Wall clock time and date at job start Tue Mar 31 2020 07:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20758 * 119.99907 * 2 1 4 4 C 1.50699 * 119.99785 * 180.02562 * 2 1 3 5 5 C 1.52996 * 109.47232 * 179.97438 * 4 2 1 6 6 C 1.53008 * 109.46896 * 60.00253 * 5 4 2 7 7 C 1.53005 * 109.47571 * 300.00448 * 5 4 2 8 8 C 1.53002 * 109.47340 * 179.97438 * 5 4 2 9 9 C 1.50706 * 109.46925 * 180.02562 * 8 5 4 10 10 O 1.21279 * 120.00072 * 0.02562 * 9 8 5 11 11 N 1.34777 * 119.99762 * 179.97438 * 9 8 5 12 12 C 1.46496 * 120.00258 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.46871 * 90.00155 * 12 11 9 14 14 H 1.07998 * 120.00222 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00011 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99586 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99962 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46972 * 90.00295 * 17 15 13 19 19 H 1.48503 * 109.47158 * 209.99536 * 17 15 13 20 20 H 1.48497 * 109.47137 * 329.99960 * 17 15 13 21 21 C 1.46504 * 119.99858 * 0.02562 * 11 9 8 22 22 C 1.52999 * 109.47507 * 89.99839 * 21 11 9 23 23 C 1.53003 * 117.49748 * 243.62506 * 22 21 11 24 24 C 1.52992 * 117.50002 * 174.99956 * 22 21 11 25 25 H 1.08998 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46875 * 299.99242 * 1 2 3 27 27 H 1.09000 * 109.47392 * 59.99523 * 1 2 3 28 28 H 1.09004 * 109.47103 * 59.99841 * 4 2 1 29 29 H 1.09000 * 109.47247 * 299.99719 * 4 2 1 30 30 H 1.09002 * 109.47288 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.46630 * 299.99857 * 6 5 4 32 32 H 1.09000 * 109.47188 * 60.00007 * 6 5 4 33 33 H 1.08996 * 109.46524 * 299.99684 * 7 5 4 34 34 H 1.09001 * 109.46962 * 59.99521 * 7 5 4 35 35 H 1.08992 * 109.47199 * 180.02562 * 7 5 4 36 36 H 1.09000 * 109.46497 * 60.00561 * 8 5 4 37 37 H 1.09000 * 109.47312 * 300.00340 * 8 5 4 38 38 H 1.09000 * 109.47710 * 210.00590 * 12 11 9 39 39 H 1.09000 * 109.46883 * 330.00634 * 12 11 9 40 40 H 0.97008 * 119.99716 * 180.02562 * 16 15 13 41 41 H 1.09005 * 109.47121 * 209.99861 * 21 11 9 42 42 H 1.08997 * 109.47160 * 329.99513 * 21 11 9 43 43 H 1.09002 * 115.54589 * 29.32423 * 22 21 11 44 44 H 1.08995 * 117.49876 * 359.97438 * 23 22 21 45 45 H 1.09002 * 117.49846 * 145.02378 * 23 22 21 46 46 H 1.09007 * 117.49671 * 214.97834 * 24 22 21 47 47 H 1.09002 * 117.50190 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2604 -1.3051 -0.0006 5 6 3.7646 -1.0256 -0.0011 6 6 4.1348 -0.2236 1.2483 7 6 4.1339 -0.2230 -1.2503 8 6 4.5296 -2.3507 -0.0011 9 6 6.0113 -2.0753 -0.0009 10 8 6.4156 -0.9318 -0.0004 11 7 6.8871 -3.0997 -0.0003 12 6 8.3274 -2.8321 -0.0008 13 6 8.8215 -2.7394 1.4199 14 1 8.1317 -2.8674 2.2410 15 6 10.1542 -2.4911 1.6715 16 7 10.9941 -2.3347 0.6716 17 14 10.7665 -2.3754 3.4325 18 1 11.1850 -3.7212 3.9004 19 1 11.9246 -1.4478 3.4940 20 1 9.6769 -1.8654 4.3029 21 6 6.3987 -4.4809 -0.0004 22 6 6.2293 -4.9620 -1.4429 23 6 4.8152 -5.3147 -1.9085 24 6 5.8375 -6.4252 -1.6582 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.9970 -1.8763 -0.8908 29 1 1.9971 -1.8771 0.8892 30 1 5.2064 -0.0241 1.2478 31 1 3.5898 0.7203 1.2487 32 1 3.8717 -0.7954 2.1382 33 1 3.8703 -0.7943 -2.1402 34 1 3.5889 0.7210 -1.2498 35 1 5.2056 -0.0243 -1.2508 36 1 4.2660 -2.9223 -0.8909 37 1 4.2665 -2.9221 0.8891 38 1 8.8472 -3.6410 -0.5142 39 1 8.5219 -1.8911 -0.5152 40 1 11.9318 -2.1603 0.8486 41 1 7.1164 -5.1201 0.5139 42 1 5.4383 -4.5267 0.5130 43 1 6.9010 -4.5083 -2.1716 44 1 4.0056 -5.2044 -1.1871 45 1 4.5563 -5.0931 -2.9439 46 1 6.2512 -6.9341 -2.5289 47 1 5.7008 -7.0453 -0.7722 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191826204.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:46 Heat of formation + Delta-G solvation = -75.231094 kcal Electronic energy + Delta-G solvation = -25150.715794 eV Core-core repulsion = 21719.674611 eV Total energy + Delta-G solvation = -3431.041183 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.46197 -40.36891 -38.43163 -36.98250 -35.84612 -34.57598 -31.80378 -30.52061 -28.76799 -28.10050 -28.00551 -27.31274 -24.74903 -23.12574 -21.86793 -21.35373 -19.96911 -19.36976 -18.59485 -17.94902 -17.14965 -16.75011 -16.43298 -16.26259 -16.06276 -15.95818 -15.51378 -15.16272 -14.77974 -14.67206 -14.36888 -14.15087 -13.80717 -13.49668 -13.30946 -13.22070 -12.93015 -12.80916 -12.75778 -12.61000 -12.56438 -12.24280 -12.20416 -12.16993 -12.06981 -11.91229 -11.84149 -11.67812 -11.49425 -11.19624 -10.79620 -10.64533 -10.35998 -9.94394 -9.32996 -8.22107 -6.37112 1.18849 1.33997 1.37601 1.47690 1.97314 2.31193 2.47309 3.01812 3.06875 3.29596 3.67567 3.92873 3.98302 4.04360 4.09608 4.12286 4.25196 4.37311 4.42116 4.54146 4.61374 4.70474 4.76415 4.81002 4.85980 4.88136 4.89065 4.90942 4.93405 5.03681 5.04975 5.12290 5.18730 5.20931 5.22005 5.26941 5.37359 5.38537 5.50602 5.57400 5.61806 5.71696 5.92916 6.08447 6.71813 6.82947 6.91193 7.30216 7.64952 8.84612 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.004745 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.049300 B = 5900.094254 C = 7401.052635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.348 3.652 3 O -0.496 6.496 4 C -0.159 4.159 5 C -0.033 4.033 6 C -0.159 4.159 7 C -0.156 4.156 8 C -0.118 4.118 9 C 0.495 3.505 10 O -0.581 6.581 11 N -0.604 5.604 12 C 0.266 3.734 13 C -0.539 4.539 14 H 0.053 0.947 15 C 0.006 3.994 16 N -0.930 5.930 17 Si 0.967 3.033 18 H -0.261 1.261 19 H -0.282 1.282 20 H -0.273 1.273 21 C 0.143 3.857 22 C -0.196 4.196 23 C -0.159 4.159 24 C -0.165 4.165 25 H 0.111 0.889 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.040 0.960 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.040 0.960 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.015 0.985 39 H -0.008 1.008 40 H 0.266 0.734 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.074 0.926 44 H 0.120 0.880 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.221 -7.985 -2.868 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.227 3.773 3 O -0.373 6.373 4 C -0.196 4.196 5 C -0.033 4.033 6 C -0.216 4.216 7 C -0.213 4.213 8 C -0.157 4.157 9 C 0.285 3.715 10 O -0.462 6.462 11 N -0.334 5.334 12 C 0.144 3.856 13 C -0.577 4.577 14 H 0.071 0.929 15 C -0.193 4.193 16 N -0.570 5.570 17 Si 0.791 3.209 18 H -0.186 1.186 19 H -0.208 1.208 20 H -0.198 1.198 21 C 0.021 3.979 22 C -0.216 4.216 23 C -0.196 4.196 24 C -0.203 4.203 25 H 0.130 0.870 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.033 0.967 39 H 0.010 0.990 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.122 0.878 43 H 0.092 0.908 44 H 0.139 0.861 45 H 0.117 0.883 46 H 0.114 0.886 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -23.501 -6.834 -2.910 24.647 hybrid contribution 1.542 0.513 0.580 1.725 sum -21.959 -6.321 -2.330 22.970 Atomic orbital electron populations 1.22276 0.91718 1.06603 1.04814 1.25213 0.93367 0.90120 0.68587 1.90357 1.72472 1.37137 1.37368 1.22330 0.92267 0.97725 1.07274 1.20055 0.94461 0.93318 0.95468 1.22193 1.01995 1.00659 0.96750 1.22159 1.01930 1.00599 0.96613 1.21855 0.88702 0.99282 1.05901 1.21427 0.90273 0.84270 0.75551 1.90559 1.81203 1.23016 1.51390 1.48214 1.06867 1.06825 1.71532 1.18599 0.76892 0.94473 0.95644 1.21716 0.93904 1.49021 0.93098 0.92875 1.25870 0.96937 0.94549 1.01895 1.70067 1.04254 1.49662 1.33040 0.85430 0.77670 0.78615 0.79189 1.18619 1.20774 1.19796 1.21204 1.00619 0.81266 0.94858 1.22645 1.00881 1.00552 0.97493 1.23205 0.91470 1.01755 1.03139 1.23008 1.03103 0.90216 1.03931 0.86987 0.88996 0.88866 0.85106 0.85418 0.94099 0.92165 0.92929 0.92510 0.92222 0.94099 0.86350 0.86973 0.96725 0.99010 0.92519 0.91458 0.87807 0.90780 0.86149 0.88294 0.88607 0.87303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.83 10.33 71.24 0.74 -1.09 16 2 C 0.35 6.36 6.68 29.10 0.19 6.55 16 3 O -0.50 -14.34 12.10 -1.44 -0.02 -14.36 16 4 C -0.16 -2.41 4.62 29.85 0.14 -2.27 16 5 C -0.03 -0.88 0.51 -52.18 -0.03 -0.91 16 6 C -0.16 -5.40 7.88 71.98 0.57 -4.84 16 7 C -0.16 -5.08 7.88 71.98 0.57 -4.51 16 8 C -0.12 -3.11 3.32 29.85 0.10 -3.01 16 9 C 0.49 20.56 7.09 87.66 0.62 21.18 16 10 O -0.58 -30.33 10.93 -3.03 -0.03 -30.37 16 11 N -0.60 -25.92 2.46 -826.14 -2.03 -27.95 16 12 C 0.27 14.82 5.16 85.63 0.44 15.27 16 13 C -0.54 -31.91 9.39 25.60 0.24 -31.67 16 14 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 15 C 0.01 0.36 5.46 84.66 0.46 0.82 16 16 N -0.93 -58.03 13.29 21.45 0.28 -57.74 16 17 Si 0.97 46.15 29.54 68.60 2.03 48.17 16 18 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 20 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 21 C 0.14 4.43 5.49 86.38 0.47 4.90 16 22 C -0.20 -5.13 5.95 -10.80 -0.06 -5.19 16 23 C -0.16 -2.65 9.18 30.60 0.28 -2.37 16 24 C -0.17 -3.09 10.25 30.59 0.31 -2.78 16 25 H 0.11 0.32 8.00 -2.39 -0.02 0.30 16 26 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 27 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.13 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.04 1.80 5.51 -2.39 -0.01 1.79 16 31 H 0.06 2.11 5.52 -2.39 -0.01 2.10 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 2.02 5.52 -2.39 -0.01 2.01 16 35 H 0.04 1.72 5.51 -2.39 -0.01 1.71 16 36 H 0.12 2.40 6.85 -2.39 -0.02 2.39 16 37 H 0.11 2.34 7.40 -2.39 -0.02 2.32 16 38 H 0.01 0.84 8.07 -2.39 -0.02 0.83 16 39 H -0.01 -0.53 7.42 -2.39 -0.02 -0.55 16 40 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 41 H 0.07 2.28 8.07 -2.38 -0.02 2.26 16 42 H 0.10 2.38 6.17 -2.39 -0.01 2.36 16 43 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.12 1.39 7.87 -2.39 -0.02 1.37 16 45 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.10 1.71 8.14 -2.38 -0.02 1.70 16 47 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -82.97 368.28 6.21 -76.76 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.94 Total: 15.41 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 5.04 Total: -9.92 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -1.74 Total: -85.69 kcal Atomic # 8 Polarization: -44.68 SS G_CDS: -0.05 Total: -44.73 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -82.97 6.21 -76.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191826204.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.524 kcal (2) G-P(sol) polarization free energy of solvation -82.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds