096 0.904 4 C 0.297 3.703 5 O -0.416 6.416 6 O -0.264 6.264 7 C 0.040 3.960 8 C -0.040 4.040 9 C -0.516 4.516 10 H 0.054 0.946 11 C -0.173 4.173 12 N -0.584 5.584 13 Si 0.755 3.245 14 H -0.184 1.184 15 H -0.223 1.223 16 H -0.168 1.168 17 C -0.192 4.192 18 C -0.216 4.216 19 N -0.267 5.267 20 C -0.072 4.072 21 C -0.149 4.149 22 C -0.156 4.156 23 C -0.152 4.152 24 C -0.189 4.189 25 C -0.071 4.071 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.125 0.875 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.359 -2.950 -19.809 21.702 hybrid contribution 0.028 0.070 1.060 1.063 sum 8.387 -2.879 -18.749 20.740 Atomic orbital electron populations 1.21847 0.89964 1.03967 1.03762 1.21185 0.98207 0.95954 0.85320 0.90439 1.24255 0.73823 0.86637 0.85604 1.90566 1.48384 1.17514 1.85114 1.86565 1.78338 1.42375 1.19078 1.22777 0.98304 0.92804 0.82089 1.19241 0.91949 0.99787 0.93041 1.20298 1.01310 1.01881 1.28072 0.94640 1.25756 0.94331 1.01236 0.96012 1.70017 1.10842 1.39876 1.37655 0.86027 0.77533 0.80636 0.80323 1.18359 1.22325 1.16764 1.22896 0.97463 0.96520 1.02344 1.23063 1.03509 0.99624 0.95432 1.61716 1.13278 1.51074 1.00653 1.21916 0.86189 0.99291 0.99761 1.21363 1.00606 0.98240 0.94687 1.20599 0.98757 0.96364 0.99876 1.20538 0.96448 1.00300 0.97919 1.21940 0.98638 0.98857 0.99446 1.22148 0.99150 0.95418 0.90349 0.91403 0.92405 0.87547 0.93577 0.91482 0.92468 0.87873 0.89605 0.89575 0.87704 0.95544 0.92842 0.90385 0.90753 0.90669 0.93142 0.90983 0.91308 0.89503 0.93287 0.89319 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 8.83 71.98 0.64 -3.01 16 2 C 0.10 3.03 2.52 44.17 0.11 3.14 16 3 H 0.08 2.16 7.73 -2.38 -0.02 2.15 16 4 C 0.45 17.50 6.16 71.24 0.44 17.94 16 5 O -0.53 -22.26 14.66 21.97 0.32 -21.94 16 6 O -0.35 -15.19 10.05 -51.36 -0.52 -15.71 16 7 C 0.11 5.03 5.04 71.98 0.36 5.39 16 8 C -0.04 -1.81 1.09 -52.93 -0.06 -1.87 16 9 C -0.48 -27.23 9.26 25.60 0.24 -26.99 16 10 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 11 C 0.02 1.42 5.47 84.66 0.46 1.88 16 12 N -0.94 -58.71 13.96 21.45 0.30 -58.42 16 13 Si 0.93 44.44 24.90 68.60 1.71 46.15 16 14 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 15 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 16 H -0.24 -10.92 5.64 99.48 0.56 -10.36 16 17 C -0.16 -5.98 9.94 30.62 0.30 -5.68 16 18 C -0.18 -7.06 7.60 30.62 0.23 -6.83 16 19 N -0.54 -13.71 4.36 -879.37 -3.84 -17.55 16 20 C 0.06 1.41 4.23 85.26 0.36 1.77 16 21 C -0.11 -2.10 5.63 30.21 0.17 -1.93 16 22 C -0.12 -1.79 5.30 28.85 0.15 -1.63 16 23 C -0.11 -1.51 5.30 28.85 0.15 -1.36 16 24 C -0.15 -2.31 5.59 30.21 0.17 -2.14 16 25 C 0.06 0.98 5.00 85.27 0.43 1.41 16 26 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.06 1.77 8.13 -2.39 -0.02 1.75 16 28 H 0.11 2.02 6.38 -2.38 -0.02 2.01 16 29 H 0.05 2.18 6.47 -2.39 -0.02 2.17 16 30 H 0.07 2.63 8.11 -2.39 -0.02 2.61 16 31 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 32 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 33 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 34 H 0.09 3.54 7.24 -2.39 -0.02 3.53 16 35 H 0.10 3.51 8.14 -2.38 -0.02 3.50 16 36 H 0.03 0.69 6.49 -2.39 -0.02 0.67 16 37 H 0.05 1.70 6.13 -2.39 -0.01 1.68 16 38 H 0.08 1.44 7.08 -2.39 -0.02 1.43 16 39 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.05 0.85 7.52 -2.39 -0.02 0.84 16 42 H 0.07 0.83 7.52 -2.39 -0.02 0.82 16 43 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.05 0.94 6.62 -2.39 -0.02 0.92 16 46 H 0.09 1.42 6.59 -2.39 -0.02 1.40 16 47 H 0.09 1.37 5.60 -2.38 -0.01 1.36 16 Total: -1.00 -68.71 353.83 2.93 -65.79 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.79 Total: 21.59 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 4.16 Total: -19.91 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -3.54 Total: -75.97 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -0.19 Total: -37.65 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.71 Total: 46.15 kcal Total: -68.71 2.93 -65.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125036732.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.876 kcal (2) G-P(sol) polarization free energy of solvation -68.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds