Wall clock time and date at job start Tue Mar 31 2020 07:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.46959 * 2 1 4 4 C 1.50705 * 109.46911 * 239.99894 * 2 1 3 5 5 O 1.21280 * 119.99893 * 271.87644 * 4 2 1 6 6 N 1.34773 * 119.99557 * 91.87468 * 4 2 1 7 7 C 1.46501 * 120.00375 * 5.07507 * 6 4 2 8 8 C 1.50694 * 109.47512 * 270.37564 * 7 6 4 9 9 H 1.08005 * 119.99957 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00298 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99998 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99889 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47323 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47001 * 119.99667 * 12 10 8 15 15 H 1.48504 * 109.47141 * 239.99511 * 12 10 8 16 16 C 1.46506 * 119.99748 * 184.80229 * 6 4 2 17 17 C 1.53001 * 109.46688 * 274.16003 * 16 6 4 18 18 C 1.53005 * 117.49809 * 243.11979 * 17 16 6 19 19 C 1.53005 * 117.49394 * 174.46300 * 17 16 6 20 20 C 1.52998 * 109.47307 * 120.00387 * 2 1 3 21 21 C 1.53182 * 109.54088 * 299.55265 * 20 2 1 22 22 C 1.53095 * 109.16393 * 183.15330 * 21 20 2 23 23 O 1.42909 * 109.41340 * 57.61069 * 22 21 20 24 24 C 1.42903 * 114.09364 * 298.84217 * 23 22 21 25 25 C 1.53091 * 109.41755 * 61.16138 * 24 23 22 26 26 H 1.09003 * 109.47115 * 186.25682 * 1 2 3 27 27 H 1.09000 * 109.46815 * 306.25103 * 1 2 3 28 28 H 1.08995 * 109.47460 * 66.25243 * 1 2 3 29 29 H 1.09002 * 109.46982 * 30.37909 * 7 6 4 30 30 H 1.09002 * 109.46806 * 150.37270 * 7 6 4 31 31 H 0.96999 * 119.99669 * 180.02562 * 11 10 8 32 32 H 1.08998 * 109.47046 * 34.15685 * 16 6 4 33 33 H 1.09000 * 109.47028 * 154.16247 * 16 6 4 34 34 H 1.09001 * 115.55467 * 28.79598 * 17 16 6 35 35 H 1.08992 * 117.49839 * 0.02562 * 18 17 16 36 36 H 1.08996 * 117.49750 * 145.02914 * 18 17 16 37 37 H 1.09009 * 117.49518 * 214.97820 * 19 17 16 38 38 H 1.08999 * 117.50386 * 359.97438 * 19 17 16 39 39 H 1.08998 * 109.54671 * 59.82204 * 20 2 1 40 40 H 1.08999 * 109.52037 * 303.05933 * 21 20 2 41 41 H 1.09002 * 109.52083 * 63.25070 * 21 20 2 42 42 H 1.08997 * 109.47756 * 297.62636 * 22 21 20 43 43 H 1.08995 * 109.47966 * 177.59087 * 22 21 20 44 44 H 1.09004 * 109.48197 * 301.17243 * 24 23 22 45 45 H 1.09005 * 109.47564 * 181.14059 * 24 23 22 46 46 H 1.08999 * 109.52236 * 182.48437 * 25 24 23 47 47 H 1.08999 * 109.52590 * 62.29116 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.2020 -1.9112 -1.2106 6 7 2.2929 -0.0114 -2.3529 7 6 2.1950 1.4503 -2.3450 8 6 0.7912 1.8618 -2.7066 9 1 0.0464 1.1097 -2.9213 10 6 0.4577 3.1983 -2.7644 11 7 1.3648 4.1142 -2.5034 12 14 -1.2823 3.7083 -3.2133 13 1 -2.1053 2.4969 -3.4594 14 1 -1.8726 4.4899 -2.0971 15 1 -1.2522 4.5436 -4.4408 16 6 2.6799 -0.7130 -3.5795 17 6 4.1911 -0.9522 -3.5749 18 6 5.0164 -0.2777 -4.6726 19 6 4.7772 -1.7891 -4.7139 20 6 2.0401 -0.7213 1.2492 21 6 1.5396 0.0059 2.5010 22 6 2.1189 -0.6756 3.7435 23 8 3.5459 -0.6696 3.6668 24 6 4.0726 -1.3756 2.5416 25 6 3.5719 -0.7222 1.2508 26 1 -0.3633 -1.0216 0.1120 27 1 -0.3633 0.6077 0.8288 28 1 -0.3634 0.4138 -0.9406 29 1 2.4390 1.8253 -1.3510 30 1 2.8938 1.8651 -3.0714 31 1 1.1300 5.0545 -2.5437 32 1 2.1607 -1.6701 -3.6299 33 1 2.4105 -0.1074 -4.4448 34 1 4.6485 -1.0515 -2.5905 35 1 4.4829 0.3368 -5.3976 36 1 6.0169 0.0664 -4.4104 37 1 5.6205 -2.4386 -4.4787 38 1 4.0863 -2.1695 -5.4661 39 1 1.6748 -1.7483 1.2519 40 1 1.8635 1.0463 2.4718 41 1 0.4510 -0.0368 2.5363 42 1 1.7618 -1.7042 3.7935 43 1 1.8005 -0.1363 4.6356 44 1 3.7412 -2.4135 2.5759 45 1 5.1618 -1.3406 2.5679 46 1 3.9366 -1.2857 0.3920 47 1 3.9368 0.3034 1.1964 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130617858.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:00 Heat of formation + Delta-G solvation = -78.949871 kcal Electronic energy + Delta-G solvation = -25557.886792 eV Core-core repulsion = 22126.684351 eV Total energy + Delta-G solvation = -3431.202441 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.95848 -38.69064 -37.01445 -34.83299 -34.69381 -32.48527 -31.04777 -30.57004 -27.87084 -26.36392 -25.10792 -23.51335 -22.95851 -22.09633 -22.05531 -20.47765 -19.72937 -18.03371 -16.57986 -16.45580 -16.07256 -15.82668 -15.71680 -14.84756 -14.66986 -14.48636 -14.36612 -13.92198 -13.45954 -13.31046 -13.05577 -12.66595 -12.43888 -12.17032 -12.00645 -11.66445 -11.55533 -11.35314 -11.32350 -11.22768 -11.14564 -11.02017 -10.92642 -10.86921 -10.33996 -10.25267 -10.16604 -10.10526 -10.00576 -9.69387 -9.52800 -9.33139 -8.83764 -8.53657 -7.71600 -6.20196 -4.26931 3.18855 3.28127 3.30872 3.44667 3.84539 3.99291 4.17855 4.31511 4.88973 4.94733 5.06758 5.10265 5.12997 5.17958 5.22096 5.29458 5.35752 5.51233 5.55153 5.65803 5.76559 5.78620 5.81548 5.84046 5.88109 6.01258 6.05987 6.12323 6.14219 6.17658 6.23823 6.28398 6.32800 6.35515 6.42937 6.47294 6.58512 6.70121 6.83162 6.89604 7.22030 7.30115 7.55601 7.75054 8.04396 8.36594 8.78566 9.05914 9.40523 10.86459 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.010181 B = 0.006396 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.548228 B = 4376.458160 C = 6343.198940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 H 0.101 0.899 4 C 0.523 3.477 5 O -0.575 6.575 6 N -0.592 5.592 7 C 0.238 3.762 8 C -0.533 4.533 9 H 0.062 0.938 10 C 0.066 3.934 11 N -0.890 5.890 12 Si 0.892 3.108 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.283 1.283 16 C 0.152 3.848 17 C -0.154 4.154 18 C -0.180 4.180 19 C -0.181 4.181 20 C -0.070 4.070 21 C -0.152 4.152 22 C 0.062 3.938 23 O -0.388 6.388 24 C 0.065 3.935 25 C -0.153 4.153 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.047 0.953 43 H 0.090 0.910 44 H 0.048 0.952 45 H 0.089 0.911 46 H 0.077 0.923 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.266 -7.763 5.107 9.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.121 4.121 3 H 0.119 0.881 4 C 0.312 3.688 5 O -0.456 6.456 6 N -0.322 5.322 7 C 0.118 3.882 8 C -0.572 4.572 9 H 0.080 0.920 10 C -0.137 4.137 11 N -0.528 5.528 12 Si 0.720 3.280 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.209 1.209 16 C 0.028 3.972 17 C -0.173 4.173 18 C -0.217 4.217 19 C -0.219 4.219 20 C -0.089 4.089 21 C -0.189 4.189 22 C -0.014 4.014 23 O -0.306 6.306 24 C -0.012 4.012 25 C -0.190 4.190 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.096 0.904 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.492 -8.057 5.239 10.225 hybrid contribution -1.075 0.507 -0.639 1.349 sum 2.417 -7.550 4.600 9.165 Atomic orbital electron populations 1.21723 0.92897 1.00993 1.03912 1.21276 0.97842 1.01192 0.91741 0.88101 1.20463 0.76564 0.86938 0.84823 1.90568 1.55166 1.15208 1.84706 1.48220 1.65252 1.09703 1.08994 1.19465 0.97403 0.72908 0.98439 1.21498 0.95909 0.91880 1.47883 0.92001 1.24920 0.97387 0.96429 0.94976 1.69929 1.33462 1.00931 1.48475 0.86532 0.84524 0.78743 0.78251 1.19658 1.20801 1.20905 1.20822 0.91030 0.97290 0.88040 1.22754 0.96208 1.03847 0.94488 1.23031 1.01285 0.94833 1.02522 1.22893 1.03179 0.93862 1.01932 1.21037 0.94788 0.99823 0.93249 1.22295 1.01192 1.00843 0.94618 1.22564 0.81081 0.99663 0.98118 1.87887 1.20574 1.75937 1.46249 1.22544 0.98519 0.94637 0.85497 1.22262 0.96258 1.02108 0.98405 0.93459 0.92273 0.90085 0.94378 0.94628 0.92595 0.91086 0.90290 0.88205 0.88647 0.89338 0.89331 0.89007 0.90516 0.90778 0.90564 0.93503 0.89214 0.93399 0.89293 0.90421 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.65 37.16 0.32 -2.07 16 2 C -0.10 -1.80 1.83 -91.77 -0.17 -1.97 16 3 H 0.10 1.98 5.75 -51.93 -0.30 1.68 16 4 C 0.52 10.58 5.76 -10.98 -0.06 10.51 16 5 O -0.58 -12.48 15.19 5.56 0.08 -12.40 16 6 N -0.59 -12.18 2.46 -175.05 -0.43 -12.61 16 7 C 0.24 5.48 4.89 -5.20 -0.03 5.45 16 8 C -0.53 -13.25 8.19 -34.44 -0.28 -13.54 16 9 H 0.06 1.57 7.24 -52.48 -0.38 1.19 16 10 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -23.94 13.29 55.43 0.74 -23.20 16 12 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 13 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 C 0.15 2.81 5.61 -4.04 -0.02 2.79 16 17 C -0.15 -2.51 5.99 -90.61 -0.54 -3.06 16 18 C -0.18 -2.57 10.18 -26.69 -0.27 -2.84 16 19 C -0.18 -2.44 10.25 -26.69 -0.27 -2.72 16 20 C -0.07 -1.09 1.52 -90.43 -0.14 -1.23 16 21 C -0.15 -2.04 4.99 -26.59 -0.13 -2.17 16 22 C 0.06 0.77 6.84 37.21 0.25 1.02 16 23 O -0.39 -5.54 10.77 -35.23 -0.38 -5.92 16 24 C 0.06 0.86 6.84 37.20 0.25 1.12 16 25 C -0.15 -2.33 5.09 -26.59 -0.14 -2.47 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.91 6.87 -51.93 -0.36 0.55 16 28 H 0.08 1.60 6.24 -51.93 -0.32 1.28 16 29 H 0.04 0.92 5.90 -51.93 -0.31 0.61 16 30 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.07 1.33 7.62 -51.93 -0.40 0.94 16 33 H 0.08 1.45 7.77 -51.93 -0.40 1.05 16 34 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 35 H 0.10 1.37 8.03 -51.93 -0.42 0.95 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.09 1.08 8.14 -51.92 -0.42 0.66 16 38 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.08 1.26 7.86 -51.93 -0.41 0.85 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.08 0.93 6.78 -51.93 -0.35 0.58 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.08 1.30 6.82 -51.93 -0.35 0.94 16 47 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -27.63 367.48 -8.99 -36.63 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -8.20 Total: 6.54 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -1.32 Total: -9.57 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.31 Total: -35.82 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.29 Total: -18.32 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.63 -8.99 -36.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130617858.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.325 kcal (2) G-P(sol) polarization free energy of solvation -27.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds