Wall clock time and date at job start Tue Mar 31 2020 07:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52837 * 1 3 3 H 1.11137 * 106.60480 * 2 1 4 4 C 1.52207 * 110.62953 * 115.97313 * 2 1 3 5 5 C 1.52773 * 110.73495 * 74.46780 * 4 2 1 6 6 H 1.08686 * 110.34992 * 299.51229 * 5 4 2 7 7 C 1.51059 * 109.10086 * 179.97438 * 5 4 2 8 8 O 1.21278 * 119.99704 * 241.13848 * 7 5 4 9 9 N 1.34773 * 119.99534 * 61.14387 * 7 5 4 10 10 C 1.47070 * 136.05270 * 179.97438 * 9 7 5 11 11 C 1.53500 * 87.98636 * 152.84494 * 10 9 7 12 12 O 1.42898 * 114.20473 * 272.48458 * 11 10 9 13 13 C 1.50691 * 114.20738 * 139.65586 * 11 10 9 14 14 H 1.07997 * 120.00307 * 5.47705 * 13 11 10 15 15 C 1.37877 * 119.99972 * 185.47992 * 13 11 10 16 16 N 1.31520 * 120.00027 * 10.18843 * 15 13 11 17 17 Si 1.86805 * 120.00223 * 190.19379 * 15 13 11 18 18 H 1.48493 * 109.47083 * 84.99334 * 17 15 13 19 19 H 1.48495 * 109.47037 * 204.99631 * 17 15 13 20 20 H 1.48506 * 109.46770 * 324.99431 * 17 15 13 21 21 C 1.47063 * 136.06457 * 359.94751 * 9 7 5 22 22 C 1.52705 * 108.88159 * 60.95988 * 5 4 2 23 23 C 1.52475 * 110.82305 * 298.36631 * 22 5 4 24 24 C 1.54409 * 107.71889 * 171.51936 * 23 22 5 25 25 C 1.53119 * 110.03022 * 288.31707 * 23 22 5 26 26 C 1.51529 * 111.70564 * 242.97397 * 2 1 3 27 27 H 1.08990 * 109.47031 * 177.02634 * 1 2 3 28 28 H 1.09004 * 109.46788 * 297.02772 * 1 2 3 29 29 H 1.09000 * 109.46734 * 57.02191 * 1 2 3 30 30 H 1.09339 * 109.56105 * 313.98262 * 4 2 1 31 31 H 1.09319 * 109.58102 * 195.01237 * 4 2 1 32 32 H 1.08999 * 113.47013 * 267.62573 * 10 9 7 33 33 H 1.09000 * 113.47039 * 38.06545 * 10 9 7 34 34 H 0.96693 * 114.00033 * 184.01326 * 12 11 10 35 35 H 0.96997 * 120.00083 * 179.97438 * 16 15 13 36 36 H 1.09010 * 113.46309 * 321.93676 * 21 9 7 37 37 H 1.08995 * 113.46821 * 92.31572 * 21 9 7 38 38 H 1.09302 * 109.28849 * 59.03162 * 22 5 4 39 39 H 1.09303 * 109.26838 * 177.73071 * 22 5 4 40 40 H 1.09001 * 109.47129 * 59.99770 * 24 23 22 41 41 H 1.09002 * 109.47366 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.47512 * 299.99956 * 24 23 22 43 43 H 1.08992 * 109.47601 * 59.99826 * 25 23 22 44 44 H 1.09005 * 109.46938 * 180.02562 * 25 23 22 45 45 H 1.08997 * 109.46681 * 299.99818 * 25 23 22 46 46 H 1.10226 * 108.73244 * 155.37102 * 26 2 1 47 47 H 1.10212 * 108.80276 * 40.30687 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5284 0.0000 0.0000 3 1 1.8460 1.0650 0.0000 4 6 2.0646 -0.6238 1.2806 5 6 1.8971 -2.1421 1.2540 6 1 0.8461 -2.4050 1.1671 7 6 2.4405 -2.7220 2.5387 8 8 3.3659 -3.5052 2.5067 9 7 1.8968 -2.3690 3.7202 10 6 2.1309 -2.6986 5.1342 11 6 1.5558 -1.3218 5.4944 12 8 2.5202 -0.2673 5.5004 13 6 0.6627 -1.3235 6.7082 14 1 0.5478 -2.2242 7.2928 15 6 -0.0078 -0.1751 7.0723 16 7 -0.0314 0.8585 6.2593 17 14 -0.8828 -0.0870 8.7204 18 1 0.0844 0.3139 9.7734 19 1 -1.9775 0.9136 8.6468 20 1 -1.4507 -1.4188 9.0510 21 6 0.8087 -1.4843 4.1632 22 6 2.6887 -2.7060 0.0761 23 6 2.1607 -2.1565 -1.2445 24 6 3.1350 -2.5951 -2.3592 25 6 0.7953 -2.7731 -1.5607 26 6 2.0888 -0.6397 -1.2541 27 1 -0.3633 -1.0262 -0.0533 28 1 -0.3633 0.4670 0.9155 29 1 -0.3633 0.5594 -0.8621 30 1 1.5240 -0.2178 2.1399 31 1 3.1247 -0.3807 1.3906 32 1 1.5237 -3.5299 5.4925 33 1 3.1859 -2.8076 5.3857 34 1 2.1678 0.5863 5.7869 35 1 -0.5034 1.6663 6.5153 36 1 0.7393 -0.5605 3.5886 37 1 -0.1507 -1.9921 4.2619 38 1 3.7421 -2.4364 0.1868 39 1 2.6062 -3.7960 0.0749 40 1 3.1818 -3.6836 -2.3933 41 1 2.7833 -2.2166 -3.3189 42 1 4.1277 -2.1952 -2.1522 43 1 0.0927 -2.5282 -0.7643 44 1 0.4268 -2.3746 -2.5061 45 1 0.8946 -3.8558 -1.6373 46 1 3.1013 -0.2422 -1.4321 47 1 1.4810 -0.3222 -2.1169 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193139991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:45 Heat of formation + Delta-G solvation = -95.471474 kcal Electronic energy + Delta-G solvation = -25712.276866 eV Core-core repulsion = 22280.357994 eV Total energy + Delta-G solvation = -3431.918871 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.71617 -40.32730 -38.81155 -35.92837 -35.07642 -34.21867 -33.13267 -30.31118 -28.44335 -27.50614 -27.35589 -27.13944 -26.65180 -24.29231 -21.83065 -21.42588 -19.88252 -19.27881 -18.85614 -17.77973 -17.38136 -16.84158 -16.34950 -16.02899 -15.88147 -15.33987 -15.24363 -15.16558 -14.81254 -14.51507 -14.36064 -14.03749 -13.87108 -13.77480 -13.58934 -13.23905 -12.95760 -12.82729 -12.74994 -12.62617 -12.54343 -12.25112 -12.23957 -12.14627 -11.95785 -11.90907 -11.64554 -11.46200 -11.14555 -11.03945 -10.86580 -10.75037 -10.59253 -10.13777 -9.57557 -8.26732 -6.41955 1.46824 1.51143 1.58097 1.63562 1.98649 2.41618 2.94921 3.37682 3.61704 3.66454 3.68578 3.98410 4.10376 4.11479 4.15304 4.22511 4.25820 4.40043 4.43029 4.48066 4.58524 4.63845 4.76367 4.77077 4.83286 4.86751 4.93392 4.95550 4.96395 5.02114 5.05725 5.11699 5.14810 5.16894 5.19724 5.24272 5.27962 5.42516 5.44054 5.53646 5.56604 5.66029 5.71244 5.90065 6.62576 6.90267 7.15580 7.30172 7.31489 8.78880 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.024133 B = 0.004222 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.943011 B = 6630.042932 C = 7232.089676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.078 4.078 3 H 0.068 0.932 4 C -0.102 4.102 5 C -0.080 4.080 6 H 0.103 0.897 7 C 0.526 3.474 8 O -0.600 6.600 9 N -0.637 5.637 10 C 0.103 3.897 11 C 0.223 3.777 12 O -0.577 6.577 13 C -0.561 4.561 14 H 0.071 0.929 15 C 0.040 3.960 16 N -0.904 5.904 17 Si 0.961 3.039 18 H -0.278 1.278 19 H -0.281 1.281 20 H -0.269 1.269 21 C 0.095 3.905 22 C -0.078 4.078 23 C -0.054 4.054 24 C -0.141 4.141 25 C -0.143 4.143 26 C -0.097 4.097 27 H 0.060 0.940 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.100 0.900 33 H 0.051 0.949 34 H 0.383 0.617 35 H 0.274 0.726 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.055 0.945 44 H 0.072 0.928 45 H 0.053 0.947 46 H 0.057 0.943 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.137 -0.752 -15.079 15.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.096 4.096 3 H 0.086 0.914 4 C -0.139 4.139 5 C -0.101 4.101 6 H 0.121 0.879 7 C 0.318 3.682 8 O -0.483 6.483 9 N -0.369 5.369 10 C -0.020 4.020 11 C 0.182 3.818 12 O -0.386 6.386 13 C -0.599 4.599 14 H 0.089 0.911 15 C -0.162 4.162 16 N -0.542 5.542 17 Si 0.787 3.213 18 H -0.204 1.204 19 H -0.207 1.207 20 H -0.193 1.193 21 C -0.028 4.028 22 C -0.116 4.116 23 C -0.054 4.054 24 C -0.198 4.198 25 C -0.200 4.200 26 C -0.134 4.134 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.069 0.931 34 H 0.234 0.766 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.230 -1.493 -15.555 15.675 hybrid contribution -0.497 0.455 1.537 1.679 sum -1.728 -1.038 -14.018 14.162 Atomic orbital electron populations 1.21943 0.94275 1.02364 1.01922 1.20727 0.96421 0.99462 0.92989 0.91382 1.21440 1.00825 0.92385 0.99287 1.21083 1.01576 0.97071 0.90377 0.87861 1.21203 0.82162 0.80175 0.84667 1.90585 1.31722 1.38513 1.87466 1.49849 1.35695 1.46042 1.05322 1.23322 1.00418 0.99018 0.79231 1.19729 0.85963 0.84093 0.92062 1.86082 1.39682 1.22416 1.90373 1.21535 1.27832 0.98529 1.11981 0.91128 1.25664 0.95604 0.95074 0.99860 1.69819 1.42988 1.05209 1.36231 0.85518 0.77914 0.78131 0.79759 1.20369 1.20674 1.19345 1.23949 0.90602 0.92096 0.96112 1.21244 0.98315 0.99612 0.92470 1.20368 0.96507 0.95143 0.93422 1.22232 0.98360 1.01192 0.98061 1.22048 0.95536 1.00384 1.02023 1.21263 1.01618 0.93437 0.97085 0.92118 0.93676 0.90929 0.92205 0.93615 0.88201 0.93086 0.76622 0.91630 0.91175 0.89683 0.93313 0.92572 0.92771 0.90991 0.93241 0.92650 0.90920 0.92813 0.92411 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.91 71.93 0.64 -2.44 16 2 C -0.08 -1.77 2.60 -11.59 -0.03 -1.80 16 3 H 0.07 1.50 8.29 -1.23 -0.01 1.49 16 4 C -0.10 -3.10 4.49 30.26 0.14 -2.97 16 5 C -0.08 -2.55 2.22 -11.60 -0.03 -2.58 16 6 H 0.10 3.04 6.32 -2.55 -0.02 3.03 16 7 C 0.53 22.00 7.38 87.77 0.65 22.65 16 8 O -0.60 -28.78 16.70 -3.02 -0.05 -28.83 16 9 N -0.64 -27.44 3.64 -858.24 -3.12 -30.57 16 10 C 0.10 4.61 8.03 83.18 0.67 5.28 16 11 C 0.22 10.62 1.41 -11.20 -0.02 10.60 16 12 O -0.58 -29.34 13.57 -148.98 -2.02 -31.36 16 13 C -0.56 -27.63 8.65 25.60 0.22 -27.41 16 14 H 0.07 3.41 7.83 -2.91 -0.02 3.39 16 15 C 0.04 1.94 5.21 84.65 0.44 2.38 16 16 N -0.90 -44.28 11.81 21.45 0.25 -44.02 16 17 Si 0.96 38.67 29.55 68.60 2.03 40.70 16 18 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 19 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 20 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 21 C 0.09 4.07 7.45 83.18 0.62 4.69 16 22 C -0.08 -2.22 3.09 30.32 0.09 -2.13 16 23 C -0.05 -1.11 0.71 -52.22 -0.04 -1.15 16 24 C -0.14 -2.50 8.08 72.46 0.59 -1.91 16 25 C -0.14 -2.55 8.00 72.02 0.58 -1.98 16 26 C -0.10 -1.86 4.12 29.73 0.12 -1.74 16 27 H 0.06 1.23 4.92 -2.39 -0.01 1.22 16 28 H 0.04 1.06 8.08 -2.39 -0.02 1.04 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 2.08 5.15 -2.21 -0.01 2.07 16 31 H 0.04 1.53 8.17 -2.22 -0.02 1.51 16 32 H 0.10 4.09 8.10 -2.39 -0.02 4.07 16 33 H 0.05 2.37 8.14 -2.39 -0.02 2.36 16 34 H 0.38 19.41 7.09 -74.06 -0.53 18.88 16 35 H 0.27 12.76 8.31 -92.71 -0.77 11.98 16 36 H 0.07 3.01 5.76 -2.38 -0.01 3.00 16 37 H 0.09 3.51 8.10 -2.39 -0.02 3.50 16 38 H 0.05 1.55 8.05 -2.23 -0.02 1.53 16 39 H 0.06 1.68 8.04 -2.23 -0.02 1.67 16 40 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.05 0.92 8.08 -2.39 -0.02 0.90 16 43 H 0.05 1.05 4.62 -2.39 -0.01 1.04 16 44 H 0.07 1.03 8.08 -2.38 -0.02 1.01 16 45 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.06 1.11 7.94 -1.73 -0.01 1.10 16 47 H 0.08 1.26 7.94 -1.74 -0.01 1.24 16 Total: -1.00 -57.51 356.52 2.18 -55.33 By element: Atomic # 1 Polarization: 38.80 SS G_CDS: 0.45 Total: 39.25 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 4.64 Total: -0.50 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -2.87 Total: -74.59 kcal Atomic # 8 Polarization: -58.12 SS G_CDS: -2.07 Total: -60.19 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -57.51 2.18 -55.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193139991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.140 kcal (2) G-P(sol) polarization free energy of solvation -57.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds