Wall clock time and date at job start Tue Mar 31 2020 07:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47532 * 2 1 4 4 C 1.50700 * 109.47343 * 239.99453 * 2 1 3 5 5 O 1.20826 * 120.00266 * 266.80196 * 4 2 1 6 6 O 1.34234 * 120.00037 * 86.79861 * 4 2 1 7 7 C 1.45197 * 116.99697 * 185.03317 * 6 4 2 8 8 C 1.53003 * 109.46582 * 184.15411 * 7 6 4 9 9 C 1.50703 * 115.55280 * 295.56259 * 8 7 6 10 10 H 1.08001 * 119.99560 * 94.16302 * 9 8 7 11 11 C 1.37875 * 120.00226 * 273.89634 * 9 8 7 12 12 N 1.31513 * 119.99735 * 355.76524 * 11 9 8 13 13 Si 1.86798 * 120.00031 * 175.76122 * 11 9 8 14 14 H 1.48495 * 109.47135 * 90.00127 * 13 11 9 15 15 H 1.48502 * 109.47168 * 210.00087 * 13 11 9 16 16 H 1.48501 * 109.47459 * 329.99972 * 13 11 9 17 17 C 1.53001 * 117.52237 * 81.26691 * 8 7 6 18 18 C 1.53003 * 60.00170 * 107.47982 * 17 8 7 19 19 N 1.46907 * 109.47020 * 119.99701 * 2 1 3 20 20 C 1.48007 * 110.99773 * 315.30790 * 19 2 1 21 21 C 1.50443 * 112.82633 * 191.34781 * 20 19 2 22 22 C 1.54304 * 108.50209 * 93.72647 * 21 20 19 23 23 C 1.45882 * 112.18570 * 281.46462 * 22 21 20 24 24 C 1.54306 * 112.18383 * 61.11988 * 23 22 21 25 25 C 1.47999 * 111.00030 * 186.58895 * 19 2 1 26 26 H 1.09007 * 109.47175 * 65.19044 * 1 2 3 27 27 H 1.08999 * 109.47452 * 185.18722 * 1 2 3 28 28 H 1.09002 * 109.47065 * 305.19309 * 1 2 3 29 29 H 1.08999 * 109.47104 * 64.16080 * 7 6 4 30 30 H 1.08999 * 109.47567 * 304.15070 * 7 6 4 31 31 H 0.97002 * 119.99973 * 185.00912 * 12 11 9 32 32 H 1.08991 * 117.50200 * 214.97015 * 17 8 7 33 33 H 1.09007 * 117.49001 * 359.97438 * 17 8 7 34 34 H 1.08997 * 117.49774 * 252.51728 * 18 17 8 35 35 H 1.08997 * 117.51703 * 107.48185 * 18 17 8 36 36 H 1.08994 * 108.80894 * 312.21176 * 20 19 2 37 37 H 1.08997 * 108.80612 * 70.48064 * 20 19 2 38 38 H 1.09003 * 109.62707 * 334.02407 * 21 20 19 39 39 H 1.08997 * 109.62969 * 213.43872 * 21 20 19 40 40 H 1.09001 * 108.93712 * 160.76606 * 22 21 20 41 41 H 1.08998 * 108.93775 * 42.16340 * 22 21 20 42 42 H 1.09008 * 108.93593 * 300.42260 * 23 22 21 43 43 H 1.09000 * 108.93817 * 181.81768 * 23 22 21 44 44 H 1.09006 * 109.63175 * 161.75917 * 24 23 22 45 45 H 1.08997 * 109.63242 * 41.16852 * 24 23 22 46 46 H 1.09004 * 108.81234 * 205.69955 * 25 19 2 47 47 H 1.08994 * 108.81201 * 323.97415 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.2888 -1.8904 -1.1843 6 8 2.1949 -0.0327 -2.3775 7 6 2.5738 -0.8016 -3.5494 8 6 2.8120 0.1467 -4.7263 9 6 1.6024 0.9099 -5.2013 10 1 1.4076 1.9026 -4.8232 11 6 0.7475 0.3430 -6.1225 12 7 1.0313 -0.8281 -6.6493 13 14 -0.8139 1.2383 -6.6224 14 1 -0.5320 2.1102 -7.7909 15 1 -1.8584 0.2470 -6.9849 16 1 -1.2925 2.0695 -5.4887 17 6 4.1673 0.8526 -4.8024 18 6 3.8377 -0.2779 -5.7794 19 7 2.0196 -0.6925 1.1995 20 6 1.2703 -0.2645 2.4020 21 6 1.9052 -0.7331 3.6828 22 6 2.8337 0.3829 4.2060 23 6 4.1066 0.4191 3.4944 24 6 3.9242 0.6978 1.9877 25 6 3.4905 -0.5764 1.3157 26 1 -0.3634 0.4312 -0.9329 27 1 -0.3634 -1.0234 0.0929 28 1 -0.3633 0.5923 0.8398 29 1 1.7745 -1.4987 -3.8007 30 1 3.4880 -1.3570 -3.3397 31 1 0.4690 -1.1939 -7.3500 32 1 4.1841 1.8689 -5.1959 33 1 4.8895 0.6417 -4.0136 34 1 4.3430 -1.2325 -5.6334 35 1 3.6373 -0.0056 -6.8156 36 1 1.2169 0.8240 2.4139 37 1 0.2575 -0.6633 2.3453 38 1 2.4872 -1.6353 3.4943 39 1 1.1306 -0.9411 4.4209 40 1 3.0254 0.2156 5.2659 41 1 2.3339 1.3440 4.0860 42 1 4.6087 -0.5406 3.6185 43 1 4.7310 1.2014 3.9259 44 1 4.8690 1.0340 1.5604 45 1 3.1620 1.4641 1.8467 46 1 3.8655 -1.4227 1.8914 47 1 3.9258 -0.6129 0.3171 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125036920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:34 Heat of formation + Delta-G solvation = -79.281096 kcal Electronic energy + Delta-G solvation = -25052.889114 eV Core-core repulsion = 21621.672310 eV Total energy + Delta-G solvation = -3431.216804 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.69311 -40.16975 -38.56550 -36.96411 -36.06199 -34.01211 -33.17147 -31.87301 -28.89710 -27.48812 -27.24711 -26.03280 -24.62139 -22.98667 -21.98422 -21.25967 -21.20470 -20.19358 -18.76733 -18.24718 -17.72390 -17.24068 -16.96142 -16.71148 -16.34550 -15.59782 -15.48889 -15.31393 -14.80375 -14.56905 -14.21122 -14.09961 -13.82968 -13.59560 -13.46212 -13.26114 -13.09667 -12.93918 -12.86417 -12.82710 -12.72005 -12.39656 -12.20533 -12.09444 -11.80874 -11.69305 -11.57427 -11.51001 -11.42861 -11.21207 -11.06556 -10.89269 -10.46430 -10.09555 -9.19552 -8.11810 -6.25430 1.23277 1.41491 1.43647 1.53578 1.67069 2.42186 2.79768 3.14857 3.39734 3.68801 3.72380 3.82996 3.95961 4.01563 4.10954 4.11331 4.15126 4.33687 4.35128 4.39534 4.42491 4.50157 4.62747 4.63773 4.69765 4.75328 4.81622 4.82455 4.87338 4.94638 5.00570 5.08203 5.15569 5.17056 5.23344 5.28999 5.31183 5.40286 5.42106 5.49015 5.58117 5.70077 5.75499 5.92676 6.15252 6.35217 6.79679 6.89110 7.43269 8.95477 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022292 B = 0.003800 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.738427 B = 7367.590802 C = 7978.726259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.105 3.895 3 H 0.082 0.918 4 C 0.451 3.549 5 O -0.532 6.532 6 O -0.350 6.350 7 C 0.131 3.869 8 C 0.003 3.997 9 C -0.503 4.503 10 H 0.055 0.945 11 C 0.022 3.978 12 N -0.910 5.910 13 Si 0.953 3.047 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.266 1.266 17 C -0.180 4.180 18 C -0.140 4.140 19 N -0.547 5.547 20 C 0.064 3.936 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.146 4.146 25 C 0.064 3.936 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.037 0.963 30 H 0.045 0.955 31 H 0.261 0.739 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.087 4.094 21.233 21.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.005 4.005 3 H 0.100 0.900 4 C 0.294 3.706 5 O -0.421 6.421 6 O -0.265 6.265 7 C 0.057 3.943 8 C 0.002 3.998 9 C -0.540 4.540 10 H 0.074 0.926 11 C -0.178 4.178 12 N -0.548 5.548 13 Si 0.778 3.222 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.190 1.190 17 C -0.217 4.217 18 C -0.177 4.177 19 N -0.275 5.275 20 C -0.061 4.061 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.151 4.151 24 C -0.185 4.185 25 C -0.064 4.064 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.125 0.875 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.987 3.110 21.078 21.399 hybrid contribution -0.404 0.552 -1.025 1.232 sum 1.583 3.662 20.053 20.446 Atomic orbital electron populations 1.21904 0.89868 1.03751 1.04394 1.21128 0.98089 0.95779 0.85458 0.90005 1.24409 0.73958 0.86493 0.85704 1.90577 1.47450 1.18328 1.85721 1.86542 1.78965 1.42810 1.18199 1.22474 0.97149 0.92867 0.81827 1.18892 0.89956 0.97988 0.92944 1.20619 1.07338 1.01200 1.24860 0.92635 1.25737 1.00487 0.95436 0.96134 1.70099 1.40010 1.18356 1.26343 0.85631 0.79485 0.78342 0.78751 1.19838 1.21128 1.19028 1.22998 0.99570 0.97027 1.02091 1.22410 1.02674 0.97050 0.95594 1.61528 1.04687 1.59265 1.01986 1.21952 0.97622 0.98859 0.87714 1.21452 0.99795 0.98852 0.95574 1.20600 0.95848 0.98814 1.00330 1.20524 0.98503 1.02250 0.93782 1.21899 1.01903 0.97531 0.97127 1.21846 0.86426 0.98411 0.99674 0.91706 0.91710 0.87531 0.94484 0.93703 0.92975 0.89585 0.89469 0.90747 0.90943 0.93408 0.89992 0.91846 0.89161 0.90724 0.91785 0.92104 0.91170 0.91090 0.91659 0.90370 0.94583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.22 71.98 0.59 -2.93 16 2 C 0.11 3.07 2.55 44.17 0.11 3.18 16 3 H 0.08 2.20 7.65 -2.39 -0.02 2.18 16 4 C 0.45 18.02 5.88 71.24 0.42 18.44 16 5 O -0.53 -24.11 15.97 21.96 0.35 -23.76 16 6 O -0.35 -15.80 10.15 -51.46 -0.52 -16.32 16 7 C 0.13 6.45 5.37 71.98 0.39 6.83 16 8 C 0.00 0.13 1.71 -52.92 -0.09 0.04 16 9 C -0.50 -27.70 8.77 25.60 0.22 -27.47 16 10 H 0.06 3.05 7.82 -2.91 -0.02 3.03 16 11 C 0.02 1.22 5.43 84.65 0.46 1.68 16 12 N -0.91 -52.27 12.60 21.45 0.27 -52.00 16 13 Si 0.95 43.25 29.54 68.60 2.03 45.28 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 15 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 16 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 17 C -0.18 -7.79 9.96 30.60 0.30 -7.48 16 18 C -0.14 -6.63 9.09 30.60 0.28 -6.36 16 19 N -0.55 -14.08 4.24 -879.39 -3.73 -17.81 16 20 C 0.06 1.15 3.78 85.26 0.32 1.47 16 21 C -0.12 -1.73 5.63 30.21 0.17 -1.56 16 22 C -0.12 -1.47 5.30 28.85 0.15 -1.32 16 23 C -0.11 -1.63 5.30 28.85 0.15 -1.47 16 24 C -0.15 -2.74 5.55 30.21 0.17 -2.57 16 25 C 0.06 1.58 4.85 85.27 0.41 1.99 16 26 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.11 1.85 6.81 -2.39 -0.02 1.84 16 29 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.04 2.11 7.94 -2.39 -0.02 2.09 16 31 H 0.26 14.32 8.32 -92.71 -0.77 13.55 16 32 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 33 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 34 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 35 H 0.07 3.68 8.13 -2.39 -0.02 3.66 16 36 H 0.05 0.76 6.36 -2.39 -0.02 0.75 16 37 H 0.08 1.39 7.02 -2.39 -0.02 1.37 16 38 H 0.06 1.12 7.08 -2.39 -0.02 1.10 16 39 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 0.76 7.52 -2.39 -0.02 0.75 16 42 H 0.06 0.90 7.52 -2.38 -0.02 0.89 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 45 H 0.06 1.23 6.61 -2.39 -0.02 1.22 16 46 H 0.08 1.89 6.59 -2.39 -0.02 1.88 16 47 H 0.04 1.10 6.68 -2.39 -0.02 1.08 16 Total: -1.00 -65.03 364.64 3.39 -61.65 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.93 Total: 20.50 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 4.06 Total: -17.53 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -3.46 Total: -69.81 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -0.17 Total: -40.08 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -65.03 3.39 -61.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125036920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.635 kcal (2) G-P(sol) polarization free energy of solvation -65.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds