Wall clock time and date at job start Tue Mar 31 2020 07:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.46959 * 2 1 4 4 C 1.50705 * 109.46911 * 239.99894 * 2 1 3 5 5 O 1.21280 * 119.99893 * 271.87644 * 4 2 1 6 6 N 1.34773 * 119.99557 * 91.87468 * 4 2 1 7 7 C 1.46501 * 120.00375 * 5.07507 * 6 4 2 8 8 C 1.50694 * 109.47512 * 270.37564 * 7 6 4 9 9 H 1.08005 * 119.99957 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00298 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99998 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99889 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47323 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47001 * 119.99667 * 12 10 8 15 15 H 1.48504 * 109.47141 * 239.99511 * 12 10 8 16 16 C 1.46506 * 119.99748 * 184.80229 * 6 4 2 17 17 C 1.53001 * 109.46688 * 274.16003 * 16 6 4 18 18 C 1.53005 * 117.49809 * 243.11979 * 17 16 6 19 19 C 1.53005 * 117.49394 * 174.46300 * 17 16 6 20 20 C 1.52998 * 109.47307 * 120.00387 * 2 1 3 21 21 C 1.53182 * 109.54088 * 299.55265 * 20 2 1 22 22 C 1.53095 * 109.16393 * 183.15330 * 21 20 2 23 23 O 1.42909 * 109.41340 * 57.61069 * 22 21 20 24 24 C 1.42903 * 114.09364 * 298.84217 * 23 22 21 25 25 C 1.53091 * 109.41755 * 61.16138 * 24 23 22 26 26 H 1.09003 * 109.47115 * 186.25682 * 1 2 3 27 27 H 1.09000 * 109.46815 * 306.25103 * 1 2 3 28 28 H 1.08995 * 109.47460 * 66.25243 * 1 2 3 29 29 H 1.09002 * 109.46982 * 30.37909 * 7 6 4 30 30 H 1.09002 * 109.46806 * 150.37270 * 7 6 4 31 31 H 0.96999 * 119.99669 * 180.02562 * 11 10 8 32 32 H 1.08998 * 109.47046 * 34.15685 * 16 6 4 33 33 H 1.09000 * 109.47028 * 154.16247 * 16 6 4 34 34 H 1.09001 * 115.55467 * 28.79598 * 17 16 6 35 35 H 1.08992 * 117.49839 * 0.02562 * 18 17 16 36 36 H 1.08996 * 117.49750 * 145.02914 * 18 17 16 37 37 H 1.09009 * 117.49518 * 214.97820 * 19 17 16 38 38 H 1.08999 * 117.50386 * 359.97438 * 19 17 16 39 39 H 1.08998 * 109.54671 * 59.82204 * 20 2 1 40 40 H 1.08999 * 109.52037 * 303.05933 * 21 20 2 41 41 H 1.09002 * 109.52083 * 63.25070 * 21 20 2 42 42 H 1.08997 * 109.47756 * 297.62636 * 22 21 20 43 43 H 1.08995 * 109.47966 * 177.59087 * 22 21 20 44 44 H 1.09004 * 109.48197 * 301.17243 * 24 23 22 45 45 H 1.09005 * 109.47564 * 181.14059 * 24 23 22 46 46 H 1.08999 * 109.52236 * 182.48437 * 25 24 23 47 47 H 1.08999 * 109.52590 * 62.29116 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.2020 -1.9112 -1.2106 6 7 2.2929 -0.0114 -2.3529 7 6 2.1950 1.4503 -2.3450 8 6 0.7912 1.8618 -2.7066 9 1 0.0464 1.1097 -2.9213 10 6 0.4577 3.1983 -2.7644 11 7 1.3648 4.1142 -2.5034 12 14 -1.2823 3.7083 -3.2133 13 1 -2.1053 2.4969 -3.4594 14 1 -1.8726 4.4899 -2.0971 15 1 -1.2522 4.5436 -4.4408 16 6 2.6799 -0.7130 -3.5795 17 6 4.1911 -0.9522 -3.5749 18 6 5.0164 -0.2777 -4.6726 19 6 4.7772 -1.7891 -4.7139 20 6 2.0401 -0.7213 1.2492 21 6 1.5396 0.0059 2.5010 22 6 2.1189 -0.6756 3.7435 23 8 3.5459 -0.6696 3.6668 24 6 4.0726 -1.3756 2.5416 25 6 3.5719 -0.7222 1.2508 26 1 -0.3633 -1.0216 0.1120 27 1 -0.3633 0.6077 0.8288 28 1 -0.3634 0.4138 -0.9406 29 1 2.4390 1.8253 -1.3510 30 1 2.8938 1.8651 -3.0714 31 1 1.1300 5.0545 -2.5437 32 1 2.1607 -1.6701 -3.6299 33 1 2.4105 -0.1074 -4.4448 34 1 4.6485 -1.0515 -2.5905 35 1 4.4829 0.3368 -5.3976 36 1 6.0169 0.0664 -4.4104 37 1 5.6205 -2.4386 -4.4787 38 1 4.0863 -2.1695 -5.4661 39 1 1.6748 -1.7483 1.2519 40 1 1.8635 1.0463 2.4718 41 1 0.4510 -0.0368 2.5363 42 1 1.7618 -1.7042 3.7935 43 1 1.8005 -0.1363 4.6356 44 1 3.7412 -2.4135 2.5759 45 1 5.1618 -1.3406 2.5679 46 1 3.9366 -1.2857 0.3920 47 1 3.9368 0.3034 1.1964 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130617858.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:59 Heat of formation + Delta-G solvation = -92.515051 kcal Electronic energy + Delta-G solvation = -25558.475022 eV Core-core repulsion = 22126.684351 eV Total energy + Delta-G solvation = -3431.790671 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.41569 -39.96406 -38.31348 -36.42830 -36.14500 -34.40073 -32.22910 -31.79686 -29.64498 -27.99298 -26.37054 -25.02854 -24.43892 -23.42681 -23.22494 -21.77560 -20.98669 -19.65951 -18.49368 -18.00774 -17.53712 -16.98048 -16.89395 -16.43325 -16.17167 -15.87558 -15.67162 -15.17175 -14.77005 -14.69311 -14.46807 -14.27516 -14.04465 -13.65488 -13.42579 -13.26959 -13.05424 -12.86071 -12.72395 -12.61840 -12.53781 -12.45600 -12.36109 -12.23508 -11.99289 -11.67001 -11.58827 -11.50665 -11.34890 -11.14324 -10.83087 -10.66193 -10.46931 -10.31675 -9.44297 -8.18283 -6.31495 1.39978 1.44007 1.53483 1.80954 2.27810 2.44833 2.93700 2.98351 3.12293 3.60274 3.66515 3.84644 3.87524 3.97726 4.08598 4.09246 4.13710 4.28626 4.36155 4.38774 4.44773 4.50340 4.64708 4.66014 4.74439 4.77735 4.79526 4.82575 4.84209 4.91487 4.93581 4.99322 4.99854 5.09375 5.12529 5.16947 5.24421 5.24674 5.27381 5.41765 5.48480 5.69621 5.87777 6.07675 6.27060 6.60166 6.84491 7.33923 7.45047 8.87716 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.010181 B = 0.006396 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.548228 B = 4376.458160 C = 6343.198940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 H 0.081 0.919 4 C 0.521 3.479 5 O -0.590 6.590 6 N -0.597 5.597 7 C 0.256 3.744 8 C -0.533 4.533 9 H 0.055 0.945 10 C 0.024 3.976 11 N -0.920 5.920 12 Si 0.951 3.049 13 H -0.269 1.269 14 H -0.277 1.277 15 H -0.281 1.281 16 C 0.151 3.849 17 C -0.178 4.178 18 C -0.175 4.175 19 C -0.156 4.156 20 C -0.065 4.065 21 C -0.147 4.147 22 C 0.060 3.940 23 O -0.401 6.401 24 C 0.069 3.931 25 C -0.149 4.149 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.026 0.974 30 H 0.017 0.983 31 H 0.266 0.734 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.112 0.888 44 H 0.057 0.943 45 H 0.103 0.897 46 H 0.058 0.942 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.789 -8.494 5.684 10.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.118 4.118 3 H 0.099 0.901 4 C 0.310 3.690 5 O -0.473 6.473 6 N -0.326 5.326 7 C 0.135 3.865 8 C -0.572 4.572 9 H 0.073 0.927 10 C -0.176 4.176 11 N -0.560 5.560 12 Si 0.777 3.223 13 H -0.194 1.194 14 H -0.203 1.203 15 H -0.207 1.207 16 C 0.028 3.972 17 C -0.198 4.198 18 C -0.211 4.211 19 C -0.194 4.194 20 C -0.084 4.084 21 C -0.185 4.185 22 C -0.016 4.016 23 O -0.320 6.320 24 C -0.008 4.008 25 C -0.187 4.187 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.130 0.870 44 H 0.076 0.924 45 H 0.121 0.879 46 H 0.077 0.923 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.017 -8.803 5.810 10.970 hybrid contribution -0.902 0.708 -0.849 1.427 sum 2.115 -8.095 4.961 9.727 Atomic orbital electron populations 1.21677 0.92126 1.01847 1.03326 1.21283 0.98411 1.00054 0.92037 0.90062 1.20841 0.76060 0.86835 0.85216 1.90546 1.55916 1.15810 1.85013 1.48225 1.65504 1.08826 1.10048 1.19068 0.96192 0.74267 0.96939 1.21610 0.96321 0.91854 1.47399 0.92692 1.25588 1.00682 0.96447 0.94930 1.70023 1.35182 1.01238 1.49514 0.85611 0.80454 0.78305 0.77970 1.19358 1.20283 1.20727 1.20883 0.92700 0.96535 0.87049 1.22553 0.94794 1.07552 0.94882 1.23089 1.01242 0.95790 1.01024 1.23009 1.03126 0.93500 0.99750 1.21000 0.94912 0.99429 0.93048 1.22278 1.02176 0.99999 0.94039 1.22736 0.80031 1.00675 0.98148 1.87878 1.21801 1.76138 1.46180 1.22553 0.99412 0.94692 0.84110 1.22202 0.96184 1.01289 0.99048 0.92420 0.90096 0.92749 0.95658 0.96535 0.92446 0.91606 0.90649 0.89882 0.88782 0.88202 0.87510 0.87807 0.90893 0.91816 0.89008 0.92157 0.86971 0.92443 0.87855 0.92312 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 8.65 71.98 0.62 -3.91 16 2 C -0.10 -3.55 1.83 -11.54 -0.02 -3.57 16 3 H 0.08 3.31 5.75 -2.39 -0.01 3.29 16 4 C 0.52 21.57 5.76 87.66 0.50 22.07 16 5 O -0.59 -25.99 15.19 -3.03 -0.05 -26.04 16 6 N -0.60 -25.38 2.46 -826.14 -2.04 -27.42 16 7 C 0.26 12.24 4.89 85.63 0.42 12.66 16 8 C -0.53 -26.99 8.19 25.60 0.21 -26.78 16 9 H 0.05 2.83 7.24 -2.91 -0.02 2.81 16 10 C 0.02 1.22 5.46 84.65 0.46 1.69 16 11 N -0.92 -50.08 13.29 21.45 0.28 -49.80 16 12 Si 0.95 41.02 29.54 68.60 2.03 43.04 16 13 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 14 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 15 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 16 C 0.15 5.73 5.61 86.38 0.48 6.21 16 17 C -0.18 -5.88 5.99 -10.79 -0.06 -5.94 16 18 C -0.17 -4.85 10.18 30.62 0.31 -4.54 16 19 C -0.16 -3.97 10.25 30.62 0.31 -3.65 16 20 C -0.06 -2.00 1.52 -10.67 -0.02 -2.02 16 21 C -0.15 -3.73 4.99 30.69 0.15 -3.58 16 22 C 0.06 1.33 6.84 72.01 0.49 1.83 16 23 O -0.40 -10.73 10.77 -148.98 -1.60 -12.33 16 24 C 0.07 1.76 6.84 72.01 0.49 2.25 16 25 C -0.15 -4.59 5.09 30.68 0.16 -4.44 16 26 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.08 2.38 6.87 -2.39 -0.02 2.36 16 28 H 0.05 2.15 6.24 -2.39 -0.01 2.14 16 29 H 0.03 1.28 5.90 -2.39 -0.01 1.27 16 30 H 0.02 0.85 8.07 -2.39 -0.02 0.83 16 31 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 32 H 0.07 2.52 7.62 -2.39 -0.02 2.50 16 33 H 0.08 2.84 7.77 -2.39 -0.02 2.82 16 34 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.09 2.64 8.03 -2.39 -0.02 2.62 16 36 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 38 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.07 2.32 7.86 -2.39 -0.02 2.30 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.09 2.03 6.78 -2.39 -0.02 2.01 16 42 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 46 H 0.06 2.01 6.82 -2.39 -0.02 1.99 16 47 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -59.01 367.48 4.08 -54.94 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.93 Total: 29.34 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 4.52 Total: -11.73 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -1.75 Total: -77.22 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -1.65 Total: -38.37 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Total: -59.01 4.08 -54.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130617858.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.577 kcal (2) G-P(sol) polarization free energy of solvation -59.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds