Wall clock time and date at job start Tue Mar 31 2020 07:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47532 * 2 1 4 4 C 1.50700 * 109.47343 * 239.99453 * 2 1 3 5 5 O 1.20826 * 120.00266 * 266.80196 * 4 2 1 6 6 O 1.34234 * 120.00037 * 86.79861 * 4 2 1 7 7 C 1.45197 * 116.99697 * 185.03317 * 6 4 2 8 8 C 1.53003 * 109.46582 * 184.15411 * 7 6 4 9 9 C 1.50703 * 115.55280 * 295.56259 * 8 7 6 10 10 H 1.08001 * 119.99560 * 94.16302 * 9 8 7 11 11 C 1.37875 * 120.00226 * 273.89634 * 9 8 7 12 12 N 1.31513 * 119.99735 * 355.76524 * 11 9 8 13 13 Si 1.86798 * 120.00031 * 175.76122 * 11 9 8 14 14 H 1.48495 * 109.47135 * 90.00127 * 13 11 9 15 15 H 1.48502 * 109.47168 * 210.00087 * 13 11 9 16 16 H 1.48501 * 109.47459 * 329.99972 * 13 11 9 17 17 C 1.53001 * 117.52237 * 81.26691 * 8 7 6 18 18 C 1.53003 * 60.00170 * 107.47982 * 17 8 7 19 19 N 1.46907 * 109.47020 * 119.99701 * 2 1 3 20 20 C 1.48007 * 110.99773 * 315.30790 * 19 2 1 21 21 C 1.50443 * 112.82633 * 191.34781 * 20 19 2 22 22 C 1.54304 * 108.50209 * 93.72647 * 21 20 19 23 23 C 1.45882 * 112.18570 * 281.46462 * 22 21 20 24 24 C 1.54306 * 112.18383 * 61.11988 * 23 22 21 25 25 C 1.47999 * 111.00030 * 186.58895 * 19 2 1 26 26 H 1.09007 * 109.47175 * 65.19044 * 1 2 3 27 27 H 1.08999 * 109.47452 * 185.18722 * 1 2 3 28 28 H 1.09002 * 109.47065 * 305.19309 * 1 2 3 29 29 H 1.08999 * 109.47104 * 64.16080 * 7 6 4 30 30 H 1.08999 * 109.47567 * 304.15070 * 7 6 4 31 31 H 0.97002 * 119.99973 * 185.00912 * 12 11 9 32 32 H 1.08991 * 117.50200 * 214.97015 * 17 8 7 33 33 H 1.09007 * 117.49001 * 359.97438 * 17 8 7 34 34 H 1.08997 * 117.49774 * 252.51728 * 18 17 8 35 35 H 1.08997 * 117.51703 * 107.48185 * 18 17 8 36 36 H 1.08994 * 108.80894 * 312.21176 * 20 19 2 37 37 H 1.08997 * 108.80612 * 70.48064 * 20 19 2 38 38 H 1.09003 * 109.62707 * 334.02407 * 21 20 19 39 39 H 1.08997 * 109.62969 * 213.43872 * 21 20 19 40 40 H 1.09001 * 108.93712 * 160.76606 * 22 21 20 41 41 H 1.08998 * 108.93775 * 42.16340 * 22 21 20 42 42 H 1.09008 * 108.93593 * 300.42260 * 23 22 21 43 43 H 1.09000 * 108.93817 * 181.81768 * 23 22 21 44 44 H 1.09006 * 109.63175 * 161.75917 * 24 23 22 45 45 H 1.08997 * 109.63242 * 41.16852 * 24 23 22 46 46 H 1.09004 * 108.81234 * 205.69955 * 25 19 2 47 47 H 1.08994 * 108.81201 * 323.97415 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.2888 -1.8904 -1.1843 6 8 2.1949 -0.0327 -2.3775 7 6 2.5738 -0.8016 -3.5494 8 6 2.8120 0.1467 -4.7263 9 6 1.6024 0.9099 -5.2013 10 1 1.4076 1.9026 -4.8232 11 6 0.7475 0.3430 -6.1225 12 7 1.0313 -0.8281 -6.6493 13 14 -0.8139 1.2383 -6.6224 14 1 -0.5320 2.1102 -7.7909 15 1 -1.8584 0.2470 -6.9849 16 1 -1.2925 2.0695 -5.4887 17 6 4.1673 0.8526 -4.8024 18 6 3.8377 -0.2779 -5.7794 19 7 2.0196 -0.6925 1.1995 20 6 1.2703 -0.2645 2.4020 21 6 1.9052 -0.7331 3.6828 22 6 2.8337 0.3829 4.2060 23 6 4.1066 0.4191 3.4944 24 6 3.9242 0.6978 1.9877 25 6 3.4905 -0.5764 1.3157 26 1 -0.3634 0.4312 -0.9329 27 1 -0.3634 -1.0234 0.0929 28 1 -0.3633 0.5923 0.8398 29 1 1.7745 -1.4987 -3.8007 30 1 3.4880 -1.3570 -3.3397 31 1 0.4690 -1.1939 -7.3500 32 1 4.1841 1.8689 -5.1959 33 1 4.8895 0.6417 -4.0136 34 1 4.3430 -1.2325 -5.6334 35 1 3.6373 -0.0056 -6.8156 36 1 1.2169 0.8240 2.4139 37 1 0.2575 -0.6633 2.3453 38 1 2.4872 -1.6353 3.4943 39 1 1.1306 -0.9411 4.4209 40 1 3.0254 0.2156 5.2659 41 1 2.3339 1.3440 4.0860 42 1 4.6087 -0.5406 3.6185 43 1 4.7310 1.2014 3.9259 44 1 4.8690 1.0340 1.5604 45 1 3.1620 1.4641 1.8467 46 1 3.8655 -1.4227 1.8914 47 1 3.9258 -0.6129 0.3171 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125036920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:35 Heat of formation + Delta-G solvation = -63.645963 kcal Electronic energy + Delta-G solvation = -25052.211123 eV Core-core repulsion = 21621.672310 eV Total energy + Delta-G solvation = -3430.538814 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.29200 -39.00840 -36.78495 -35.36989 -34.88564 -32.36879 -31.93820 -30.85991 -27.11843 -26.44137 -25.44667 -24.96562 -23.42707 -21.18335 -20.92905 -20.31989 -19.27502 -19.04077 -17.21899 -16.57116 -16.36450 -16.03739 -15.59222 -15.06573 -14.60901 -14.54145 -14.27170 -13.85185 -13.71960 -13.30776 -13.23808 -12.70194 -12.52617 -12.40720 -12.04310 -11.98579 -11.82494 -11.64111 -11.51369 -11.29230 -10.98297 -10.95656 -10.86989 -10.78132 -10.75597 -10.52633 -10.36485 -10.24625 -9.84692 -9.81682 -9.42232 -8.90112 -8.44290 -8.22457 -8.16046 -6.04188 -4.11530 2.80122 3.11957 3.28485 3.35843 3.39395 3.91812 4.39188 4.45538 4.53170 4.74228 4.93713 4.98781 5.06380 5.16775 5.19247 5.23154 5.24425 5.29515 5.43594 5.48599 5.56143 5.64786 5.70845 5.77393 5.79541 5.89458 5.89860 5.94579 6.00022 6.03050 6.13210 6.17061 6.23591 6.25584 6.33572 6.53736 6.66786 6.75188 6.96078 7.06866 7.07425 7.26686 7.38608 7.54596 7.87288 8.38470 8.54279 8.90045 9.54099 11.03486 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022292 B = 0.003800 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.738427 B = 7367.590802 C = 7978.726259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.097 3.903 3 H 0.071 0.929 4 C 0.455 3.545 5 O -0.503 6.503 6 O -0.340 6.340 7 C 0.117 3.883 8 C 0.034 3.966 9 C -0.487 4.487 10 H 0.062 0.938 11 C 0.068 3.932 12 N -0.882 5.882 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.272 1.272 17 C -0.207 4.207 18 C -0.138 4.138 19 N -0.532 5.532 20 C 0.066 3.934 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.151 4.151 25 C 0.060 3.940 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.261 0.739 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.036 0.964 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.494 2.602 19.072 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.012 4.012 3 H 0.088 0.912 4 C 0.296 3.704 5 O -0.390 6.390 6 O -0.255 6.255 7 C 0.044 3.956 8 C 0.034 3.966 9 C -0.525 4.525 10 H 0.080 0.920 11 C -0.135 4.135 12 N -0.519 5.519 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.197 1.197 17 C -0.244 4.244 18 C -0.176 4.176 19 N -0.259 5.259 20 C -0.060 4.060 21 C -0.159 4.159 22 C -0.158 4.158 23 C -0.154 4.154 24 C -0.190 4.190 25 C -0.067 4.067 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.389 1.603 18.896 19.114 hybrid contribution -0.566 1.063 -0.405 1.271 sum 1.823 2.666 18.490 18.770 Atomic orbital electron populations 1.21886 0.91450 1.03585 1.03484 1.21072 0.97107 0.95991 0.87068 0.91150 1.23317 0.75188 0.86487 0.85386 1.90603 1.46150 1.16876 1.85410 1.86534 1.78593 1.42597 1.17805 1.22869 0.98270 0.93472 0.80971 1.18789 0.89242 0.96616 0.91998 1.20383 1.06157 1.01242 1.24713 0.91959 1.25016 0.97749 0.94681 0.96042 1.69990 1.38931 1.17108 1.25883 0.86591 0.83209 0.79404 0.78873 1.20653 1.21173 1.19670 1.22996 1.01356 0.97362 1.02692 1.22497 1.02707 0.95785 0.96591 1.61544 1.04132 1.58762 1.01414 1.21800 0.97697 0.98038 0.88502 1.21446 0.99304 0.99176 0.96015 1.20612 0.96520 0.99011 0.99672 1.20546 0.97741 1.01906 0.95244 1.21956 1.02058 0.99077 0.95890 1.21892 0.86710 0.96904 1.01226 0.90440 0.90962 0.91209 0.91170 0.94204 0.92918 0.90140 0.91745 0.91819 0.89093 0.94619 0.90552 0.90472 0.91007 0.92199 0.92289 0.91936 0.92382 0.91124 0.91661 0.90415 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.22 37.16 0.31 -1.62 16 2 C 0.10 1.46 2.55 -68.86 -0.18 1.28 16 3 H 0.07 0.99 7.65 -51.93 -0.40 0.60 16 4 C 0.46 8.93 5.88 36.01 0.21 9.15 16 5 O -0.50 -11.07 15.97 -18.75 -0.30 -11.37 16 6 O -0.34 -7.55 10.15 -39.27 -0.40 -7.94 16 7 C 0.12 2.82 5.37 37.16 0.20 3.02 16 8 C 0.03 0.85 1.71 -155.65 -0.27 0.59 16 9 C -0.49 -13.28 8.77 -34.44 -0.30 -13.59 16 10 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 11 C 0.07 1.86 5.43 -17.82 -0.10 1.76 16 12 N -0.88 -24.86 12.60 55.43 0.70 -24.16 16 13 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 C -0.21 -4.57 9.96 -26.73 -0.27 -4.84 16 18 C -0.14 -3.26 9.09 -26.73 -0.24 -3.50 16 19 N -0.53 -7.12 4.24 -229.31 -0.97 -8.09 16 20 C 0.07 0.68 3.78 -4.49 -0.02 0.66 16 21 C -0.12 -1.05 5.63 -27.32 -0.15 -1.20 16 22 C -0.12 -0.94 5.30 -29.42 -0.16 -1.10 16 23 C -0.12 -0.98 5.30 -29.42 -0.16 -1.14 16 24 C -0.15 -1.54 5.55 -27.32 -0.15 -1.69 16 25 C 0.06 0.76 4.85 -4.49 -0.02 0.74 16 26 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 0.71 6.81 -51.93 -0.35 0.36 16 29 H 0.07 1.84 8.14 -51.93 -0.42 1.41 16 30 H 0.04 0.91 7.94 -51.93 -0.41 0.50 16 31 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 32 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.09 2.27 8.13 -51.93 -0.42 1.85 16 36 H 0.04 0.35 6.36 -51.93 -0.33 0.02 16 37 H 0.08 0.75 7.02 -51.93 -0.36 0.39 16 38 H 0.08 0.75 7.08 -51.93 -0.37 0.38 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.46 7.52 -51.93 -0.39 0.07 16 42 H 0.06 0.52 7.52 -51.92 -0.39 0.13 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.69 6.61 -51.93 -0.34 0.35 16 46 H 0.08 0.95 6.59 -51.93 -0.34 0.61 16 47 H 0.07 1.01 6.68 -51.93 -0.35 0.66 16 LS Contribution 364.64 15.07 5.50 5.50 Total: -1.00 -29.83 364.64 -10.02 -39.85 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -8.23 Total: 1.74 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -1.29 Total: -11.48 kcal Atomic # 7 Polarization: -31.98 SS G_CDS: -0.27 Total: -32.25 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.70 Total: -19.31 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.83 -10.02 -39.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125036920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.797 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds