Wall clock time and date at job start Tue Mar 31 2020 07:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52837 * 1 3 3 H 1.11137 * 106.60480 * 2 1 4 4 C 1.52207 * 110.62953 * 115.97313 * 2 1 3 5 5 C 1.52773 * 110.73495 * 74.46780 * 4 2 1 6 6 H 1.08686 * 110.34992 * 299.51229 * 5 4 2 7 7 C 1.51059 * 109.10086 * 179.97438 * 5 4 2 8 8 O 1.21278 * 119.99704 * 241.13848 * 7 5 4 9 9 N 1.34773 * 119.99534 * 61.14387 * 7 5 4 10 10 C 1.47070 * 136.05270 * 179.97438 * 9 7 5 11 11 C 1.53500 * 87.98636 * 152.84494 * 10 9 7 12 12 O 1.42898 * 114.20473 * 272.48458 * 11 10 9 13 13 C 1.50691 * 114.20738 * 139.65586 * 11 10 9 14 14 H 1.07997 * 120.00307 * 5.47705 * 13 11 10 15 15 C 1.37877 * 119.99972 * 185.47992 * 13 11 10 16 16 N 1.31520 * 120.00027 * 10.18843 * 15 13 11 17 17 Si 1.86805 * 120.00223 * 190.19379 * 15 13 11 18 18 H 1.48493 * 109.47083 * 84.99334 * 17 15 13 19 19 H 1.48495 * 109.47037 * 204.99631 * 17 15 13 20 20 H 1.48506 * 109.46770 * 324.99431 * 17 15 13 21 21 C 1.47063 * 136.06457 * 359.94751 * 9 7 5 22 22 C 1.52705 * 108.88159 * 60.95988 * 5 4 2 23 23 C 1.52475 * 110.82305 * 298.36631 * 22 5 4 24 24 C 1.54409 * 107.71889 * 171.51936 * 23 22 5 25 25 C 1.53119 * 110.03022 * 288.31707 * 23 22 5 26 26 C 1.51529 * 111.70564 * 242.97397 * 2 1 3 27 27 H 1.08990 * 109.47031 * 177.02634 * 1 2 3 28 28 H 1.09004 * 109.46788 * 297.02772 * 1 2 3 29 29 H 1.09000 * 109.46734 * 57.02191 * 1 2 3 30 30 H 1.09339 * 109.56105 * 313.98262 * 4 2 1 31 31 H 1.09319 * 109.58102 * 195.01237 * 4 2 1 32 32 H 1.08999 * 113.47013 * 267.62573 * 10 9 7 33 33 H 1.09000 * 113.47039 * 38.06545 * 10 9 7 34 34 H 0.96693 * 114.00033 * 184.01326 * 12 11 10 35 35 H 0.96997 * 120.00083 * 179.97438 * 16 15 13 36 36 H 1.09010 * 113.46309 * 321.93676 * 21 9 7 37 37 H 1.08995 * 113.46821 * 92.31572 * 21 9 7 38 38 H 1.09302 * 109.28849 * 59.03162 * 22 5 4 39 39 H 1.09303 * 109.26838 * 177.73071 * 22 5 4 40 40 H 1.09001 * 109.47129 * 59.99770 * 24 23 22 41 41 H 1.09002 * 109.47366 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.47512 * 299.99956 * 24 23 22 43 43 H 1.08992 * 109.47601 * 59.99826 * 25 23 22 44 44 H 1.09005 * 109.46938 * 180.02562 * 25 23 22 45 45 H 1.08997 * 109.46681 * 299.99818 * 25 23 22 46 46 H 1.10226 * 108.73244 * 155.37102 * 26 2 1 47 47 H 1.10212 * 108.80276 * 40.30687 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5284 0.0000 0.0000 3 1 1.8460 1.0650 0.0000 4 6 2.0646 -0.6238 1.2806 5 6 1.8971 -2.1421 1.2540 6 1 0.8461 -2.4050 1.1671 7 6 2.4405 -2.7220 2.5387 8 8 3.3659 -3.5052 2.5067 9 7 1.8968 -2.3690 3.7202 10 6 2.1309 -2.6986 5.1342 11 6 1.5558 -1.3218 5.4944 12 8 2.5202 -0.2673 5.5004 13 6 0.6627 -1.3235 6.7082 14 1 0.5478 -2.2242 7.2928 15 6 -0.0078 -0.1751 7.0723 16 7 -0.0314 0.8585 6.2593 17 14 -0.8828 -0.0870 8.7204 18 1 0.0844 0.3139 9.7734 19 1 -1.9775 0.9136 8.6468 20 1 -1.4507 -1.4188 9.0510 21 6 0.8087 -1.4843 4.1632 22 6 2.6887 -2.7060 0.0761 23 6 2.1607 -2.1565 -1.2445 24 6 3.1350 -2.5951 -2.3592 25 6 0.7953 -2.7731 -1.5607 26 6 2.0888 -0.6397 -1.2541 27 1 -0.3633 -1.0262 -0.0533 28 1 -0.3633 0.4670 0.9155 29 1 -0.3633 0.5594 -0.8621 30 1 1.5240 -0.2178 2.1399 31 1 3.1247 -0.3807 1.3906 32 1 1.5237 -3.5299 5.4925 33 1 3.1859 -2.8076 5.3857 34 1 2.1678 0.5863 5.7869 35 1 -0.5034 1.6663 6.5153 36 1 0.7393 -0.5605 3.5886 37 1 -0.1507 -1.9921 4.2619 38 1 3.7421 -2.4364 0.1868 39 1 2.6062 -3.7960 0.0749 40 1 3.1818 -3.6836 -2.3933 41 1 2.7833 -2.2166 -3.3189 42 1 4.1277 -2.1952 -2.1522 43 1 0.0927 -2.5282 -0.7643 44 1 0.4268 -2.3746 -2.5061 45 1 0.8946 -3.8558 -1.6373 46 1 3.1013 -0.2422 -1.4321 47 1 1.4810 -0.3222 -2.1169 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193139991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:46 Heat of formation + Delta-G solvation = -79.710420 kcal Electronic energy + Delta-G solvation = -25711.593415 eV Core-core repulsion = 22280.357994 eV Total energy + Delta-G solvation = -3431.235421 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24884 -38.90720 -37.15430 -34.22011 -33.89417 -32.30898 -31.87917 -28.57763 -27.60731 -26.58408 -26.10864 -25.46419 -24.99070 -22.92124 -20.52434 -19.99794 -18.17776 -17.88030 -17.35906 -16.20431 -15.76283 -15.14868 -14.84201 -14.52252 -14.35420 -14.20298 -14.11410 -14.01876 -13.43588 -13.09674 -13.01375 -12.65330 -12.31922 -12.25648 -12.16243 -11.92467 -11.79187 -11.66914 -11.55467 -11.18858 -11.08103 -11.05426 -10.89005 -10.84147 -10.61827 -10.53564 -10.35821 -10.23816 -9.96214 -9.74444 -9.41636 -9.01995 -8.85563 -8.31816 -7.79565 -6.40792 -4.49598 3.14962 3.22902 3.24580 3.29924 3.63156 4.18620 4.62689 4.67054 4.72243 4.82785 5.08626 5.13776 5.19289 5.24406 5.35730 5.46805 5.51134 5.58207 5.61341 5.66362 5.72157 5.77892 5.84639 5.87053 5.94816 5.98949 6.06610 6.12205 6.12821 6.18188 6.18979 6.26362 6.35205 6.37860 6.46105 6.49546 6.56196 6.57976 6.61728 6.73234 6.87545 7.09193 7.60544 7.78584 8.53024 8.60686 8.85875 9.21257 9.25360 10.65316 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.024133 B = 0.004222 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.943011 B = 6630.042932 C = 7232.089676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.082 4.082 3 H 0.062 0.938 4 C -0.108 4.108 5 C -0.091 4.091 6 H 0.090 0.910 7 C 0.536 3.464 8 O -0.568 6.568 9 N -0.635 5.635 10 C 0.106 3.894 11 C 0.239 3.761 12 O -0.565 6.565 13 C -0.541 4.541 14 H 0.072 0.928 15 C 0.075 3.925 16 N -0.889 5.889 17 Si 0.902 3.098 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.079 3.921 22 C -0.084 4.084 23 C -0.058 4.058 24 C -0.144 4.144 25 C -0.144 4.144 26 C -0.097 4.097 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.386 0.614 35 H 0.271 0.729 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.741 -1.092 -13.509 13.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.101 4.101 3 H 0.081 0.919 4 C -0.146 4.146 5 C -0.112 4.112 6 H 0.109 0.891 7 C 0.326 3.674 8 O -0.448 6.448 9 N -0.368 5.368 10 C -0.017 4.017 11 C 0.197 3.803 12 O -0.374 6.374 13 C -0.579 4.579 14 H 0.090 0.910 15 C -0.129 4.129 16 N -0.527 5.527 17 Si 0.729 3.271 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.196 1.196 21 C -0.044 4.044 22 C -0.122 4.122 23 C -0.058 4.058 24 C -0.201 4.201 25 C -0.201 4.201 26 C -0.135 4.135 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.237 0.763 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.171 -1.833 -13.976 14.096 hybrid contribution -0.991 0.570 1.011 1.526 sum -0.820 -1.263 -12.964 13.052 Atomic orbital electron populations 1.21960 0.95179 1.01965 1.01656 1.20747 0.95761 0.99402 0.94142 0.91939 1.21500 1.02089 0.92955 0.98033 1.21056 1.01012 0.96805 0.92363 0.89147 1.20272 0.82750 0.80744 0.83673 1.90611 1.30289 1.37003 1.86930 1.49772 1.35680 1.46038 1.05285 1.23286 1.00971 0.99072 0.78349 1.19521 0.85657 0.83984 0.91088 1.86093 1.38850 1.22190 1.90257 1.21355 1.27177 0.98094 1.11235 0.91018 1.25061 0.95103 0.95455 0.97314 1.69760 1.42791 1.04943 1.35200 0.86440 0.79019 0.78177 0.83458 1.20150 1.21061 1.19638 1.24172 0.90714 0.92091 0.97431 1.21258 0.99496 1.00162 0.91294 1.20387 0.95504 0.94824 0.95062 1.22259 0.98930 1.01126 0.97792 1.22051 0.96564 1.00270 1.01220 1.21266 1.01032 0.93975 0.97190 0.92365 0.92241 0.93083 0.90117 0.91851 0.89826 0.91789 0.76325 0.91900 0.91133 0.90364 0.91442 0.91606 0.92733 0.92982 0.92775 0.92104 0.92930 0.92850 0.92588 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.91 37.07 0.33 -1.41 16 2 C -0.08 -1.01 2.60 -91.85 -0.24 -1.25 16 3 H 0.06 0.75 8.29 -50.70 -0.42 0.33 16 4 C -0.11 -1.65 4.49 -27.25 -0.12 -1.78 16 5 C -0.09 -1.46 2.22 -91.86 -0.20 -1.66 16 6 H 0.09 1.37 6.32 -52.11 -0.33 1.04 16 7 C 0.54 11.01 7.38 -10.81 -0.08 10.93 16 8 O -0.57 -13.28 16.70 5.56 0.09 -13.18 16 9 N -0.63 -13.48 3.64 -185.05 -0.67 -14.15 16 10 C 0.11 2.33 8.03 -8.51 -0.07 2.26 16 11 C 0.24 5.63 1.41 -91.25 -0.13 5.50 16 12 O -0.57 -14.05 13.57 -35.23 -0.48 -14.52 16 13 C -0.54 -13.31 8.65 -34.44 -0.30 -13.61 16 14 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 15 C 0.07 1.81 5.21 -17.82 -0.09 1.72 16 16 N -0.89 -21.88 11.81 55.43 0.65 -21.23 16 17 Si 0.90 19.11 29.55 -169.99 -5.02 14.09 16 18 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 C 0.08 1.67 7.45 -8.50 -0.06 1.61 16 22 C -0.08 -1.21 3.09 -27.15 -0.08 -1.29 16 23 C -0.06 -0.65 0.71 -154.56 -0.11 -0.76 16 24 C -0.14 -1.44 8.08 37.90 0.31 -1.14 16 25 C -0.14 -1.50 8.00 37.22 0.30 -1.20 16 26 C -0.10 -1.07 4.12 -28.06 -0.12 -1.19 16 27 H 0.06 0.66 4.92 -51.93 -0.26 0.41 16 28 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 1.38 5.15 -51.74 -0.27 1.12 16 31 H 0.06 1.04 8.17 -51.75 -0.42 0.61 16 32 H 0.08 1.70 8.10 -51.93 -0.42 1.28 16 33 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.39 9.54 7.09 45.56 0.32 9.87 16 35 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 36 H 0.07 1.50 5.76 -51.92 -0.30 1.20 16 37 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16 38 H 0.07 1.06 8.05 -51.76 -0.42 0.64 16 39 H 0.07 0.99 8.04 -51.76 -0.42 0.58 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.55 8.08 -51.93 -0.42 0.13 16 43 H 0.06 0.66 4.62 -51.93 -0.24 0.42 16 44 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.61 7.94 -51.23 -0.41 0.20 16 47 H 0.06 0.57 7.94 -51.24 -0.41 0.16 16 LS Contribution 356.52 15.07 5.37 5.37 Total: -1.00 -26.98 356.52 -8.04 -35.02 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -7.32 Total: 11.89 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.67 Total: -3.28 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.02 Total: -35.38 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.39 Total: -27.71 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -26.98 -8.04 -35.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193139991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.692 kcal (2) G-P(sol) polarization free energy of solvation -26.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds