Wall clock time and date at job start Tue Mar 31 2020 07:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47197 * 2 1 4 4 C 1.50700 * 109.47307 * 120.00201 * 2 1 3 5 5 O 1.21286 * 120.00040 * 98.20411 * 4 2 1 6 6 N 1.34778 * 119.99968 * 278.20125 * 4 2 1 7 7 C 1.46497 * 119.99690 * 4.48382 * 6 4 2 8 8 C 1.50700 * 109.46803 * 264.77376 * 7 6 4 9 9 H 1.07993 * 120.00154 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99657 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00392 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99756 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.46703 * 90.00371 * 12 10 8 14 14 H 1.48496 * 109.46950 * 209.99900 * 12 10 8 15 15 H 1.48499 * 109.47085 * 330.00540 * 12 10 8 16 16 C 1.46498 * 119.99796 * 184.47756 * 6 4 2 17 17 C 1.53006 * 109.46979 * 266.42647 * 16 6 4 18 18 C 1.52999 * 117.51719 * 116.28776 * 17 16 6 19 19 C 1.53004 * 117.49876 * 184.91932 * 17 16 6 20 20 C 1.53002 * 109.47150 * 240.00079 * 2 1 3 21 21 C 1.53178 * 109.54657 * 179.82395 * 20 2 1 22 22 C 1.53098 * 109.15762 * 183.24216 * 21 20 2 23 23 O 1.42907 * 109.49041 * 57.47304 * 22 21 20 24 24 C 1.42903 * 114.09579 * 298.88925 * 23 22 21 25 25 C 1.53095 * 109.41422 * 61.15360 * 24 23 22 26 26 H 1.08998 * 109.47246 * 293.44210 * 1 2 3 27 27 H 1.08998 * 109.47237 * 53.44074 * 1 2 3 28 28 H 1.09004 * 109.47138 * 173.44139 * 1 2 3 29 29 H 1.08994 * 109.47507 * 24.77760 * 7 6 4 30 30 H 1.09001 * 109.47090 * 144.77688 * 7 6 4 31 31 H 0.96997 * 120.00417 * 179.97438 * 11 10 8 32 32 H 1.09000 * 109.46910 * 146.43336 * 16 6 4 33 33 H 1.08994 * 109.47550 * 26.42288 * 16 6 4 34 34 H 1.09000 * 115.55402 * 330.58481 * 17 16 6 35 35 H 1.09000 * 117.49683 * 214.97207 * 18 17 16 36 36 H 1.09005 * 117.50038 * 359.97438 * 18 17 16 37 37 H 1.09009 * 117.49589 * 359.97271 * 19 17 16 38 38 H 1.08992 * 117.50495 * 145.00082 * 19 17 16 39 39 H 1.09000 * 109.54383 * 300.00006 * 20 2 1 40 40 H 1.09005 * 109.51921 * 303.05687 * 21 20 2 41 41 H 1.09000 * 109.52136 * 63.24214 * 21 20 2 42 42 H 1.08998 * 109.40884 * 297.48982 * 22 21 20 43 43 H 1.09002 * 109.48498 * 177.49941 * 22 21 20 44 44 H 1.09003 * 109.48385 * 301.17253 * 24 23 22 45 45 H 1.09001 * 109.47805 * 181.13977 * 24 23 22 46 46 H 1.09000 * 109.51884 * 182.48152 * 25 24 23 47 47 H 1.09008 * 109.57147 * 62.33056 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3758 -1.8717 1.1625 6 7 2.1000 -0.0554 2.4064 7 6 1.5940 1.3154 2.5114 8 6 2.7307 2.2863 2.3214 9 1 3.7300 1.9190 2.1401 10 6 2.4948 3.6436 2.3779 11 7 1.2778 4.0909 2.5981 12 14 3.9040 4.8472 2.1431 13 1 4.0345 5.1813 0.7022 14 1 3.6311 6.0856 2.9157 15 1 5.1665 4.2312 2.6248 16 6 2.6794 -0.7143 3.5795 17 6 1.5664 -1.3767 4.3941 18 6 1.5972 -2.9008 4.5245 19 6 1.9542 -2.0228 5.7257 20 6 2.0399 -0.7212 -1.2493 21 6 3.5717 -0.7184 -1.2532 22 6 4.0720 -1.3699 -2.5452 23 8 3.5400 -0.6676 -3.6704 24 6 2.1129 -0.6791 -3.7438 25 6 1.5339 0.0021 -2.5010 26 1 -0.3633 0.4088 0.9428 27 1 -0.3633 0.6121 -0.8254 28 1 -0.3633 -1.0210 -0.1174 29 1 0.8397 1.4842 1.7429 30 1 1.1496 1.4643 3.4955 31 1 1.1119 5.0457 2.6383 32 1 3.1900 0.0252 4.1963 33 1 3.3926 -1.4721 3.2554 34 1 0.5898 -0.8965 4.3333 35 1 0.6409 -3.4233 4.5496 36 1 2.4104 -3.4320 4.0297 37 1 3.0024 -1.9763 6.0212 38 1 1.2329 -1.9677 6.5409 39 1 1.6773 -1.7491 -1.2505 40 1 3.9342 0.3083 -1.2004 41 1 3.9392 -1.2800 -0.3944 42 1 3.7445 -2.4090 -2.5773 43 1 5.1609 -1.3308 -2.5741 44 1 1.7596 -1.7092 -3.7915 45 1 1.7906 -0.1424 -4.6361 46 1 0.4454 -0.0448 -2.5339 47 1 1.8530 1.0441 -2.4737 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130618075.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:02 Heat of formation + Delta-G solvation = -93.713664 kcal Electronic energy + Delta-G solvation = -25531.799052 eV Core-core repulsion = 22099.956405 eV Total energy + Delta-G solvation = -3431.842647 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.41479 -39.95239 -38.29647 -36.45303 -36.13983 -34.42560 -32.24573 -31.82825 -29.57990 -27.95439 -26.49307 -24.98296 -24.48059 -23.40360 -23.16204 -21.67873 -21.01007 -19.69761 -18.59344 -18.06552 -17.35320 -16.99973 -16.88031 -16.33378 -16.25119 -15.86309 -15.61624 -15.14506 -14.99112 -14.74965 -14.53336 -14.23814 -14.03925 -13.63178 -13.38191 -13.23813 -13.08394 -12.81172 -12.71892 -12.61159 -12.48364 -12.41427 -12.36116 -12.20945 -12.05569 -11.73420 -11.65780 -11.49376 -11.31435 -11.14340 -10.85713 -10.66282 -10.49358 -10.29782 -9.42470 -8.20875 -6.34874 1.38902 1.41334 1.49849 1.81906 2.28446 2.43663 2.93942 2.99505 3.09088 3.62633 3.68545 3.82759 3.85953 3.99802 4.07162 4.10884 4.15664 4.28798 4.39021 4.42234 4.44812 4.47706 4.64486 4.66152 4.75147 4.77779 4.80568 4.81490 4.84853 4.92130 4.94856 4.97614 4.99448 5.07025 5.11251 5.18108 5.23685 5.25082 5.28104 5.37203 5.49501 5.66496 5.87228 6.06112 6.28384 6.61147 6.83191 7.32284 7.44760 8.84387 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.009326 B = 0.006742 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3001.710711 B = 4151.797804 C = 6168.325282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.102 4.102 3 H 0.082 0.918 4 C 0.520 3.480 5 O -0.585 6.585 6 N -0.597 5.597 7 C 0.249 3.751 8 C -0.545 4.545 9 H 0.049 0.951 10 C 0.025 3.975 11 N -0.917 5.917 12 Si 0.950 3.050 13 H -0.274 1.274 14 H -0.279 1.279 15 H -0.273 1.273 16 C 0.150 3.850 17 C -0.182 4.182 18 C -0.168 4.168 19 C -0.158 4.158 20 C -0.060 4.060 21 C -0.151 4.151 22 C 0.070 3.930 23 O -0.402 6.402 24 C 0.060 3.940 25 C -0.148 4.148 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.013 0.987 31 H 0.268 0.732 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.100 0.900 44 H 0.062 0.938 45 H 0.112 0.888 46 H 0.095 0.905 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.895 -9.744 -5.368 11.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.123 4.123 3 H 0.101 0.899 4 C 0.310 3.690 5 O -0.468 6.468 6 N -0.326 5.326 7 C 0.129 3.871 8 C -0.584 4.584 9 H 0.067 0.933 10 C -0.175 4.175 11 N -0.556 5.556 12 Si 0.776 3.224 13 H -0.200 1.200 14 H -0.205 1.205 15 H -0.197 1.197 16 C 0.027 3.973 17 C -0.202 4.202 18 C -0.205 4.205 19 C -0.195 4.195 20 C -0.079 4.079 21 C -0.189 4.189 22 C -0.007 4.007 23 O -0.322 6.322 24 C -0.016 4.016 25 C -0.186 4.186 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.031 0.969 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.118 0.882 44 H 0.080 0.920 45 H 0.130 0.870 46 H 0.113 0.887 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.709 -10.060 -5.488 11.481 hybrid contribution 0.478 1.042 0.613 1.300 sum -0.231 -9.018 -4.875 10.254 Atomic orbital electron populations 1.21736 0.91916 1.02595 1.02816 1.21303 0.98374 1.00375 0.92242 0.89934 1.20849 0.77038 0.86126 0.85034 1.90532 1.52191 1.17782 1.86264 1.48185 1.59434 1.15773 1.09256 1.19169 0.94338 0.76456 0.97179 1.21648 0.95115 0.91634 1.50006 0.93279 1.25576 0.97785 0.99680 0.94506 1.69992 1.21169 1.15012 1.49421 0.85673 0.79780 0.78583 0.78396 1.19979 1.20480 1.19748 1.20856 0.94188 0.96055 0.86213 1.22595 1.00072 0.96295 1.01220 1.22968 1.03186 0.92125 1.02205 1.23021 1.03091 1.02447 0.90930 1.20921 0.94755 0.99371 0.92845 1.22219 0.96494 1.01089 0.99114 1.22540 0.99218 0.94784 0.84152 1.87875 1.21852 1.76319 1.46124 1.22745 0.79986 1.00730 0.98175 1.22289 1.02245 0.99954 0.94069 0.93346 0.89680 0.91631 0.93927 0.96852 0.92314 0.91145 0.91359 0.89284 0.88332 0.89319 0.87929 0.87294 0.90693 0.93010 0.91976 0.92304 0.88165 0.92005 0.87017 0.88677 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 8.27 71.98 0.60 -3.57 16 2 C -0.10 -3.67 1.47 -11.54 -0.02 -3.68 16 3 H 0.08 3.43 6.94 -2.39 -0.02 3.42 16 4 C 0.52 21.34 6.13 87.66 0.54 21.88 16 5 O -0.59 -25.24 14.37 -3.05 -0.04 -25.28 16 6 N -0.60 -25.47 2.46 -826.16 -2.03 -27.50 16 7 C 0.25 11.96 4.73 85.63 0.40 12.36 16 8 C -0.55 -28.51 9.05 25.60 0.23 -28.28 16 9 H 0.05 2.63 7.81 -2.91 -0.02 2.60 16 10 C 0.03 1.32 5.46 84.66 0.46 1.78 16 11 N -0.92 -50.19 13.29 21.45 0.28 -49.90 16 12 Si 0.95 42.02 29.54 68.60 2.03 44.05 16 13 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 14 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 16 C 0.15 5.75 5.72 86.38 0.49 6.25 16 17 C -0.18 -6.03 6.01 -10.79 -0.06 -6.09 16 18 C -0.17 -4.70 10.18 30.60 0.31 -4.39 16 19 C -0.16 -4.02 10.25 30.60 0.31 -3.71 16 20 C -0.06 -1.85 1.47 -10.68 -0.02 -1.87 16 21 C -0.15 -4.90 5.08 30.69 0.16 -4.74 16 22 C 0.07 1.86 6.84 72.01 0.49 2.35 16 23 O -0.40 -11.15 10.77 -148.98 -1.60 -12.75 16 24 C 0.06 1.33 6.84 72.01 0.49 1.83 16 25 C -0.15 -3.73 4.98 30.68 0.15 -3.58 16 26 H 0.05 1.68 6.43 -2.39 -0.02 1.66 16 27 H 0.08 2.26 6.88 -2.39 -0.02 2.24 16 28 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.04 2.08 4.70 -2.39 -0.01 2.07 16 30 H 0.01 0.69 8.11 -2.39 -0.02 0.67 16 31 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 32 H 0.07 2.76 8.10 -2.39 -0.02 2.74 16 33 H 0.07 2.63 7.12 -2.39 -0.02 2.61 16 34 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 35 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.09 2.58 8.03 -2.38 -0.02 2.56 16 37 H 0.10 2.41 8.14 -2.38 -0.02 2.40 16 38 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.07 2.33 7.89 -2.39 -0.02 2.31 16 40 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.06 2.25 6.45 -2.39 -0.02 2.24 16 42 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.09 2.00 6.78 -2.39 -0.02 1.98 16 47 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -59.77 367.33 4.11 -55.66 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 0.93 Total: 29.19 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 4.55 Total: -13.46 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -1.74 Total: -77.40 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -1.65 Total: -38.03 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -59.77 4.11 -55.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130618075.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.055 kcal (2) G-P(sol) polarization free energy of solvation -59.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds