Wall clock time and date at job start Tue Mar 31 2020 07:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47197 * 2 1 4 4 C 1.50700 * 109.47307 * 120.00201 * 2 1 3 5 5 O 1.21286 * 120.00040 * 98.20411 * 4 2 1 6 6 N 1.34778 * 119.99968 * 278.20125 * 4 2 1 7 7 C 1.46497 * 119.99690 * 4.48382 * 6 4 2 8 8 C 1.50700 * 109.46803 * 264.77376 * 7 6 4 9 9 H 1.07993 * 120.00154 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99657 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00392 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99756 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.46703 * 90.00371 * 12 10 8 14 14 H 1.48496 * 109.46950 * 209.99900 * 12 10 8 15 15 H 1.48499 * 109.47085 * 330.00540 * 12 10 8 16 16 C 1.46498 * 119.99796 * 184.47756 * 6 4 2 17 17 C 1.53006 * 109.46979 * 266.42647 * 16 6 4 18 18 C 1.52999 * 117.51719 * 116.28776 * 17 16 6 19 19 C 1.53004 * 117.49876 * 184.91932 * 17 16 6 20 20 C 1.53002 * 109.47150 * 240.00079 * 2 1 3 21 21 C 1.53178 * 109.54657 * 179.82395 * 20 2 1 22 22 C 1.53098 * 109.15762 * 183.24216 * 21 20 2 23 23 O 1.42907 * 109.49041 * 57.47304 * 22 21 20 24 24 C 1.42903 * 114.09579 * 298.88925 * 23 22 21 25 25 C 1.53095 * 109.41422 * 61.15360 * 24 23 22 26 26 H 1.08998 * 109.47246 * 293.44210 * 1 2 3 27 27 H 1.08998 * 109.47237 * 53.44074 * 1 2 3 28 28 H 1.09004 * 109.47138 * 173.44139 * 1 2 3 29 29 H 1.08994 * 109.47507 * 24.77760 * 7 6 4 30 30 H 1.09001 * 109.47090 * 144.77688 * 7 6 4 31 31 H 0.96997 * 120.00417 * 179.97438 * 11 10 8 32 32 H 1.09000 * 109.46910 * 146.43336 * 16 6 4 33 33 H 1.08994 * 109.47550 * 26.42288 * 16 6 4 34 34 H 1.09000 * 115.55402 * 330.58481 * 17 16 6 35 35 H 1.09000 * 117.49683 * 214.97207 * 18 17 16 36 36 H 1.09005 * 117.50038 * 359.97438 * 18 17 16 37 37 H 1.09009 * 117.49589 * 359.97271 * 19 17 16 38 38 H 1.08992 * 117.50495 * 145.00082 * 19 17 16 39 39 H 1.09000 * 109.54383 * 300.00006 * 20 2 1 40 40 H 1.09005 * 109.51921 * 303.05687 * 21 20 2 41 41 H 1.09000 * 109.52136 * 63.24214 * 21 20 2 42 42 H 1.08998 * 109.40884 * 297.48982 * 22 21 20 43 43 H 1.09002 * 109.48498 * 177.49941 * 22 21 20 44 44 H 1.09003 * 109.48385 * 301.17253 * 24 23 22 45 45 H 1.09001 * 109.47805 * 181.13977 * 24 23 22 46 46 H 1.09000 * 109.51884 * 182.48152 * 25 24 23 47 47 H 1.09008 * 109.57147 * 62.33056 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3758 -1.8717 1.1625 6 7 2.1000 -0.0554 2.4064 7 6 1.5940 1.3154 2.5114 8 6 2.7307 2.2863 2.3214 9 1 3.7300 1.9190 2.1401 10 6 2.4948 3.6436 2.3779 11 7 1.2778 4.0909 2.5981 12 14 3.9040 4.8472 2.1431 13 1 4.0345 5.1813 0.7022 14 1 3.6311 6.0856 2.9157 15 1 5.1665 4.2312 2.6248 16 6 2.6794 -0.7143 3.5795 17 6 1.5664 -1.3767 4.3941 18 6 1.5972 -2.9008 4.5245 19 6 1.9542 -2.0228 5.7257 20 6 2.0399 -0.7212 -1.2493 21 6 3.5717 -0.7184 -1.2532 22 6 4.0720 -1.3699 -2.5452 23 8 3.5400 -0.6676 -3.6704 24 6 2.1129 -0.6791 -3.7438 25 6 1.5339 0.0021 -2.5010 26 1 -0.3633 0.4088 0.9428 27 1 -0.3633 0.6121 -0.8254 28 1 -0.3633 -1.0210 -0.1174 29 1 0.8397 1.4842 1.7429 30 1 1.1496 1.4643 3.4955 31 1 1.1119 5.0457 2.6383 32 1 3.1900 0.0252 4.1963 33 1 3.3926 -1.4721 3.2554 34 1 0.5898 -0.8965 4.3333 35 1 0.6409 -3.4233 4.5496 36 1 2.4104 -3.4320 4.0297 37 1 3.0024 -1.9763 6.0212 38 1 1.2329 -1.9677 6.5409 39 1 1.6773 -1.7491 -1.2505 40 1 3.9342 0.3083 -1.2004 41 1 3.9392 -1.2800 -0.3944 42 1 3.7445 -2.4090 -2.5773 43 1 5.1609 -1.3308 -2.5741 44 1 1.7596 -1.7092 -3.7915 45 1 1.7906 -0.1424 -4.6361 46 1 0.4454 -0.0448 -2.5339 47 1 1.8530 1.0441 -2.4737 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130618075.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:03 Heat of formation + Delta-G solvation = -79.945749 kcal Electronic energy + Delta-G solvation = -25531.202031 eV Core-core repulsion = 22099.956405 eV Total energy + Delta-G solvation = -3431.245625 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.95867 -38.66813 -36.99628 -34.82653 -34.72724 -32.48189 -31.01511 -30.64659 -27.77523 -26.35648 -25.22466 -23.45660 -23.02013 -22.14248 -21.91188 -20.37010 -19.72523 -18.11120 -16.63618 -16.54827 -15.90751 -15.78911 -15.62789 -14.85049 -14.61619 -14.45041 -14.34452 -13.90688 -13.56739 -13.41587 -13.09600 -12.78064 -12.43468 -12.04880 -11.88451 -11.85904 -11.55723 -11.35655 -11.25169 -11.22238 -11.10427 -11.00122 -10.90924 -10.70408 -10.41205 -10.27782 -10.20117 -10.08476 -9.99092 -9.70310 -9.55778 -9.31685 -8.83654 -8.54320 -7.69874 -6.19711 -4.26906 3.21694 3.29107 3.31593 3.44254 3.85869 4.03222 4.18917 4.32362 4.91891 4.97421 5.07985 5.10470 5.13627 5.21887 5.24228 5.30660 5.37653 5.51448 5.54915 5.69122 5.72047 5.79320 5.80864 5.85208 5.85878 5.97636 6.05225 6.14944 6.15584 6.21249 6.23908 6.26245 6.30059 6.36995 6.40052 6.51693 6.55936 6.64032 6.76750 6.86228 7.20441 7.34454 7.56171 7.74763 8.04689 8.38810 8.78645 9.05908 9.41244 10.86817 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.009326 B = 0.006742 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3001.710711 B = 4151.797804 C = 6168.325282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 H 0.109 0.891 4 C 0.524 3.476 5 O -0.573 6.573 6 N -0.592 5.592 7 C 0.232 3.768 8 C -0.537 4.537 9 H 0.060 0.940 10 C 0.066 3.934 11 N -0.891 5.891 12 Si 0.894 3.106 13 H -0.278 1.278 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.150 3.850 17 C -0.157 4.157 18 C -0.175 4.175 19 C -0.181 4.181 20 C -0.065 4.065 21 C -0.154 4.154 22 C 0.065 3.935 23 O -0.388 6.388 24 C 0.063 3.937 25 C -0.153 4.153 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.033 0.967 31 H 0.265 0.735 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.047 0.953 43 H 0.089 0.911 44 H 0.046 0.954 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.750 -9.060 -4.584 10.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.126 4.126 3 H 0.127 0.873 4 C 0.312 3.688 5 O -0.454 6.454 6 N -0.321 5.321 7 C 0.112 3.888 8 C -0.576 4.576 9 H 0.078 0.922 10 C -0.137 4.137 11 N -0.529 5.529 12 Si 0.721 3.279 13 H -0.204 1.204 14 H -0.211 1.211 15 H -0.198 1.198 16 C 0.026 3.974 17 C -0.177 4.177 18 C -0.212 4.212 19 C -0.219 4.219 20 C -0.084 4.084 21 C -0.191 4.191 22 C -0.012 4.012 23 O -0.307 6.307 24 C -0.014 4.014 25 C -0.191 4.191 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.065 0.935 43 H 0.107 0.893 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.093 0.907 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.567 -9.363 -4.708 10.495 hybrid contribution 0.431 0.862 0.337 1.021 sum -0.136 -8.501 -4.370 9.559 Atomic orbital electron populations 1.21767 0.93545 1.01450 1.02903 1.21307 0.97038 1.02050 0.92208 0.87267 1.20433 0.77479 0.86170 0.84673 1.90553 1.51585 1.17239 1.86043 1.48180 1.59288 1.16506 1.08165 1.19545 0.95146 0.75490 0.98618 1.21484 0.95089 0.90843 1.50175 0.92162 1.24922 0.95753 0.98258 0.94758 1.69912 1.19712 1.14572 1.48690 0.86558 0.82460 0.80498 0.78373 1.20427 1.21078 1.19809 1.20820 0.93405 0.96487 0.86656 1.22772 1.01417 0.94911 0.98562 1.22938 1.02645 0.93682 1.01912 1.22904 1.01932 1.05382 0.91691 1.20940 0.95130 0.99458 0.92824 1.22281 0.95997 1.02375 0.98471 1.22555 0.98473 0.94610 0.85554 1.87887 1.20406 1.76111 1.46278 1.22545 0.81204 0.99566 0.98053 1.22307 1.00966 1.01022 0.94769 0.91525 0.91849 0.92980 0.93538 0.94905 0.92538 0.90181 0.90971 0.87963 0.89625 0.88838 0.88986 0.89222 0.90719 0.91144 0.89844 0.93493 0.89313 0.93563 0.89282 0.90738 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.27 37.15 0.31 -1.90 16 2 C -0.10 -1.87 1.47 -91.77 -0.13 -2.00 16 3 H 0.11 2.19 6.94 -51.93 -0.36 1.83 16 4 C 0.52 10.51 6.13 -10.98 -0.07 10.44 16 5 O -0.57 -12.21 14.37 5.55 0.08 -12.13 16 6 N -0.59 -12.20 2.46 -175.06 -0.43 -12.63 16 7 C 0.23 5.36 4.73 -5.20 -0.02 5.33 16 8 C -0.54 -13.68 9.05 -34.44 -0.31 -13.99 16 9 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 10 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 11 N -0.89 -24.12 13.29 55.43 0.74 -23.38 16 12 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 16 C 0.15 2.80 5.72 -4.04 -0.02 2.77 16 17 C -0.16 -2.59 6.01 -90.61 -0.54 -3.14 16 18 C -0.17 -2.55 10.18 -26.73 -0.27 -2.82 16 19 C -0.18 -2.47 10.25 -26.73 -0.27 -2.74 16 20 C -0.06 -1.01 1.47 -90.44 -0.13 -1.15 16 21 C -0.15 -2.47 5.08 -26.59 -0.14 -2.60 16 22 C 0.06 0.90 6.84 37.21 0.25 1.16 16 23 O -0.39 -5.73 10.77 -35.23 -0.38 -6.11 16 24 C 0.06 0.79 6.84 37.21 0.25 1.04 16 25 C -0.15 -2.06 4.98 -26.59 -0.13 -2.19 16 26 H 0.07 1.15 6.43 -51.93 -0.33 0.81 16 27 H 0.06 0.89 6.88 -51.93 -0.36 0.53 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 1.09 4.70 -51.93 -0.24 0.85 16 30 H 0.03 0.81 8.11 -51.93 -0.42 0.39 16 31 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 33 H 0.07 1.35 7.12 -51.93 -0.37 0.98 16 34 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.40 8.03 -51.93 -0.42 0.98 16 37 H 0.09 1.17 8.14 -51.92 -0.42 0.75 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.21 7.89 -51.93 -0.41 0.80 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.08 1.48 6.45 -51.93 -0.34 1.14 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.07 0.89 6.78 -51.93 -0.35 0.53 16 47 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 LS Contribution 367.33 15.07 5.54 5.54 Total: -1.00 -27.86 367.33 -9.03 -36.89 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -8.22 Total: 6.61 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -1.33 Total: -10.18 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.31 Total: -36.01 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.30 Total: -18.24 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.86 -9.03 -36.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130618075.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.056 kcal (2) G-P(sol) polarization free energy of solvation -27.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds