Wall clock time and date at job start Tue Mar 31 2020 07:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20758 * 119.99907 * 2 1 4 4 C 1.50699 * 119.99785 * 180.02562 * 2 1 3 5 5 C 1.52996 * 109.47232 * 179.97438 * 4 2 1 6 6 C 1.53008 * 109.46896 * 60.00253 * 5 4 2 7 7 C 1.53005 * 109.47571 * 300.00448 * 5 4 2 8 8 C 1.53002 * 109.47340 * 179.97438 * 5 4 2 9 9 C 1.50706 * 109.46925 * 180.02562 * 8 5 4 10 10 O 1.21279 * 120.00072 * 0.02562 * 9 8 5 11 11 N 1.34777 * 119.99762 * 179.97438 * 9 8 5 12 12 C 1.46496 * 120.00258 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.46871 * 90.00155 * 12 11 9 14 14 H 1.07998 * 120.00222 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00011 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99586 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99962 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46972 * 90.00295 * 17 15 13 19 19 H 1.48503 * 109.47158 * 209.99536 * 17 15 13 20 20 H 1.48497 * 109.47137 * 329.99960 * 17 15 13 21 21 C 1.46504 * 119.99858 * 0.02562 * 11 9 8 22 22 C 1.52999 * 109.47507 * 89.99839 * 21 11 9 23 23 C 1.53003 * 117.49748 * 243.62506 * 22 21 11 24 24 C 1.52992 * 117.50002 * 174.99956 * 22 21 11 25 25 H 1.08998 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46875 * 299.99242 * 1 2 3 27 27 H 1.09000 * 109.47392 * 59.99523 * 1 2 3 28 28 H 1.09004 * 109.47103 * 59.99841 * 4 2 1 29 29 H 1.09000 * 109.47247 * 299.99719 * 4 2 1 30 30 H 1.09002 * 109.47288 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.46630 * 299.99857 * 6 5 4 32 32 H 1.09000 * 109.47188 * 60.00007 * 6 5 4 33 33 H 1.08996 * 109.46524 * 299.99684 * 7 5 4 34 34 H 1.09001 * 109.46962 * 59.99521 * 7 5 4 35 35 H 1.08992 * 109.47199 * 180.02562 * 7 5 4 36 36 H 1.09000 * 109.46497 * 60.00561 * 8 5 4 37 37 H 1.09000 * 109.47312 * 300.00340 * 8 5 4 38 38 H 1.09000 * 109.47710 * 210.00590 * 12 11 9 39 39 H 1.09000 * 109.46883 * 330.00634 * 12 11 9 40 40 H 0.97008 * 119.99716 * 180.02562 * 16 15 13 41 41 H 1.09005 * 109.47121 * 209.99861 * 21 11 9 42 42 H 1.08997 * 109.47160 * 329.99513 * 21 11 9 43 43 H 1.09002 * 115.54589 * 29.32423 * 22 21 11 44 44 H 1.08995 * 117.49876 * 359.97438 * 23 22 21 45 45 H 1.09002 * 117.49846 * 145.02378 * 23 22 21 46 46 H 1.09007 * 117.49671 * 214.97834 * 24 22 21 47 47 H 1.09002 * 117.50190 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2604 -1.3051 -0.0006 5 6 3.7646 -1.0256 -0.0011 6 6 4.1348 -0.2236 1.2483 7 6 4.1339 -0.2230 -1.2503 8 6 4.5296 -2.3507 -0.0011 9 6 6.0113 -2.0753 -0.0009 10 8 6.4156 -0.9318 -0.0004 11 7 6.8871 -3.0997 -0.0003 12 6 8.3274 -2.8321 -0.0008 13 6 8.8215 -2.7394 1.4199 14 1 8.1317 -2.8674 2.2410 15 6 10.1542 -2.4911 1.6715 16 7 10.9941 -2.3347 0.6716 17 14 10.7665 -2.3754 3.4325 18 1 11.1850 -3.7212 3.9004 19 1 11.9246 -1.4478 3.4940 20 1 9.6769 -1.8654 4.3029 21 6 6.3987 -4.4809 -0.0004 22 6 6.2293 -4.9620 -1.4429 23 6 4.8152 -5.3147 -1.9085 24 6 5.8375 -6.4252 -1.6582 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.9970 -1.8763 -0.8908 29 1 1.9971 -1.8771 0.8892 30 1 5.2064 -0.0241 1.2478 31 1 3.5898 0.7203 1.2487 32 1 3.8717 -0.7954 2.1382 33 1 3.8703 -0.7943 -2.1402 34 1 3.5889 0.7210 -1.2498 35 1 5.2056 -0.0243 -1.2508 36 1 4.2660 -2.9223 -0.8909 37 1 4.2665 -2.9221 0.8891 38 1 8.8472 -3.6410 -0.5142 39 1 8.5219 -1.8911 -0.5152 40 1 11.9318 -2.1603 0.8486 41 1 7.1164 -5.1201 0.5139 42 1 5.4383 -4.5267 0.5130 43 1 6.9010 -4.5083 -2.1716 44 1 4.0056 -5.2044 -1.1871 45 1 4.5563 -5.0931 -2.9439 46 1 6.2512 -6.9341 -2.5289 47 1 5.7008 -7.0453 -0.7722 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191826204.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:46 Heat of formation + Delta-G solvation = -55.266890 kcal Electronic energy + Delta-G solvation = -25149.850081 eV Core-core repulsion = 21719.674611 eV Total energy + Delta-G solvation = -3430.175470 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.29414 -39.12163 -37.31691 -35.71862 -34.21501 -32.50784 -31.08290 -28.86096 -27.33797 -27.12423 -26.78126 -25.70171 -22.78009 -22.30324 -20.71362 -20.29286 -18.86585 -18.02006 -16.54724 -16.43107 -16.00110 -15.45887 -15.20733 -15.07976 -14.91226 -14.56293 -14.13871 -14.08661 -13.54241 -13.39700 -13.07246 -12.64283 -12.48959 -12.31391 -12.25523 -11.91901 -11.75020 -11.55420 -11.44412 -11.19716 -10.96605 -10.91690 -10.78990 -10.73850 -10.64411 -10.56095 -10.38056 -10.28097 -10.02790 -9.79466 -9.55317 -9.32204 -8.49109 -8.40293 -7.58576 -6.01098 -4.05452 1.93580 3.31699 3.38627 3.42376 3.52316 3.79145 3.94050 4.15280 4.47834 4.76997 4.87453 4.94178 4.97881 5.03885 5.10187 5.17280 5.20019 5.32690 5.35050 5.48984 5.56134 5.58452 5.60586 5.67230 5.74763 5.82655 5.86076 5.88428 5.97697 6.05865 6.11621 6.17247 6.38660 6.42440 6.44332 6.46955 6.66074 6.96663 7.02950 7.13149 7.50234 7.57519 7.64516 7.96095 8.27822 8.50918 8.95238 9.21387 9.59806 11.06897 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.004745 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.049300 B = 5900.094254 C = 7401.052635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.350 3.650 3 O -0.442 6.442 4 C -0.164 4.164 5 C -0.033 4.033 6 C -0.164 4.164 7 C -0.162 4.162 8 C -0.134 4.134 9 C 0.509 3.491 10 O -0.529 6.529 11 N -0.597 5.597 12 C 0.247 3.753 13 C -0.524 4.524 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.281 1.281 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.143 3.857 22 C -0.164 4.164 23 C -0.185 4.185 24 C -0.177 4.177 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.030 0.970 39 H 0.043 0.957 40 H 0.262 0.738 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.307 -5.165 -3.753 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.226 3.774 3 O -0.315 6.315 4 C -0.202 4.202 5 C -0.033 4.033 6 C -0.220 4.220 7 C -0.218 4.218 8 C -0.174 4.174 9 C 0.297 3.703 10 O -0.407 6.407 11 N -0.328 5.328 12 C 0.127 3.873 13 C -0.563 4.563 14 H 0.074 0.926 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.199 1.199 21 C 0.018 3.982 22 C -0.183 4.183 23 C -0.222 4.222 24 C -0.215 4.215 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.125 0.875 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.541 -3.955 -3.786 20.294 hybrid contribution 0.298 -0.392 0.919 1.043 sum -19.243 -4.347 -2.866 19.935 Atomic orbital electron populations 1.22285 0.95123 1.04287 1.04462 1.24555 0.91425 0.90713 0.70738 1.90347 1.71134 1.35418 1.34638 1.22281 0.96710 0.97188 1.03999 1.20053 0.90822 0.94322 0.98106 1.22296 1.05475 0.99892 0.94379 1.22271 1.05247 0.99932 0.94377 1.21842 0.94000 0.98458 1.03117 1.20240 0.87762 0.85324 0.76981 1.90546 1.79857 1.20794 1.49517 1.48211 1.09030 1.04152 1.71397 1.19244 0.73033 0.97661 0.97321 1.21435 0.93511 1.48966 0.92361 0.92553 1.24924 0.96716 0.95155 0.97277 1.69937 1.03852 1.48970 1.30651 0.86528 0.78445 0.77784 0.84849 1.20707 1.21121 1.19917 1.20986 0.99729 0.84543 0.92901 1.22946 0.97983 0.97714 0.99662 1.23036 0.92939 1.04252 1.01984 1.22895 1.03833 0.91589 1.03167 0.90262 0.89348 0.89363 0.88709 0.88701 0.89143 0.91483 0.94570 0.94634 0.91441 0.89386 0.89535 0.90031 0.95201 0.93919 0.92790 0.89679 0.91538 0.87462 0.88929 0.89246 0.89059 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.37 10.33 36.00 0.37 -1.00 16 2 C 0.35 3.72 6.68 -29.04 -0.19 3.52 16 3 O -0.44 -6.47 12.10 6.00 0.07 -6.40 16 4 C -0.16 -1.64 4.62 -27.89 -0.13 -1.77 16 5 C -0.03 -0.47 0.51 -154.50 -0.08 -0.55 16 6 C -0.16 -2.75 7.88 37.16 0.29 -2.45 16 7 C -0.16 -2.59 7.88 37.16 0.29 -2.30 16 8 C -0.13 -1.95 3.32 -27.88 -0.09 -2.05 16 9 C 0.51 10.31 7.09 -10.98 -0.08 10.23 16 10 O -0.53 -12.81 10.93 5.56 0.06 -12.75 16 11 N -0.60 -12.37 2.46 -175.06 -0.43 -12.80 16 12 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 13 C -0.52 -14.84 9.39 -34.44 -0.32 -15.17 16 14 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 17 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 20 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.14 2.28 5.49 -4.04 -0.02 2.26 16 22 C -0.16 -2.24 5.95 -90.62 -0.54 -2.78 16 23 C -0.19 -1.96 9.18 -26.73 -0.25 -2.20 16 24 C -0.18 -1.94 10.25 -26.73 -0.27 -2.21 16 25 H 0.08 0.36 8.00 -51.93 -0.42 -0.06 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 1.87 5.51 -51.93 -0.29 1.59 16 31 H 0.07 1.13 5.52 -51.93 -0.29 0.85 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 1.11 5.52 -51.93 -0.29 0.82 16 35 H 0.09 1.73 5.51 -51.93 -0.29 1.44 16 36 H 0.09 1.09 6.85 -51.93 -0.36 0.73 16 37 H 0.08 1.06 7.40 -51.93 -0.38 0.68 16 38 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 39 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 42 H 0.07 0.89 6.17 -51.93 -0.32 0.57 16 43 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 44 H 0.09 0.86 7.87 -51.93 -0.41 0.45 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 47 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 368.28 15.07 5.55 5.55 Total: -1.00 -33.36 368.28 -8.20 -41.56 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -8.03 Total: 2.26 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -1.14 Total: -8.42 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.31 Total: -38.83 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.13 Total: -19.15 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.36 -8.20 -41.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191826204.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.704 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds